Gene
Gene Model ID | habu1_s1233_g04268 |
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Locus | habu1_scaffold1233 : 802150 ... 874787 : - |
To GenomeBrowser | habu1_scaffold1233:802150..874787 |
Genes list of scaffold | habu1_scaffold1233 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
habu1_s1233_g04268.t2 | 1 | 1 | Shisa | 73 | 215 | 7.5e-37 | 127.2 | 3.4e-40 | 2.5e-36 | 125.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
habu1_s1233_g04268.t2 | gi|641792039|ref|XP_008177470.1| | PREDICTED: putative protein shisa-8 isoform X1 [Chrysemys picta bellii] | 0.0 |
habu1_s1233_g04268.t2 | gi|591352918|ref|XP_007053407.1| | PREDICTED: protein shisa-9-like [Chelonia mydas] | 0.0 |
Expression profile
Libraries | FPKM |
---|---|
>Adult | |
Venom fang forming tissue | 0.1 |
Venom grand-1 | 0.0 |
Pit, infrared sensing | 0.0 |
Nose | 0.1 |
Brain-1 | 2.9 |
Eye | 1.2 |
fetal fibroblast | 0.0 |
venom gland-2 | 0.0 |
Brain-2 | 2.1 |
Spleen | 0.2 |
Lung | 0.3 |
Liver | 0.0 |
Kidney | 0.1 |
Pancreas | 0.0 |
Small intestine | 0.0 |
Large intestine | 0.0 |
Stomach | 0.0 |
heart | 0.0 |
ovary | 0.1 |
cheek muscle | 0.0 |
Transcript
Transcript ID | habu1_s1233_g04268.t1 |
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Definition | - |
>habu1_s1233_g04268.t1 gtcgccaagcaaggctgtccgccattttttttccctttttccggcgggtgagctgggccagctggtggtcggcctgttcc gtctctgccgcttgccagctacgcctcgacggcgcagggggcagaaccacgcatgcgcggcgctcccgggcaaggaaagt cctcgacttacgaccggttgggtagtcctcgacttacgaccggtttagtcctcgacttacgaccggttggggatcgcggc attaaaaagacaagttccagttctgaaggcagaatctctgttgtaagaacactcacagatcttctaaagcagcctgctca cagctcatctgatcacttgcctgatggccatatcagcagtgtgcaggtccagattggtgatagcctttctcggggatctc ccacaagtaacaaagatcagaaacacctgaacaatgctgtaatcaactcctccacaatctcacagattgggctatcacac tcgcataacaatcagctgcaaatgacaagtgttttacctaaccaggcttcagattatgccaaatatgcaactctcaaggc tgtagaaagtgcccccgaagaattctacaagaggtttcccatggtggagatgccatcatcaggcaccttgtcattttctc ccctgacacttcatcaaaatgacctcccaccttttccagaaagcactgctctcattggcttggggacaccaggacagaaa actaaagtgatgaaaaccaatgcaggcagtcctgtcttcaaagggggctgggatcacagccatcctgaatttcgacgaca agcttatgccaccaggcgtcagttcagtattgagaagctgcctgaggtcttcagccaaacccccactcattatgcccagc aacaacggcttttttccactaatagcaagactgaggtcactgtctaggatggatctatggttcattcctatattcttccc tttgaagcagttggtgaagtagggcctgacagcttagaatgaagttgcttccctcaatgtgtcactcctagattctggaa ggagacatagaagatataaagaaaagtagaatgcttgccaga |
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Transcript ID | habu1_s1233_g04268.t2 |
Definition | - |
