Gene
| Gene Model ID | habu1_s1085_g03790 |
|---|---|
| Locus | habu1_scaffold1085 : 220356 ... 285475 : + |
| To GenomeBrowser | habu1_scaffold1085:220356..285475 |
| Genes list of scaffold | habu1_scaffold1085 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pdz and lim domain protein 4 | GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1085_g03790.t2 | 1 | 1 | PDZ | 4 | 50 | 2.5e-11 | 43.5 | 8.7e-15 | 4.3e-11 | 42.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1085_g03790.t2 | gi|729761124|ref|XP_010577491.1| | PREDICTED: PDZ and LIM domain protein 4 [Haliaeetus leucocephalus] | 8.40779e-45 |
| habu1_s1085_g03790.t2 | gi|527258143|ref|XP_005147334.1| | PREDICTED: PDZ and LIM domain protein 4 [Melopsittacus undulatus] | 2.00386e-43 |
| habu1_s1085_g03790.t2 | gi|675612946|ref|XP_008935232.1| | PREDICTED: PDZ and LIM domain protein 4, partial [Merops nubicus] | 3.9937e-43 |
| habu1_s1085_g03790.t2 | gi|701317056|ref|XP_010018719.1| | PREDICTED: PDZ and LIM domain protein 4 [Nestor notabilis] | 1.00053e-42 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 12.4 |
| Venom grand-1 | 15.4 |
| Pit, infrared sensing | 16.9 |
| Nose | 12.8 |
| Brain-1 | 7.4 |
| Eye | 13.2 |
| fetal fibroblast | 54.4 |
| venom gland-2 | 18.7 |
| Brain-2 | 5.1 |
| Spleen | 4.4 |
| Lung | 19.3 |
| Liver | 15.0 |
| Kidney | 68.4 |
| Pancreas | 7.3 |
| Small intestine | 28.6 |
| Large intestine | 30.5 |
| Stomach | 26.5 |
| heart | 42.7 |
| ovary | 3.5 |
| cheek muscle | 70.1 |
Transcript
| Transcript ID | habu1_s1085_g03790.t1 |
|---|---|
| Definition | - |
>habu1_s1085_g03790.t1 agtggattggtaggaaatgatggatgacatggataaatccaggaagtaaagctgctcttgctaacctttgcccaggtgat gtcattttgtcaatcaatggtgacagcacagaaaatatgacacatttagaagcacaaaacaagatcaaagcttgtctgga tcaactgatactgtctgtgaacagggctgaaggcaaggtttggtcacccagtactttggaagatggaaaagcacaagctt atcgtgtcagtgtagaacctgaaccacaggataatggacctactctaaacaggagacccatggccttttcacctggagga agtccaacagacaacaagcagaccttaaatttgcaatataacaatccttcacgtctgcatgcaaacaacagtccagagtc tagtttgccctcacagttgagtggtctccatatcacaactctccaaagtgctgatcctctaaggtctctaccaaggaaca aaaatggaattgacacagactccgatgtgtacaaaatgctacaagatcatgaaaggcctgtttcagaacctaagcaatca ggatctttccggtatctgcagggcatgttggaagccggagagaatggtgaaaagtacgacaaagtgaccagtccaagaca cattaaatctccagtccctaaactgggtggagccatgtctggcttgcaggtgctccctgagtgtaccagatgtggtaacg gcattgttggcacaatagtgaaagcccgtgacaagctctaccatccagaatgtttcatgtgtgacgactgtggcctcaac ctgaagcaaaggggctatttcttcattgaggaacaactatactgtgagacacatgccaaggaaagggttaaaccaccaga aggatacgacgtggtagctgtttatccgaatgccaaagttgaacttgtctaaatagatactcttatttcccagccagggc gaaagggctagaagagagtcaaaagggtttattctcagtaaaatacttttcagaaatcaaatga |
|
| Transcript ID | habu1_s1085_g03790.t2 |
| Definition | - |
>habu1_s1085_g03790.t2 agtggattggtaggaaatgatggatgacatggataaatccaggaagtaaagctgctcttgctaacctttgcccaggtgat gtcattttgtcaatcaatggtgacagcacagaaaatatgacacatttagaagcacaaaacaagatcaaagcttgtctgga tcaactgatactgtctgtgaacagggctgaaggcaaggtttggtcacccagtactttggaagatggaaaagcacaagctt atcgtgtcagtgtagaacctgaaccacagagatccatgagtaagttgtctgatggctctaaacaaagaacaaagtgctga gcaaaggacaaccgaaagagctgttataagtagtacaaaaaatgaatattggctgactatcaggagaagaaaagaattac tactttatcaaagagaagacattgtcatgtactctttccatttgatcttgactatagatacagaaatatgttagcatctt cggatgtatttcagaagaaaaggtttctgtatcattattgagaaaacttcattatgtgcatctggagttgaaagcagaac aactggaactttgacatgggaacagaaagggaattaatccctttttagtgataagagccccatgtattaaatgatatctt ttgttggaccaaa |
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Protein
| Protein ID | habu1_s1085_g03790.t1 |
|---|---|
| Definition | - |
>habu1_s1085_g03790.t1 MTWINPGSKAALANLCPGDVILSINGDSTENMTHLEAQNKIKACLDQLILSVNRAEGKVWSPSTLEDGKAQAYRVSVEPE PQDNGPTLNRRPMAFSPGGSPTDNKQTLNLQYNNPSRLHANNSPESSLPSQLSGLHITTLQSADPLRSLPRNKNGIDTDS DVYKMLQDHERPVSEPKQSGSFRYLQGMLEAGENGEKYDKVTSPRHIKSPVPKLGGAMSGLQVLPECTRCGNGIVGTIVK ARDKLYHPECFMCDDCGLNLKQRGYFFIEEQLYCETHAKERVKPPEGYDVVAVYPNAKVELV |
|
| Protein ID | habu1_s1085_g03790.t2 |
| Definition | - |
>habu1_s1085_g03790.t2 MTWINPGSKAALANLCPGDVILSINGDSTENMTHLEAQNKIKACLDQLILSVNRAEGKVWSPSTLEDGKAQAYRVSVEPE PQRSMSKLSDGSKQRTKC |
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