Gene
| Gene Model ID | habu1_s1233_g04255 |
|---|---|
| Locus | habu1_scaffold1233 : 491238 ... 507848 : + |
| To GenomeBrowser | habu1_scaffold1233:491238..507848 |
| Genes list of scaffold | habu1_scaffold1233 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription factor vbp-like isoform x1 | GO:0006355 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1233_g04255.t2 | 1 | 1 | bZIP_2 | 216 | 269 | 7.8e-16 | 57.6 | 2.1e-19 | 7.8e-16 | 57.6 |
| habu1_s1233_g04255.t2 | 1 | 1 | bZIP_1 | 217 | 276 | 5.5e-06 | 26.2 | 2.9e-09 | 1.1e-05 | 25.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1233_g04255.t2 | gi|326912001|ref|XP_003202343.1| | PREDICTED: thyrotroph embryonic factor isoform X1 [Meleagris gallopavo] | 0.0 |
| habu1_s1233_g04255.t2 | gi|45382401|ref|NP_990713.1| | transcription factor VBP [Gallus gallus] | 0.0 |
| habu1_s1233_g04255.t2 | gi|514784326|ref|XP_005028523.1| | PREDICTED: transcription factor VBP-like isoform X1 [Anas platyrhynchos] | 0.0 |
| habu1_s1233_g04255.t2 | gi|733869773|ref|XP_010708766.1| | PREDICTED: thyrotroph embryonic factor isoform X2 [Meleagris gallopavo] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.2 |
| Venom grand-1 | 0.6 |
| Pit, infrared sensing | 2.2 |
| Nose | 1.6 |
| Brain-1 | 11.0 |
| Eye | 3.0 |
| fetal fibroblast | 7.3 |
| venom gland-2 | 2.3 |
| Brain-2 | 12.4 |
| Spleen | 2.3 |
| Lung | 1.2 |
| Liver | 0.4 |
| Kidney | 2.8 |
| Pancreas | 2.1 |
| Small intestine | 3.2 |
| Large intestine | 0.5 |
| Stomach | 2.5 |
| heart | 2.8 |
| ovary | 24.1 |
| cheek muscle | 9.0 |
Transcript
| Transcript ID | habu1_s1233_g04255.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04255.t1 ctctgggcctccagtggggctcgagctccgccggccggccccggcacatcaatagcatgtccagccgtgccgcgcctcag gaggtagcagcggcagcggggaccgcgggagccgtgcagcaagaacggggcctgaggggcgcctttcccttggtgctgaa gaaactgatggaaaaccctccgcgggacgcacgcctggataaagagaagaaggaaaaacttgaggaagatgaagcagcag ctgcaagtacaatggcagtttctgcctccctcatgcctcctatttgggataaaactattccttatgatggggagtctttt catctggagtatatggatcttgatgaattcctgttggaaaatggaatcccttccagtcctgctcatctggatctgaatca gaatcccctcctgcctgtggctgaactggaaggaaaagaacctgccactgtttctgttgctactactccacctgcatcat cttccacagtggttttcaatctatcagaaactaccaaaaatacagagtcctctccagataatgaaagattgactcccagc cctgttgatccagattgtgttgagattgatgtgaatttcaaccctgaccctgctgatttagtgctgtccactgtgcctgg aggagagctctttaatcctagaaagcataagtttgctgaagaggacttgaaaccacagcctatgattaaaaaagccaaga aagtctttgtcccagaaaatcaaaaggatgaaaaatattggacaaggcggaagaaaaataatgtggcagccaagcgatct cgggatgctcggcgcctaaaagagaatcagatcacaatccgagctgcttttctggagaaggagaacacagccttgaggac cgaagttgcagaactacggaaggaaatgggaaaatgcaagaacattgtctctaaatatgagaccagatatggatcctttg acttatccgattccgaatgatgcatctttaaagactcttaaaatcacaaagaaactaaaaagtacacatgaaaccacctg ccatcaaagtgaacagtgagacatatgaggtattctacacaaacatctgatgactctgcttctctgcaagtatctccttg aactacctaagggctgagcctgatgaaaagactaaggtctctagttttacacttcgctttgtactgctcttttccttgct gtggcaatttgcagtacattgtttatttcttttcaaccaatgtggtatttgtgattcagaatatagcctgaacaagctgt cgttttgcaaggtaattcttaggaggaaagaaccagttttaattgaaaatcacttcagctaaataaaaaagttaaaaatt ctgttttat |
