Gene
| Gene Model ID | habu1_s1167_g04048 |
|---|---|
| Locus | habu1_scaffold1167 : 265736 ... 301874 : + |
| To GenomeBrowser | habu1_scaffold1167:265736..301874 |
| Genes list of scaffold | habu1_scaffold1167 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase rnf19a | GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1167_g04048.t1 | 2 | 1 | IBR | 168 | 233 | 5.8e-23 | 80.5 | 1.4e-18 | 5.3e-15 | 55.0 |
| habu1_s1167_g04048.t1 | 2 | 2 | IBR | 263 | 309 | 5.8e-23 | 80.5 | 5.8e-13 | 2.2e-09 | 37.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1167_g04048.t1 | gi|529422392|ref|XP_005231047.1| | PREDICTED: E3 ubiquitin-protein ligase RNF19A [Falco peregrinus] | 0.0 |
| habu1_s1167_g04048.t1 | gi|541989055|ref|XP_005445431.1| | PREDICTED: E3 ubiquitin-protein ligase RNF19A [Falco cherrug] | 0.0 |
| habu1_s1167_g04048.t1 | gi|327283848|ref|XP_003226652.1| | PREDICTED: E3 ubiquitin-protein ligase RNF19A isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s1167_g04048.t1 | gi|527265492|ref|XP_005150952.1| | PREDICTED: E3 ubiquitin-protein ligase RNF19A [Melopsittacus undulatus] | 0.0 |
| habu1_s1167_g04048.t1 | gi|602667267|ref|XP_007439198.1| | PREDICTED: E3 ubiquitin-protein ligase RNF19A-like isoform X1 [Python bivittatus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 11.9 |
| Venom grand-1 | 7.3 |
| Pit, infrared sensing | 7.2 |
| Nose | 8.9 |
| Brain-1 | 2.8 |
| Eye | 5.6 |
| fetal fibroblast | 14.1 |
| venom gland-2 | 11.1 |
| Brain-2 | 3.1 |
| Spleen | 9.3 |
| Lung | 13.3 |
| Liver | 10.7 |
| Kidney | 17.7 |
| Pancreas | 11.9 |
| Small intestine | 9.4 |
| Large intestine | 10.1 |
| Stomach | 13.3 |
| heart | 6.2 |
| ovary | 70.3 |
| cheek muscle | 16.4 |
Transcript
| Transcript ID | habu1_s1167_g04048.t1 |
|---|---|
| Definition | - |
>habu1_s1167_g04048.t1 ataagttttccgggaaagaacttctcagcaatcgacgccctcttttcccggccgagtctctgaggcacctctcgcttgta tagaaaggaggagggcggcggaaagcagcgccaccttaaaccgaagcctccgagttaagtgggaaagccgcgcttcctac gaaatagaaagatccaagatttgttaacttaataagacacaaccaactaatttgttagatggctgcactacaaatttgag catgatctttcatattctactgctggctgacacatggaggcttatttcattcattaagaattgctgaggagcattttgag gtggattacatattgtgaagaatttgctgaatgaacaagatctgaccatgcataacaagacttaagccgcctttccttct gtgacttaaatatgctgcttttcaatagtgcttttgtctttacaatggtcatagctgcatgtattctttgatccgtttct gatgaatattatagccatgagtttacatcggcaaatgggatctgatagggacctgcaatctactgcctcctctgtaagct tgccttcaattaaaaaggcaccaaagaaaagaagaatttcactgggatctctttttcgaaggaaaagggatacgaaacat aaagccaaggatgtaaatggcggcgttgatggaattgcaagtattgaaactatacactcagaaatatgcccagacaagaa ctctattttatctgcctatatgtcatcagacaatggaactgcgatctgtagtaagcagacgggagacttcatagaatgtc ccttgtgccttttgcggcactctaaggagaggtttccggaaataatgacttgtcaccatagatcttgtgtggattgctta