Gene
| Gene Model ID | habu1_s1167_g04045 |
|---|---|
| Locus | habu1_scaffold1167 : 144106 ... 157136 : + |
| To GenomeBrowser | habu1_scaffold1167:144106..157136 |
| Genes list of scaffold | habu1_scaffold1167 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| polyadenylate-binding protein 1 isoform x1 | GO:0000166 GO:0003723 GO:0005737 GO:0031047 GO:0060213 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1167_g04045.t1 | 4 | 1 | RRM_1 | 4 | 74 | 0.0 | 301.4 | 3.8e-23 | 4.6e-20 | 71.0 |
| habu1_s1167_g04045.t1 | 4 | 1 | RRM_6 | 4 | 74 | 0.0 | 204.7 | 5.2e-15 | 6.4e-12 | 45.2 |
| habu1_s1167_g04045.t1 | 4 | 1 | RRM_5 | 18 | 78 | 1.54143e-44 | 149.5 | 8.9e-10 | 1.1e-06 | 28.3 |
| habu1_s1167_g04045.t1 | 4 | 2 | RRM_1 | 92 | 159 | 0.0 | 301.4 | 4.7e-24 | 5.8e-21 | 73.8 |
| habu1_s1167_g04045.t1 | 4 | 2 | RRM_6 | 92 | 159 | 0.0 | 204.7 | 1.6e-15 | 2.0e-12 | 46.9 |
| habu1_s1167_g04045.t1 | 4 | 2 | RRM_5 | 106 | 161 | 1.54143e-44 | 149.5 | 3.3e-13 | 4.1e-10 | 39.3 |
| habu1_s1167_g04045.t1 | 4 | 3 | RRM_1 | 184 | 252 | 0.0 | 301.4 | 4.4e-28 | 5.4e-25 | 86.8 |
| habu1_s1167_g04045.t1 | 4 | 3 | RRM_6 | 184 | 253 | 0.0 | 204.7 | 1.9e-19 | 2.3e-16 | 59.5 |
| habu1_s1167_g04045.t1 | 4 | 3 | RRM_5 | 198 | 254 | 1.54143e-44 | 149.5 | 8.9e-13 | 1.1e-09 | 37.9 |
| habu1_s1167_g04045.t1 | 4 | 4 | RRM_1 | 287 | 354 | 0.0 | 301.4 | 7.8e-22 | 9.7e-19 | 66.7 |
| habu1_s1167_g04045.t1 | 4 | 4 | RRM_6 | 287 | 354 | 0.0 | 204.7 | 4.4e-16 | 5.5e-13 | 48.7 |
| habu1_s1167_g04045.t1 | 4 | 4 | RRM_5 | 301 | 359 | 1.54143e-44 | 149.5 | 2.2e-13 | 2.8e-10 | 39.8 |
| habu1_s1167_g04045.t1 | 1 | 1 | PABP | 534 | 605 | 4.6e-35 | 119.1 | 1.5e-37 | 1.8e-34 | 117.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1167_g04045.t1 | gi|327283838|ref|XP_003226647.1| | PREDICTED: polyadenylate-binding protein 1 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s1167_g04045.t1 | gi|557293746|ref|XP_006029338.1| | PREDICTED: polyadenylate-binding protein 1 isoform X2 [Alligator sinensis] | 0.0 |
| habu1_s1167_g04045.t1 | gi|591385597|ref|XP_007067244.1| | PREDICTED: polyadenylate-binding protein 1 isoform X1 [Chelonia mydas] | 0.0 |
| habu1_s1167_g04045.t1 | gi|558159325|ref|XP_006122475.1| | PREDICTED: polyadenylate-binding protein 1 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s1167_g04045.t1 | gi|641775106|ref|XP_008171015.1| | PREDICTED: polyadenylate-binding protein 1 isoform X1 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 413.1 |
| Venom grand-1 | 2343.7 |
| Pit, infrared sensing | 775.9 |
| Nose | 458.1 |
| Brain-1 | 118.7 |
| Eye | 636.9 |
| fetal fibroblast | 1292.4 |
| venom gland-2 | 2273.8 |
| Brain-2 | 94.9 |
| Spleen | 1304.7 |
| Lung | 1430.3 |
| Liver | 2532.9 |
| Kidney | 4641.0 |
| Pancreas | 3157.7 |
| Small intestine | 2469.7 |
| Large intestine | 1857.1 |
| Stomach | 2165.2 |
| heart | 606.9 |
| ovary | 224.7 |
| cheek muscle | 905.0 |
Transcript
| Transcript ID | habu1_s1167_g04045.t1 |
