Gene
| Gene Model ID | habu1_s1169_g04076 |
|---|---|
| Locus | habu1_scaffold1169 : 822057 ... 841619 : - |
| To GenomeBrowser | habu1_scaffold1169:822057..841619 |
| Genes list of scaffold | habu1_scaffold1169 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription elongation factor a protein 1 isoform x2 | GO:0003677 GO:0005654 GO:0005730 GO:0008270 GO:0030218 GO:0032784 GO:0045944 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1169_g04076.t2 | 1 | 1 | Med26 | 37 | 89 | 8.1e-19 | 66.8 | 3.2e-22 | 9.6e-19 | 66.6 |
| habu1_s1169_g04076.t2 | 1 | 1 | TFIIS_M | 148 | 262 | 3.89561e-43 | 146.1 | 0.0 | 3.89561e-43 | 146.1 |
| habu1_s1169_g04076.t2 | 1 | 1 | TFIIS_C | 273 | 311 | 2.5e-19 | 68.5 | 1.9e-22 | 5.5e-19 | 67.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1169_g04076.t2 | gi|602643636|ref|XP_007428276.1| | PREDICTED: transcription elongation factor A protein 1 isoform X2 [Python bivittatus] | 0.0 |
| habu1_s1169_g04076.t2 | gi|617560747|ref|XP_007516043.1| | PREDICTED: transcription elongation factor A protein 1 [Erinaceus europaeus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 10.3 |
| Venom grand-1 | 8.6 |
| Pit, infrared sensing | 11.8 |
| Nose | 11.8 |
| Brain-1 | 8.5 |
| Eye | 11.0 |
| fetal fibroblast | 27.6 |
| venom gland-2 | 16.1 |
| Brain-2 | 8.8 |
| Spleen | 12.0 |
| Lung | 12.3 |
| Liver | 10.7 |
| Kidney | 11.9 |
| Pancreas | 11.1 |
| Small intestine | 9.1 |
| Large intestine | 8.5 |
| Stomach | 10.5 |
| heart | 11.2 |
| ovary | 38.0 |
| cheek muscle | 6.4 |
Transcript
| Transcript ID | habu1_s1169_g04076.t1 |
|---|---|
| Definition | - |
>habu1_s1169_g04076.t1 ccgacaagtgatttggcggctccatctttgcttttgcgctgaaagctttggcattcgtggcgtagaagcagcatcgaagg ttgaagctcacttctgctcagttcgccccttagagagagagagaggcgccgccgcggacccggcagccgccatgaacacc gaagacgaaatcatccgcatcgctaagaagatggacaagatggtacagaagaagaacgcggttcaagttgacagagttgt atttcagggtggggctcttgatttactcaaggaacttaagaatatgcctatgactctggaactgttacagtctacaagaa ttggaatgtctgtgaatgcaattcggaaacaaagtacagatgaagaaattacatctctagcaaaatccctcattaaatca tggaaaaaattattagatggaccatcaaatgacaaagaatctgaagaaaagaaaaaagaatcagcatcatcttcacaaaa tagtcctgaagcaagggaagaaagcacatctgattctgtacggatgaaatgcagagaaatgttggcagcagctctcaaaa caggggatgattatattgctattggtgctgatgaggaagaactaggttctcagattgaagaagctatatttcaggagcta aaaaatactgacatgaaatataaaaatagagtgcgcagcaggatagcaaatcttaaagatacaaaaaatcctaatttaag gaaaaatgttttatgtggaaatatacttccagatagatttgctaaaatgacagcagaggagatggcaagtgatgaactga aagaaatgaggaagaaccttaccaaagaagctataagagagcaccagatggctaaaacaggaggaacaccgactgatcta tttacctgtggtaaatgtaaaaagaagaactgtacttacacccaggttcagaccagaagtgctgatgaacctatgacaac ctttgttgtgtgcaatgaatgtggaaacagatggaagttctgctagaagaagaatttgttggaccagttaaaaataattt tataattagttttaagaactaggtaaagcatcgaattccttgcagagatgtttttgtttgtttgcttccttttaagcaga taactctgaaactagattttgtttttgacatgaccatccctgtagttaatagtcagagccaggatgctcagttgtatggt gtaatattttttccatttttataagcaactctacattaaacttttatcaatgaaatttgggt |
