Gene
| Gene Model ID | habu1_s1233_g04257 |
|---|---|
| Locus | habu1_scaffold1233 : 557862 ... 568737 : - |
| To GenomeBrowser | habu1_scaffold1233:557862..568737 |
| Genes list of scaffold | habu1_scaffold1233 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| phd finger-like domain-containing protein 5a | GO:0000398 GO:0003700 GO:0005515 GO:0005667 GO:0005686 GO:0005689 GO:0005730 GO:0016363 GO:0016607 GO:0044822 GO:0045449 GO:0045893 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1233_g04257.t1 | 2 | 1 | PHF5 | 1 | 25 | 1.90016e-42 | 143.6 | 9.2e-10 | 4.6e-06 | 26.6 |
| habu1_s1233_g04257.t1 | 2 | 2 | PHF5 | 39 | 134 | 1.90016e-42 | 143.6 | 2.6e-38 | 1.3e-34 | 118.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1233_g04257.t1 | gi|499012071|ref|XP_004557634.1| | 0.0 | |
| habu1_s1233_g04257.t1 | gi|584025521|ref|XP_006807353.1| | PREDICTED: PHD finger-like domain-containing protein 5A-like [Neolamprologus brichardi] | 0.0 |
| habu1_s1233_g04257.t1 | gi|548338412|ref|XP_005721862.1| | PREDICTED: PHD finger-like domain-containing protein 5A-like [Pundamilia nyererei] | 0.0 |
| habu1_s1233_g04257.t1 | gi|557290274|ref|XP_006027745.1| | PREDICTED: PHD finger-like domain-containing protein 5A [Alligator sinensis] | 0.0 |
| habu1_s1233_g04257.t1 | gi|14249398|ref|NP_116147.1| | PHD finger-like domain-containing protein 5A [Homo sapiens] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.5 |
| Venom grand-1 | 10.2 |
| Pit, infrared sensing | 6.6 |
| Nose | 7.1 |
| Brain-1 | 3.9 |
| Eye | 5.1 |
| fetal fibroblast | 18.1 |
| venom gland-2 | 9.4 |
| Brain-2 | 2.7 |
| Spleen | 4.0 |
| Lung | 4.0 |
| Liver | 6.1 |
| Kidney | 4.1 |
| Pancreas | 8.7 |
| Small intestine | 3.1 |
| Large intestine | 3.8 |
| Stomach | 6.9 |
| heart | 9.9 |
| ovary | 25.6 |
| cheek muscle | 5.9 |
Transcript
| Transcript ID | habu1_s1233_g04257.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04257.t1 cgtttttacgattaaataaaaagtaattcacttacttctgttaaggacctaaagagtagaggtcacgggtaaaacgtcgt taacaacggcgcgagacgagaacctaaggggatggctaaacatcatccagatttaatcttctgccgcaaacaggctggag tagctattgggagactatgtgaaaaattattctcagaaatcttcttcaacaccaaagttcaaaagtgtcagtgcccctcc tatcccacttcttcaacattcaactttcacttccatagtgatggcaaatgtgttatctgcgactcttatgtacggccttg tacactggtacgcatttgtgatgagtgcaactatggctcttaccaaggacgttgtgtgatatgtgggggtcctggagtct ctgatgcttattactgcaaggaatgtactattcaagaaaaagatcgagatggctgtcccaagattgtcaatttaggtagt tcaaaaacagatctcttttatgagcgaaagaaatatggcttcaagaaaagatgatcccatctccaccatggaagtacttc taaaaaattttggacttcatttttataggaaagcaattaaatgtattttgtttcaattctaat |
|
Protein
| Protein ID | habu1_s1233_g04257.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04257.t1 MAKHHPDLIFCRKQAGVAIGRLCEKLFSEIFFNTKVQKCQCPSYPTSSTFNFHFHSDGKCVICDSYVRPCTLVRICDECN YGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR |
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