cgtcagtatctccggatagaaatctcagagagcagagttaatatcagctgtccagaatgctctgagcgatttaatcccca tgacattagattaattttaaatgatgacatcttgatggaaaaatatgaagagtttatgcttagacggtggcttgttgcag accctgattgtaggtggtgtcctgctccagactgcgggtatgcagtcattgcttttggctgtgcaagctgtcctaaactt atgtgtgggcgtgaaggctgtggaactgaattttgctaccactgtaagcagatttggcatcctaaccagacttgtgatgc tgctcgtcaggaaagagcacaaagtctacgtttgcgaaccattcgttcttcatccattagctatagtcaggagtctggag ctgcagctgatgacataaagccatgcccccgctgtgctgcttatataataaagatgaatgatggaagttgcaatcacatg acctgtgctgtctgtggttgtgaattctgttggttatgcatgaaggagatctcagacttgcattacttaagtccatcagg ctgtacattctgggggaaaaaaccatggagtcggaagaagaaaattctttggcaacttgggacacttgtaggtgcacctg tgggaattgccttaatagcaggcattgctattccagcaatgattattggaattcctgtatatgtgggacgtaagattcat aatcgctacgaaggcaaagacatgtcaaagcataagaggaacttagccattgcaggtggtgtaaccttatctgtaattgt ttcaccagttgtagctgcagtcactgtgggtataggagtccctattatgctggcctatgtgtatggagtagttcccattt ccctctgtcgaagtggaggttgtggagtatcagctggcaatgggaagggtgtcagaatagaatttgatgatgaaaatgat ataactgtgagtggaacaaatgcagcagtagacactacatcagtagcagaggcacgtcacaatcctagtataggggaaga aagtgttggattgactggaagcctaagtgcaagtggtagccatatggacagaataggagccattcgagacaatctgagtg aaacagccagcaccatggccttggctggagctagcataacaggaagtctgtcaggaagtgcaatggtcaactgctacaac cggttggaagtccaagcagatgtgcagaaggaaagatgcagtttgagtggcgaatctggcactgttagtttaggaacagt gagtgacaatgccagcaccaaagcaatggctgggtccattataaattcatatgttccattggacagagatggtagcagca tggaggtacaagtagacattgaatcaaagcctgcaaaattcagacacaacagtgggagcagcagcgtggatgatggttgt gctgcaggccgcggtaatgcttgtagctcttccgcctgcttgtctgataacaaatcaagtgttcccaagtggtccaaaga atcatcagcagggaaaaaatgcaaaggatccaagctaggaaagaagctgctgccataattggaaaaagtttctgtatgtt cttcgttcttactctgcctctgacgaaatggaaggacgcgtgactgtgtgctagaatgcattgagtctgaatttgtagct cttgatttggatttgttttaagcaattatttccatcccatgcttttcaaagctatacattaaaactgctgttctgaaaat atctt |
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Protein
| Protein ID | habu1_s1167_g04048.t1 |
|---|---|
| Definition | - |
>habu1_s1167_g04048.t1 MSLHRQMGSDRDLQSTASSVSLPSIKKAPKKRRISLGSLFRRKRDTKHKAKDVNGGVDGIASIETIHSEICPDKNSILSA YMSSDNGTAICSKQTGDFIECPLCLLRHSKERFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECSERFNPHDIRLI LNDDILMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLMCGREGCGTEFCYHCKQIWHPNQTCDAARQER AQSLRLRTIRSSSISYSQESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWG KKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDMSKHKRNLAIAGGVTLSVIVSPVVA AVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDITVSGTNAAVDTTSVAEARHNPSIGEESVGLT GSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCYNRLEVQADVQKERCSLSGESGTVSLGTVSDNAS TKAMAGSIINSYVPLDRDGSSMEVQVDIESKPAKFRHNSGSSSVDDGCAAGRGNACSSSACLSDNKSSVPKWSKESSAGK KCKGSKLGKKLLP |
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