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| Transcript ID | habu1_s1169_g04076.t2 |
| Definition | - |
>habu1_s1169_g04076.t2 ccgacaagtgatttggcggctccatctttgcttttgcgctgaaagctttggcattcgtggcgtagaagcagcatcgaagg ttgaagctcacttctgctcagttcgccccttagagagagagagaggcgccgccgcggacccggcagccgccatgaacacc gaagacgaaatcatccgcatcgctaagaagatggacaagatggtacagaagaagaacgcggttcaagttgacagagttgt atttcagggtggggctcttgatttactcaaggaacttaagaatatgcctatgactctggaactgttacagtctacaagaa ttggaatgtctgtgaatgcaattcggaaacaaagtacagatgaagaaattacatctctagcaaaatccctcattaaatca tggaaaaaattattagatggaccatcaaatgacaaagaatctgaagaaaagaaaaaagaatcagcatcatcttcacaaaa tagtcctgaagcaagggaagaaagcagttccagtagcaattcaaacagcaagaaagaggattctaacatttcatcagaca catatatctcttcttttccccgggctccaagcacatctgattctgtacggatgaaatgcagagaaatgttggcagcagct ctcaaaacaggggatgattatattgctattggtgctgatgaggaagaactaggttctcagattgaagaagctatatttca ggagctaaaaaatactgacatgaaatataaaaatagagtgcgcagcaggatagcaaatcttaaagatacaaaaaatccta atttaaggaaaaatgttttatgtggaaatatacttccagatagatttgctaaaatgacagcagaggagatggcaagtgat gaactgaaagaaatgaggaagaaccttaccaaagaagctataagagagcaccagatggctaaaacaggaggaacaccgac tgatctatttacctgtggtaaatgtaaaaagaagaactgtacttacacccaggttcagaccagaagtgctgatgaaccta tgacaacctttgttgtgtgcaatgaatgtggaaacagatggaagttctgctagaagaagaatttgttggaccagttaaaa ataattttataattagttttaagaactaggtaaagcatcgaattccttgcagagatgtttttgtttgtttgcttcctttt aagcagataactctgaaactagattttgtttttgacatgaccatccctgtagttaatagtcagagccaggatgctcagtt gtatggtgtaatattttttccatttttataagcaactctacattaaacttttatcaatgaaatttgggt |
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Protein
| Protein ID | habu1_s1169_g04076.t1 |
|---|---|
| Definition | - |
>habu1_s1169_g04076.t1 MNTEDEIIRIAKKMDKMVQKKNAVQVDRVVFQGGALDLLKELKNMPMTLELLQSTRIGMSVNAIRKQSTDEEITSLAKSL IKSWKKLLDGPSNDKESEEKKKESASSSQNSPEAREESTSDSVRMKCREMLAAALKTGDDYIAIGADEEELGSQIEEAIF QELKNTDMKYKNRVRSRIANLKDTKNPNLRKNVLCGNILPDRFAKMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTP TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC |
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| Protein ID | habu1_s1169_g04076.t2 |
| Definition | - |
>habu1_s1169_g04076.t2 MNTEDEIIRIAKKMDKMVQKKNAVQVDRVVFQGGALDLLKELKNMPMTLELLQSTRIGMSVNAIRKQSTDEEITSLAKSL IKSWKKLLDGPSNDKESEEKKKESASSSQNSPEAREESSSSSNSNSKKEDSNISSDTYISSFPRAPSTSDSVRMKCREML AAALKTGDDYIAIGADEEELGSQIEEAIFQELKNTDMKYKNRVRSRIANLKDTKNPNLRKNVLCGNILPDRFAKMTAEEM ASDELKEMRKNLTKEAIREHQMAKTGGTPTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC |
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