Gene
| Gene Model ID | habu1_s1233_g04259 |
|---|---|
| Locus | habu1_scaffold1233 : 612348 ... 629731 : + |
| To GenomeBrowser | habu1_scaffold1233:612348..629731 |
| Genes list of scaffold | habu1_scaffold1233 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cold shock domain-containing protein c2 | GO:0003677 GO:0006355 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1233_g04259.t2 | 1 | 1 | CSD | 70 | 133 | 9.9e-13 | 47.6 | 1.8e-16 | 1.3e-12 | 47.2 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 10.9 |
| Venom grand-1 | 6.4 |
| Pit, infrared sensing | 9.0 |
| Nose | 7.5 |
| Brain-1 | 14.3 |
| Eye | 12.7 |
| fetal fibroblast | 8.6 |
| venom gland-2 | 4.3 |
| Brain-2 | 25.3 |
| Spleen | 10.8 |
| Lung | 22.6 |
| Liver | 10.6 |
| Kidney | 8.7 |
| Pancreas | 3.9 |
| Small intestine | 12.5 |
| Large intestine | 19.2 |
| Stomach | 9.9 |
| heart | 16.0 |
| ovary | 170.6 |
| cheek muscle | 8.5 |
Transcript
| Transcript ID | habu1_s1233_g04259.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04259.t1 gtgtgagaagaaccgctgctcgggctgaaggagacagaccctcccaccatgtcatctgaccagacctctcaatctacagt accacctctccactctccaaagtcacctgtgtggcctattttcccattcaacagagagggaagccggatttgtgagaggg gaagtcatctttttcgggacttacccagccctcttcccacaaaaagaacgaggacttactctgcgacggctcgtgcctct gctggtcccatctacaaaggtgtatgtaagcagttttcacgctcccagggccatggtttcatcatcccagagagtggcac agaagacatatttgtgcatgtttctgaaaaggagcagaggtttcttgtgatacctcaggaagatggggaccccccgccca tcaattggccagttcatgacagtgaaccacattatgttccagaagactgtggttcttcaaatttgccttagtagagatga ggaagaagcccttgtgccatctcctaaaatgccctgacatcatctcttccagcctcactgattacttggaatcagaaggc tgcaactttgtgcttgaaaaatgaatgggaatatctcctgcattctagttttctagacgccatagtggaaaccattttag cttatagacctatcatttatttggtatgcccttaaacaataatacaaatgagtcttgtttgcatctgg |
|
| Transcript ID | habu1_s1233_g04259.t2 |
| Definition | - |
>habu1_s1233_g04259.t2 gtgtgagaagaaccgctgctcgggctgaaggagacagaccctcccaccatgtcatctgaccagacctctcaatctacagt accacctctccactctccaaagtcacctgtgtggcctattttcccattcaacagagagggaagccggatttgtgagaggg gaagtcatctttttcgggacttacccagccctcttcccacaaaaagaacgaggacttactctgcgacggctcgtgcctct gctggtcccatctacaaaggtgtatgtaagcagttttcacgctcccagggccatggtttcatcatcccagagagtggcac agaagacatatttgtgcatgtttctgacattgagggggaatatgtcccggtagaaggggatgaggtcacatataaaatct gtcccatcccaccaaagaatcagaagttccaggctgtggaggtggtgctcactcatttagcaccacatacaaaacatgaa acatggtcaggccaaataattggctcataaactacttcttgagcctgcaggaagtggagttgaatgatatggtgggtggt ggaactactggagcaatgaaagaaccaggctgggaatttttgtttgctgtgtgacatgtttgcaattttatcttgtcttt tctaagatctaatcttagtttgtaaatgtgcttttttgttatagaagggcaagcaagaagtggaaaagtgttgctggata gatttacacttaagtcatgaattcctgactgtacccaataggacgaaagtaatctactgtcaaagtagaatatattggcc accctgatgtttacctggttctattctaaataaattagaaatgaaattggctatta |
|
Protein
| Protein ID | habu1_s1233_g04259.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04259.t1 MSSDQTSQSTVPPLHSPKSPVWPIFPFNREGSRICERGSHLFRDLPSPLPTKRTRTYSATARASAGPIYKGVCKQFSRSQ GHGFIIPESGTEDIFVHVSEKEQRFLVIPQEDGDPPPINWPVHDSEPHYVPEDCGSSNLP |
|
| Protein ID | habu1_s1233_g04259.t2 |
| Definition | - |
>habu1_s1233_g04259.t2 MSSDQTSQSTVPPLHSPKSPVWPIFPFNREGSRICERGSHLFRDLPSPLPTKRTRTYSATARASAGPIYKGVCKQFSRSQ GHGFIIPESGTEDIFVHVSDIEGEYVPVEGDEVTYKICPIPPKNQKFQAVEVVLTHLAPHTKHETWSGQIIGS |
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