Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s1233_g04268
Locus habu1_scaffold1233 : 802150 ... 874787 : -
To GenomeBrowser habu1_scaffold1233:802150..874787
Genes list of scaffold habu1_scaffold1233

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s1233_g04268.t2 1 1 Shisa 73 215 7.5e-37 127.2 3.4e-40 2.5e-36 125.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s1233_g04268.t2 gi|641792039|ref|XP_008177470.1| PREDICTED: putative protein shisa-8 isoform X1 [Chrysemys picta bellii] 0.0
habu1_s1233_g04268.t2 gi|591352918|ref|XP_007053407.1| PREDICTED: protein shisa-9-like [Chelonia mydas] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 0.1
Venom grand-1 0.0
Pit, infrared sensing 0.0
Nose 0.1
Brain-1 2.9
Eye 1.2
fetal fibroblast 0.0
venom gland-2 0.0
Brain-2 2.1
Spleen 0.2
Lung 0.3
Liver 0.0
Kidney 0.1
Pancreas 0.0
Small intestine 0.0
Large intestine 0.0
Stomach 0.0
heart 0.0
ovary 0.1
cheek muscle 0.0

Transcript
Transcript IDhabu1_s1233_g04268.t1
Definition-
>habu1_s1233_g04268.t1
gtcgccaagcaaggctgtccgccattttttttccctttttccggcgggtgagctgggccagctggtggtcggcctgttcc
gtctctgccgcttgccagctacgcctcgacggcgcagggggcagaaccacgcatgcgcggcgctcccgggcaaggaaagt
cctcgacttacgaccggttgggtagtcctcgacttacgaccggtttagtcctcgacttacgaccggttggggatcgcggc
attaaaaagacaagttccagttctgaaggcagaatctctgttgtaagaacactcacagatcttctaaagcagcctgctca
cagctcatctgatcacttgcctgatggccatatcagcagtgtgcaggtccagattggtgatagcctttctcggggatctc
ccacaagtaacaaagatcagaaacacctgaacaatgctgtaatcaactcctccacaatctcacagattgggctatcacac
tcgcataacaatcagctgcaaatgacaagtgttttacctaaccaggcttcagattatgccaaatatgcaactctcaaggc
tgtagaaagtgcccccgaagaattctacaagaggtttcccatggtggagatgccatcatcaggcaccttgtcattttctc
ccctgacacttcatcaaaatgacctcccaccttttccagaaagcactgctctcattggcttggggacaccaggacagaaa
actaaagtgatgaaaaccaatgcaggcagtcctgtcttcaaagggggctgggatcacagccatcctgaatttcgacgaca
agcttatgccaccaggcgtcagttcagtattgagaagctgcctgaggtcttcagccaaacccccactcattatgcccagc
aacaacggcttttttccactaatagcaagactgaggtcactgtctaggatggatctatggttcattcctatattcttccc
tttgaagcagttggtgaagtagggcctgacagcttagaatgaagttgcttccctcaatgtgtcactcctagattctggaa
ggagacatagaagatataaagaaaagtagaatgcttgccaga
Transcript IDhabu1_s1233_g04268.t2
Definition-
>habu1_s1233_g04268.t2
gtcgccaagcaaggctgtccgccattttttttccctttttccggcgggtgagctgggccagctggtggtcggcctgttcc
gtctctgccgcttgccagctacgcctcgacggcgcagggggcagaaccacgcatgcgcggcgctcccgggcaaggaaagt
cctcgacttacgaccggttgggtagtcctcgacttacgaccggtttagtcctcgacttacgaccggttggggatcgcggc
attaaaaagaaacgtgagtcagaactgcaggtggaggtcaaagacaataccacattgggtccgatcttagaggacacaat
tgtagcccccacagagtccatctttgggggagatcggtgccttggttattatgatgtaatgggccagtgggatcctccat
ttaactgcaattcagggatctacaatttttgctgtgggacttgtggttaccgcttctgctgtcaattcacaagtggaaaa
cttgatcaaagtggttgttcgaattatgagacaccggaatgggtcaacacaggccaaccaccacctcgagtggatgagac
tcctcagaatcctaccaaggacaagaccaacatgattgtatacattatctgtggtgtggtggccatcatggtgctggtgg
gtatcttcaccaaactgggactggagaaatcccagagccctcaagcagagattaccatgtccagaacactcacagatctt
ctaaagcagcctgctcacagctcatctgatcacttgcctgatggccatatcagcagtgtgcaggtccagattggtgatag
cctttctcggggatctcccacaagtaacaaagatcagaaacacctgaacaatgctgtaatcaactcctccacaatctcac
agattgggctatcacactcgcataacaatcagctgcaaatgacaagtgttttacctaaccaggcttcagattatgccaaa
tatgcaactctcaaggctgtagaaagtgcccccgaagaattctacaagaggtttcccatggtggagatgccatcatcagg
caccttgtcattttctcccctgacacttcatcaaaatgacctcccaccttttccagaaagcactgctctcattggcttgg
ggacaccaggacagaaaactaaagtgatgaaaaccaatgcaggcagtcctgtcttcaaagggggctgggatcacagccat
cctgaatttcgacgacaagcttatgccaccaggcgtcagttcagtattgagaagctgcctgaggtcttcagccaaacccc
cactcattatgcccagcaacaacggcttttttccactaatagcaagactgaggtcactgtctaggatggatctatggttc
attcctatattcttccctttgaagcagttggtgaagtagggcctgacagcttagaatgaagttgcttccctcaatgtgtc
actcctagattctggaaggagacatagaagatataaagaaaagtagaatgcttgccaga

Protein
Protein IDhabu1_s1233_g04268.t1
Definition-
>habu1_s1233_g04268.t1
MRGAPGQGKSSTYDRLGSPRLTTGLVLDLRPVGDRGIKKTSSSSEGRISVVRTLTDLLKQPAHSSSDHLPDGHISSVQVQ
IGDSLSRGSPTSNKDQKHLNNAVINSSTISQIGLSHSHNNQLQMTSVLPNQASDYAKYATLKAVESAPEEFYKRFPMVEM
PSSGTLSFSPLTLHQNDLPPFPESTALIGLGTPGQKTKVMKTNAGSPVFKGGWDHSHPEFRRQAYATRRQFSIEKLPEVF
SQTPTHYAQQQRLFSTNSKTEVTV
Protein IDhabu1_s1233_g04268.t2
Definition-
>habu1_s1233_g04268.t2
MRGAPGQGKSSTYDRLGSPRLTTGLVLDLRPVGDRGIKKKRESELQVEVKDNTTLGPILEDTIVAPTESIFGGDRCLGYY
DVMGQWDPPFNCNSGIYNFCCGTCGYRFCCQFTSGKLDQSGCSNYETPEWVNTGQPPPRVDETPQNPTKDKTNMIVYIIC
GVVAIMVLVGIFTKLGLEKSQSPQAEITMSRTLTDLLKQPAHSSSDHLPDGHISSVQVQIGDSLSRGSPTSNKDQKHLNN
AVINSSTISQIGLSHSHNNQLQMTSVLPNQASDYAKYATLKAVESAPEEFYKRFPMVEMPSSGTLSFSPLTLHQNDLPPF
PESTALIGLGTPGQKTKVMKTNAGSPVFKGGWDHSHPEFRRQAYATRRQFSIEKLPEVFSQTPTHYAQQQRLFSTNSKTE
VTV

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