Gene
| Gene Model ID | habu1_s1233_g04268 |
|---|---|
| Locus | habu1_scaffold1233 : 802150 ... 874787 : - |
| To GenomeBrowser | habu1_scaffold1233:802150..874787 |
| Genes list of scaffold | habu1_scaffold1233 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1233_g04268.t2 | 1 | 1 | Shisa | 73 | 215 | 7.5e-37 | 127.2 | 3.4e-40 | 2.5e-36 | 125.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1233_g04268.t2 | gi|641792039|ref|XP_008177470.1| | PREDICTED: putative protein shisa-8 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s1233_g04268.t2 | gi|591352918|ref|XP_007053407.1| | PREDICTED: protein shisa-9-like [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.0 |
| Nose | 0.1 |
| Brain-1 | 2.9 |
| Eye | 1.2 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.0 |
| Brain-2 | 2.1 |
| Spleen | 0.2 |
| Lung | 0.3 |
| Liver | 0.0 |
| Kidney | 0.1 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.0 |
| ovary | 0.1 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s1233_g04268.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04268.t1 gtcgccaagcaaggctgtccgccattttttttccctttttccggcgggtgagctgggccagctggtggtcggcctgttcc gtctctgccgcttgccagctacgcctcgacggcgcagggggcagaaccacgcatgcgcggcgctcccgggcaaggaaagt cctcgacttacgaccggttgggtagtcctcgacttacgaccggtttagtcctcgacttacgaccggttggggatcgcggc attaaaaagacaagttccagttctgaaggcagaatctctgttgtaagaacactcacagatcttctaaagcagcctgctca cagctcatctgatcacttgcctgatggccatatcagcagtgtgcaggtccagattggtgatagcctttctcggggatctc ccacaagtaacaaagatcagaaacacctgaacaatgctgtaatcaactcctccacaatctcacagattgggctatcacac tcgcataacaatcagctgcaaatgacaagtgttttacctaaccaggcttcagattatgccaaatatgcaactctcaaggc tgtagaaagtgcccccgaagaattctacaagaggtttcccatggtggagatgccatcatcaggcaccttgtcattttctc ccctgacacttcatcaaaatgacctcccaccttttccagaaagcactgctctcattggcttggggacaccaggacagaaa actaaagtgatgaaaaccaatgcaggcagtcctgtcttcaaagggggctgggatcacagccatcctgaatttcgacgaca agcttatgccaccaggcgtcagttcagtattgagaagctgcctgaggtcttcagccaaacccccactcattatgcccagc aacaacggcttttttccactaatagcaagactgaggtcactgtctaggatggatctatggttcattcctatattcttccc tttgaagcagttggtgaagtagggcctgacagcttagaatgaagttgcttccctcaatgtgtcactcctagattctggaa ggagacatagaagatataaagaaaagtagaatgcttgccaga |
|
| Transcript ID | habu1_s1233_g04268.t2 |
| Definition | - |
>habu1_s1233_g04268.t2 gtcgccaagcaaggctgtccgccattttttttccctttttccggcgggtgagctgggccagctggtggtcggcctgttcc gtctctgccgcttgccagctacgcctcgacggcgcagggggcagaaccacgcatgcgcggcgctcccgggcaaggaaagt cctcgacttacgaccggttgggtagtcctcgacttacgaccggtttagtcctcgacttacgaccggttggggatcgcggc attaaaaagaaacgtgagtcagaactgcaggtggaggtcaaagacaataccacattgggtccgatcttagaggacacaat tgtagcccccacagagtccatctttgggggagatcggtgccttggttattatgatgtaatgggccagtgggatcctccat ttaactgcaattcagggatctacaatttttgctgtgggacttgtggttaccgcttctgctgtcaattcacaagtggaaaa cttgatcaaagtggttgttcgaattatgagacaccggaatgggtcaacacaggccaaccaccacctcgagtggatgagac tcctcagaatcctaccaaggacaagaccaacatgattgtatacattatctgtggtgtggtggccatcatggtgctggtgg gtatcttcaccaaactgggactggagaaatcccagagccctcaagcagagattaccatgtccagaacactcacagatctt ctaaagcagcctgctcacagctcatctgatcacttgcctgatggccatatcagcagtgtgcaggtccagattggtgatag cctttctcggggatctcccacaagtaacaaagatcagaaacacctgaacaatgctgtaatcaactcctccacaatctcac agattgggctatcacactcgcataacaatcagctgcaaatgacaagtgttttacctaaccaggcttcagattatgccaaa tatgcaactctcaaggctgtagaaagtgcccccgaagaattctacaagaggtttcccatggtggagatgccatcatcagg caccttgtcattttctcccctgacacttcatcaaaatgacctcccaccttttccagaaagcactgctctcattggcttgg ggacaccaggacagaaaactaaagtgatgaaaaccaatgcaggcagtcctgtcttcaaagggggctgggatcacagccat cctgaatttcgacgacaagcttatgccaccaggcgtcagttcagtattgagaagctgcctgaggtcttcagccaaacccc cactcattatgcccagcaacaacggcttttttccactaatagcaagactgaggtcactgtctaggatggatctatggttc attcctatattcttccctttgaagcagttggtgaagtagggcctgacagcttagaatgaagttgcttccctcaatgtgtc actcctagattctggaaggagacatagaagatataaagaaaagtagaatgcttgccaga |
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Protein
| Protein ID | habu1_s1233_g04268.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04268.t1 MRGAPGQGKSSTYDRLGSPRLTTGLVLDLRPVGDRGIKKTSSSSEGRISVVRTLTDLLKQPAHSSSDHLPDGHISSVQVQ IGDSLSRGSPTSNKDQKHLNNAVINSSTISQIGLSHSHNNQLQMTSVLPNQASDYAKYATLKAVESAPEEFYKRFPMVEM PSSGTLSFSPLTLHQNDLPPFPESTALIGLGTPGQKTKVMKTNAGSPVFKGGWDHSHPEFRRQAYATRRQFSIEKLPEVF SQTPTHYAQQQRLFSTNSKTEVTV |
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| Protein ID | habu1_s1233_g04268.t2 |
| Definition | - |
>habu1_s1233_g04268.t2 MRGAPGQGKSSTYDRLGSPRLTTGLVLDLRPVGDRGIKKKRESELQVEVKDNTTLGPILEDTIVAPTESIFGGDRCLGYY DVMGQWDPPFNCNSGIYNFCCGTCGYRFCCQFTSGKLDQSGCSNYETPEWVNTGQPPPRVDETPQNPTKDKTNMIVYIIC GVVAIMVLVGIFTKLGLEKSQSPQAEITMSRTLTDLLKQPAHSSSDHLPDGHISSVQVQIGDSLSRGSPTSNKDQKHLNN AVINSSTISQIGLSHSHNNQLQMTSVLPNQASDYAKYATLKAVESAPEEFYKRFPMVEMPSSGTLSFSPLTLHQNDLPPF PESTALIGLGTPGQKTKVMKTNAGSPVFKGGWDHSHPEFRRQAYATRRQFSIEKLPEVFSQTPTHYAQQQRLFSTNSKTE VTV |
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