|---|---|
| Definition | - |
>habu1_s1167_g04045.t1 gccgcctcttccccctccccgtccccccgccagcatgaaccccagcgctcccagctacccgatggcctcgctctacgtgg gcgacctgcaccccgatgtcaccgaggctatgctctacgagaagttcagccccgccgggcccatcctctccatccgcgtc tgcagggacatgatcacccggcgctcgctaggctacgcctatgtcaacttccagcagcccgccgacgctgaacgagcttt agataccatgaattttgatgtcattaaaggcaagccagttcgtatcatgtggtctcagcgtgatccatctcttcgaaaaa gtggtgttggcaacattttcattaaaaacttggataaatcaattgataataaagctttgtatgatacattttcagctttt ggaaacatcctctcttgtaaggtcgtatgtgatgagaatggatccaaaggctatgggtttgtacattttgaaacacaaga agctgcagaaagagctattgaaaaaatgaatggaatgctgcttaacgatcgtaaagtatttgttggaaggtttaaatcac gcaaagagcgggaagcagagcttggggctcgtgctaaggaattcactaatgtttacatcaagaattttggagaagacatg gatgatgagagactgaaagaactctttggcaagtttggacctgccttgagtgtgaaagttatgactgatgaaagtggaaa atccaaaggctttggctttgtcagttttgaaagacacgaggatgcccaaaaagctgtagatgaaatgaatggaaaggaac tcaatgggaagcaaatatatgttggtcgagctcagaaaaaagttgaaagacaaacagagcttaaacgcaaatttgaacaa atgaagcaggataggattacaagataccagggtgtaaatctatacgtgaaaaatttagatgatggaattgatgatgaacg tctgcgcaaagaattttcaccatttggcacaataactagtgcaaaggtcatgatggaaggaggccgcagtaaaggatttg gatttgtttgcttttcttcaccagaagaagcaaccaaagcagttacagaaatgaatggtagaattgtggccaccaaacca ctatatgtggctttagctcaacgtaaagaggaacgccaggctcacctcaccaaccaatatatgcagagaatggcaagtgt gagagcagtgcccaatcctgtcatcaacccttaccaaccagcacctccttcaggttatttcatggcagctatccctcaga cacaaaaccgtgcagcctactatcctactagccagattactcaacttagaccaagtcctcgctgggctgctcagggtgcc agacctcatcctttccagaatatgccaggtgccatccgccctacagctcccagaccaccatttagtacgatgaggccagc ttcatcacaagttacacgagtcatgtcaacacagcgtgttgcaaacacatcaacacagaccatgggtccacgtccagcgg cagcagctgctgcagccactccagctgtacgcactgtttcacagtataagtatgctgcgggtgttcgcaatcctcagcag catcttaacacccagcctcaggttgctatgcagcagcctgctgtccatgtacaaggtcaggaaccattgactgcttccat gctggcttctgcccctccacaagaacaaaagcagatgttgggagaacgtctgttccctcttatccaagccatgcacccta ctttggcgggtaaaataactggtatgttgctagaaattgacaactctgaacttcttcacatgcttgagtctcctgaatct cttcgttcgaaggttgatgaagctgtagccgtactgcaagcccatcaagctaaagaagctgctcaaaaagcagttaacaa tccagcaggagttccaagtgtctaataagacccaggactacgtattattatatcgcttcaccgaaggaaaaatatctaaa catggaaaaactactaaatattgagaaaaacattgcaaaatataaaataaataaaaaaaggaaaggaaactttgaagctt atgtacacaacaaatgccaggactagcaaaactcctagtcctagattacctattgatttaaaatccaaaaaaaaatagca aaagttaaaaaacaaattaatgttttataaacccggggaaaaaagaattttcagcacactacaaaaaatttaaagcattc ctttctttaattttgtaatttactgtggaaaagctcagaatatcactactgttgtagttagcagtaaggattgatagctg agcaaagaaccataatttggattatacaattcttgctttaataaaaattccttaaacattggcattt |
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Protein
| Protein ID | habu1_s1167_g04045.t1 |
|---|---|
| Definition | - |
>habu1_s1167_g04045.t1 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYF MAAIPQTQNRAAYYPTSQITQLRPSPRWAAQGARPHPFQNMPGAIRPTAPRPPFSTMRPASSQVTRVMSTQRVANTSTQT MGPRPAAAAAAATPAVRTVSQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPL IQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPAGVPSV |
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