Gene
| Gene Model ID | habu1_s1085_g03793 |
|---|---|
| Locus | habu1_scaffold1085 : 528936 ... 548727 : - |
| To GenomeBrowser | habu1_scaffold1085:528936..548727 |
| Genes list of scaffold | habu1_scaffold1085 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| interferon regulatory factor 1 isoform x2 | GO:0001819 GO:0002682 GO:0003677 GO:0006355 GO:0010557 GO:0031328 GO:0042110 GO:0048523 GO:0051716 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1085_g03793.t2 | 1 | 1 | IRF | 5 | 113 | 2.24208e-44 | 149.6 | 0.0 | 4.2039e-44 | 148.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1085_g03793.t2 | gi|695156508|ref|XP_009506228.1| | PREDICTED: interferon regulatory factor 1 isoform X2 [Phalacrocorax carbo] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 26.1 |
| Venom grand-1 | 11.9 |
| Pit, infrared sensing | 21.2 |
| Nose | 63.2 |
| Brain-1 | 2.9 |
| Eye | 7.9 |
| fetal fibroblast | 5.2 |
| venom gland-2 | 7.9 |
| Brain-2 | 2.6 |
| Spleen | 35.5 |
| Lung | 33.8 |
| Liver | 15.4 |
| Kidney | 2.2 |
| Pancreas | 3.5 |
| Small intestine | 58.8 |
| Large intestine | 49.8 |
| Stomach | 27.7 |
| heart | 6.2 |
| ovary | 14.0 |
| cheek muscle | 4.0 |
Transcript
| Transcript ID | habu1_s1085_g03793.t1 |
|---|---|
| Definition | - |
>habu1_s1085_g03793.t1 aagtcaaggactaaatcggtcagccaaaatgccacaaacaaggatgcgcatgagaccttggctggaactgcagattaatt caaataaaattcctgggcttcattggctcgataagaaagagaaaaagttccagatcccttggaaacatgctgctaagcat gggtgggaactggaaaaagatgcctgcctgttcaaaaactgggccgttcataccgggagatacaaagatggtgatgtaga ccctgatccaaaaacatggaaagcaaatttccgttgtgccatgaattccttgcctgacattcaagaagtgaaggatcaaa gcattagcagaggacccggtgctgttcgagtctataagatgctgaaacccacagtaaaattagagaaaaaagaaaaaaag tcaaggtctccaaaaagcaagagcccaagaaagtctgcggacgatattaaggaagaagagacggtcgaagcaacaaacag cattcaattgcctgatgaccacagtggctatgcgcttcccagctgtgcagcagaggacatggaagtggggagcacatttg gtcttcagtgtgaattaaacagtgatgcctggaggaattacccactggatattcaggctcctgacagcacagacaacatg tacagacttcaggtttcaccctgctattcttcttctgaagacgaggatattccactgtatgatatgtttagcagctctga gtggcaccaaagcagcgttggtggaagagggttcctgttaaatgaaggaaaagtattcaacttaagtgaagctgcaattc agaatctctcccttgactttactttgcaagagcaagatactggctttgacataccaaagctaggtataaacatttcacct ctagaagtaattccacacgactcaaaatccagcgcagaatacactttgttggatattcgacactttgtgccccctatatc ctgtggcatttaaaccttttcatcactaggcttgtacagctttgttttgaatgctatttgcagacttgacaaattgatca gttattgatactctccaagtttagagtggaaaagtcccagcgatttatgtacagtatatgtgtgtaggaatatctttgtg ataaaactctactttttgtgcctaactaccttataagccaattaagggcttgtttgctgcttctttcactctgttcatct attagtaggattagagtataaataattttaaacatggagaaagt |
|
| Transcript ID | habu1_s1085_g03793.t2 |
| Definition | - |
>habu1_s1085_g03793.t2 aagtcaaggactaaatcggtcagccaaaatgccacaaacaaggatgcgcatgagaccttggctggaactgcagattaatt caaataaaattcctgggcttcattggctcgataagaaagagaaaaagttccagatcccttggaaacatgctgctaagcat gggtgggaactggaaaaagatgcctgcctgttcaaaaactgggccgttcataccgggagatacaaagatggtgatgtaga ccctgatccaaaaacatggaaagcaaatttccgttgtgccatgaattccttgcctgacattcaagaagtgaaggatcaaa gcattagcagaggacccggtgctgttcgagtctataagatgctgaaacccacagtaaaattagagaaaaaagaaaaaaag tcaaggtctccaaaaagcaagagcccaagaaagtctgcggacgatattaaggaagaagagacggtcgaagcaacaaacag cattcaattgcctgatgaccacagtggctatgcgcttcccagctgtgcagcagaggacatggaagtggggagcacatttg gtcttcagtgtgaattaaacagtgatgcctggaggaattacccactggatattcaggctcctgacagcacagacaacatg tacagacttcaggtttcaccctgctattcttcttctgaagacgaggatattccactgtatgatatgtttagcagctctga gtggcaccaaagcagcgttggtggaagagggttcctgttaaatgaaggaaaagtattcaacttaagtgaagctgcaattc agaatctctcccttgactttactttgcaagagcaagatactggctttgacataccaaagctagaagtaattccacacgac tcaaaatccagcgcagaatacactttgttggatattcgacactttgtgccccctatatcctgtggcatttaaaccttttc atcactaggcttgtacagctttgttttgaatgctatttgcagacttgacaaattgatcagttattgatactctccaagtt tagagtggaaaagtcccagcgatttatgtacagtatatgtgtgtaggaatatctttgtgataaaactctactttttgtgc ctaactaccttataagccaattaagggcttgtttgctgcttctttcactctgttcatctattagtaggattagagtataa ataattttaaacatggagaaagt |
|
Protein
| Protein ID | habu1_s1085_g03793.t1 |
|---|---|
| Definition | - |
>habu1_s1085_g03793.t1 MPQTRMRMRPWLELQINSNKIPGLHWLDKKEKKFQIPWKHAAKHGWELEKDACLFKNWAVHTGRYKDGDVDPDPKTWKAN FRCAMNSLPDIQEVKDQSISRGPGAVRVYKMLKPTVKLEKKEKKSRSPKSKSPRKSADDIKEEETVEATNSIQLPDDHSG YALPSCAAEDMEVGSTFGLQCELNSDAWRNYPLDIQAPDSTDNMYRLQVSPCYSSSEDEDIPLYDMFSSSEWHQSSVGGR GFLLNEGKVFNLSEAAIQNLSLDFTLQEQDTGFDIPKLGINISPLEVIPHDSKSSAEYTLLDIRHFVPPISCGI |
|
| Protein ID | habu1_s1085_g03793.t2 |
| Definition | - |
>habu1_s1085_g03793.t2 MPQTRMRMRPWLELQINSNKIPGLHWLDKKEKKFQIPWKHAAKHGWELEKDACLFKNWAVHTGRYKDGDVDPDPKTWKAN FRCAMNSLPDIQEVKDQSISRGPGAVRVYKMLKPTVKLEKKEKKSRSPKSKSPRKSADDIKEEETVEATNSIQLPDDHSG YALPSCAAEDMEVGSTFGLQCELNSDAWRNYPLDIQAPDSTDNMYRLQVSPCYSSSEDEDIPLYDMFSSSEWHQSSVGGR GFLLNEGKVFNLSEAAIQNLSLDFTLQEQDTGFDIPKLEVIPHDSKSSAEYTLLDIRHFVPPISCGI |
|