|
| Transcript ID | habu1_s1233_g04255.t2 |
| Definition | - |
>habu1_s1233_g04255.t2 ccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctctgattggct ttccctttctcaaactcctccctcattttcagattacagatgttagcaatatagttaaagatagcccaagtcttcaagtt acttttgttatataaaaaaagttatttgcattcaggggctcagttaccaaaccagaggccctttcctgggaaagataggg aactcttccccctcccgccggccccgcgattggccatgactagctaccacaatagcggggccgtttccgtggactttcct gaggtcctgaaatcgcttctggaataccgtttaccctggacgggcactctgaaagataaagagaagaaggaaaaacttga ggaagatgaagcagcagctgcaagtacaatggcagtttctgcctccctcatgcctcctatttgggataaaactattcctt atgatggggagtcttttcatctggagtatatggatcttgatgaattcctgttggaaaatggaatcccttccagtcctgct catctggatctgaatcagaatcccctcctgcctgtggctgaactggaaggaaaagaacctgccactgtttctgttgctac tactccacctgcatcatcttccacagtggttttcaatctatcagaaactaccaaaaatacagagtcctctccagataatg aaagattgactcccagccctgttgatccagattgtgttgagattgatgtgaatttcaaccctgaccctgctgatttagtg ctgtccactgtgcctggaggagagctctttaatcctagaaagcataagtttgctgaagaggacttgaaaccacagcctat gattaaaaaagccaagaaagtctttgtcccagaaaatcaaaaggatgaaaaatattggacaaggcggaagaaaaataatg tggcagccaagcgatctcgggatgctcggcgcctaaaagagaatcagatcacaatccgagctgcttttctggagaaggag aacacagccttgaggaccgaagttgcagaactacggaaggaaatgggaaaatgcaagaacattgtctctaaatatgagac cagatatggatcctttgacttatccgattccgaatgatgcatctttaaagactcttaaaatcacaaagaaactaaaaagt acacatgaaaccacctgccatcaaagtgaacagtgagacatatgaggtattctacacaaacatctgatgactctgcttct ctgcaagtatctccttgaactacctaagggctgagcctgatgaaaagactaaggtctctagttttacacttcgctttgta ctgctcttttccttgctgtggcaatttgcagtacattgtttatttcttttcaaccaatgtggtatttgtgattcagaata tagcctgaacaagctgtcgttttgcaaggtaattcttaggaggaaagaaccagttttaattgaaaatcacttcagctaaa taaaaaagttaaaaattctgttttat |
|
Protein
| Protein ID | habu1_s1233_g04255.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04255.t1 MSSRAAPQEVAAAAGTAGAVQQERGLRGAFPLVLKKLMENPPRDARLDKEKKEKLEEDEAAAASTMAVSASLMPPIWDKT IPYDGESFHLEYMDLDEFLLENGIPSSPAHLDLNQNPLLPVAELEGKEPATVSVATTPPASSSTVVFNLSETTKNTESSP DNERLTPSPVDPDCVEIDVNFNPDPADLVLSTVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPENQKDEKYWTRRKK NNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEMGKCKNIVSKYETRYGSFDLSDSE |
|
| Protein ID | habu1_s1233_g04255.t2 |
| Definition | - |
>habu1_s1233_g04255.t2 MTSYHNSGAVSVDFPEVLKSLLEYRLPWTGTLKDKEKKEKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMD LDEFLLENGIPSSPAHLDLNQNPLLPVAELEGKEPATVSVATTPPASSSTVVFNLSETTKNTESSPDNERLTPSPVDPDC VEIDVNFNPDPADLVLSTVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPENQKDEKYWTRRKKNNVAAKRSRDARRL KENQITIRAAFLEKENTALRTEVAELRKEMGKCKNIVSKYETRYGSFDLSDSE |
|