Gene
| Gene Model ID | habu1_s1169_g04078 |
|---|---|
| Locus | habu1_scaffold1169 : 864760 ... 869280 : + |
| To GenomeBrowser | habu1_scaffold1169:864760..869280 |
| Genes list of scaffold | habu1_scaffold1169 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 39s ribosomal protein mitochondrial | GO:0003735 GO:0005739 GO:0006412 GO:0015934 GO:0042254 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1169_g04078.t1 | 1 | 1 | Ribosomal_L18e | 52 | 177 | 5.9e-09 | 36.3 | 3.6e-12 | 5.3e-08 | 33.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1169_g04078.t1 | gi|602643628|ref|XP_007428272.1| | PREDICTED: 39S ribosomal protein L15, mitochondrial [Python bivittatus] | 0.0 |
| habu1_s1169_g04078.t1 | gi|564231210|ref|XP_006260003.1| | PREDICTED: 39S ribosomal protein L15, mitochondrial [Alligator mississippiensis] | 0.0 |
| habu1_s1169_g04078.t1 | gi|729768072|ref|XP_010581243.1| | PREDICTED: 39S ribosomal protein L15, mitochondrial [Haliaeetus leucocephalus] | 0.0 |
| habu1_s1169_g04078.t1 | gi|187607778|ref|NP_001120107.1| | 39S ribosomal protein L15, mitochondrial [Xenopus (Silurana) tropicalis] | 0.0 |
| habu1_s1169_g04078.t1 | gi|327279214|ref|XP_003224352.1| | PREDICTED: 39S ribosomal protein L15, mitochondrial [Anolis carolinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 15.7 |
| Venom grand-1 | 35.2 |
| Pit, infrared sensing | 21.9 |
| Nose | 16.0 |
| Brain-1 | 7.6 |
| Eye | 20.5 |
| fetal fibroblast | 34.2 |
| venom gland-2 | 28.4 |
| Brain-2 | 8.0 |
| Spleen | 25.0 |
| Lung | 17.9 |
| Liver | 43.1 |
| Kidney | 22.5 |
| Pancreas | 71.3 |
| Small intestine | 26.9 |
| Large intestine | 20.0 |
| Stomach | 50.2 |
| heart | 48.1 |
| ovary | 144.1 |
| cheek muscle | 50.1 |
Transcript
| Transcript ID | habu1_s1169_g04078.t1 |
|---|---|
| Definition | - |
>habu1_s1169_g04078.t1 acgcggcgcggcggttctccttgctgccgcccttgattcattgcgcgaaggcgatggcggcttcgcgggcacctggcggg gggaacaggacgaaagccttggagttgttgcgcagcctgcctagggtcagcctcgccaacttacggcctaaccctgatgc ccggcgaaagaacaaaaaaccaggtcgtggaagatataatccttcaaagagaactggcgggcaagcaaaatctgggtcac tccctcgattaggctttgaaggtggccaaacaccattttatctggttattccaaaatatggctacaatgaaggacaccat ctcagacgtcaatatccacccattagtctcaaaaagctgcaataccttattgacttaggcagaattgatcccatgcaacc aatagatcttacccagctgacaaatgccagaggtgtaacattacagccattcaaaagacattatggtatccatcttgtgg aggagggtgctgatacttttgcagcaaaaataaacattgaagtacagtgggtatctgaactagccatagctgctgttgaa aaaaatggtggtgtaattactacagctttttatgatccaaggagtttggaggttctttgcaaaccagtgccattttttca gagaggcaaacctattccaaggcgaatgcttcctcctgaagatcttgtccgttactatacagatcctgcaaaccgaggct acttggccgatccttcaaaaattgctgaagcaaggatggaactttctaaaaaatatggttatatcttaccagatattacc aaagatgaactcttcgaaatgttgagttctcagaaggaccctaggcagattttctttggacttgctcctggttggatagt aaatatgtcagaaaagaagattttgaaaccaacagatgagaggttgctaaaatattacagctcctgaatattgaaattgg atataccagttagtgtttatatgtaatatatagtattgttttctctaaaaatgaatcagttgtaataatactaaaataaa atatgaacatttttctgcatta |
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Protein
| Protein ID | habu1_s1169_g04078.t1 |
|---|---|
| Definition | - |
>habu1_s1169_g04078.t1 MAASRAPGGGNRTKALELLRSLPRVSLANLRPNPDARRKNKKPGRGRYNPSKRTGGQAKSGSLPRLGFEGGQTPFYLVIP KYGYNEGHHLRRQYPPISLKKLQYLIDLGRIDPMQPIDLTQLTNARGVTLQPFKRHYGIHLVEEGADTFAAKINIEVQWV SELAIAAVEKNGGVITTAFYDPRSLEVLCKPVPFFQRGKPIPRRMLPPEDLVRYYTDPANRGYLADPSKIAEARMELSKK YGYILPDITKDELFEMLSSQKDPRQIFFGLAPGWIVNMSEKKILKPTDERLLKYYSS |
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