>habu1_s1233_g04268.t2 gtcgccaagcaaggctgtccgccattttttttccctttttccggcgggtgagctgggccagctggtggtcggcctgttcc gtctctgccgcttgccagctacgcctcgacggcgcagggggcagaaccacgcatgcgcggcgctcccgggcaaggaaagt cctcgacttacgaccggttgggtagtcctcgacttacgaccggtttagtcctcgacttacgaccggttggggatcgcggc attaaaaagaaacgtgagtcagaactgcaggtggaggtcaaagacaataccacattgggtccgatcttagaggacacaat tgtagcccccacagagtccatctttgggggagatcggtgccttggttattatgatgtaatgggccagtgggatcctccat ttaactgcaattcagggatctacaatttttgctgtgggacttgtggttaccgcttctgctgtcaattcacaagtggaaaa cttgatcaaagtggttgttcgaattatgagacaccggaatgggtcaacacaggccaaccaccacctcgagtggatgagac tcctcagaatcctaccaaggacaagaccaacatgattgtatacattatctgtggtgtggtggccatcatggtgctggtgg gtatcttcaccaaactgggactggagaaatcccagagccctcaagcagagattaccatgtccagaacactcacagatctt ctaaagcagcctgctcacagctcatctgatcacttgcctgatggccatatcagcagtgtgcaggtccagattggtgatag cctttctcggggatctcccacaagtaacaaagatcagaaacacctgaacaatgctgtaatcaactcctccacaatctcac agattgggctatcacactcgcataacaatcagctgcaaatgacaagtgttttacctaaccaggcttcagattatgccaaa tatgcaactctcaaggctgtagaaagtgcccccgaagaattctacaagaggtttcccatggtggagatgccatcatcagg caccttgtcattttctcccctgacacttcatcaaaatgacctcccaccttttccagaaagcactgctctcattggcttgg ggacaccaggacagaaaactaaagtgatgaaaaccaatgcaggcagtcctgtcttcaaagggggctgggatcacagccat cctgaatttcgacgacaagcttatgccaccaggcgtcagttcagtattgagaagctgcctgaggtcttcagccaaacccc cactcattatgcccagcaacaacggcttttttccactaatagcaagactgaggtcactgtctaggatggatctatggttc attcctatattcttccctttgaagcagttggtgaagtagggcctgacagcttagaatgaagttgcttccctcaatgtgtc actcctagattctggaaggagacatagaagatataaagaaaagtagaatgcttgccaga |
Protein
Protein ID | habu1_s1233_g04268.t1 |
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Definition | - |
>habu1_s1233_g04268.t1 MRGAPGQGKSSTYDRLGSPRLTTGLVLDLRPVGDRGIKKTSSSSEGRISVVRTLTDLLKQPAHSSSDHLPDGHISSVQVQ IGDSLSRGSPTSNKDQKHLNNAVINSSTISQIGLSHSHNNQLQMTSVLPNQASDYAKYATLKAVESAPEEFYKRFPMVEM PSSGTLSFSPLTLHQNDLPPFPESTALIGLGTPGQKTKVMKTNAGSPVFKGGWDHSHPEFRRQAYATRRQFSIEKLPEVF SQTPTHYAQQQRLFSTNSKTEVTV |
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Protein ID | habu1_s1233_g04268.t2 |
Definition | - |
>habu1_s1233_g04268.t2 MRGAPGQGKSSTYDRLGSPRLTTGLVLDLRPVGDRGIKKKRESELQVEVKDNTTLGPILEDTIVAPTESIFGGDRCLGYY DVMGQWDPPFNCNSGIYNFCCGTCGYRFCCQFTSGKLDQSGCSNYETPEWVNTGQPPPRVDETPQNPTKDKTNMIVYIIC GVVAIMVLVGIFTKLGLEKSQSPQAEITMSRTLTDLLKQPAHSSSDHLPDGHISSVQVQIGDSLSRGSPTSNKDQKHLNN AVINSSTISQIGLSHSHNNQLQMTSVLPNQASDYAKYATLKAVESAPEEFYKRFPMVEMPSSGTLSFSPLTLHQNDLPPF PESTALIGLGTPGQKTKVMKTNAGSPVFKGGWDHSHPEFRRQAYATRRQFSIEKLPEVFSQTPTHYAQQQRLFSTNSKTE VTV |