Gene
| Gene Model ID | habu1_s1233_g04277 |
|---|---|
| Locus | habu1_scaffold1233 : 1216322 ... 1228958 : - |
| To GenomeBrowser | habu1_scaffold1233:1216322..1228958 |
| Genes list of scaffold | habu1_scaffold1233 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ribosomal rna-processing protein 7 homolog a isoform x2 | GO:0000166 GO:0003676 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1233_g04277.t1 | 1 | 1 | RRM_1 | 58 | 89 | 2.1e-06 | 27.2 | 3.5e-08 | 7.4e-05 | 22.3 |
| habu1_s1233_g04277.t1 | 1 | 1 | RRP7 | 150 | 279 | 1.4e-40 | 138.3 | 8.82818e-44 | 1.90001e-40 | 137.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1233_g04277.t1 | gi|602662012|ref|XP_007436652.1| | PREDICTED: ribosomal RNA-processing protein 7 homolog A isoform X1 [Python bivittatus] | 0.0 |
| habu1_s1233_g04277.t1 | gi|641776443|ref|XP_008171461.1| | PREDICTED: ribosomal RNA-processing protein 7 homolog A isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s1233_g04277.t1 | gi|327287216|ref|XP_003228325.1| | PREDICTED: ribosomal RNA-processing protein 7 homolog A [Anolis carolinensis] | 0.0 |
| habu1_s1233_g04277.t1 | gi|558150597|ref|XP_006120588.1| | PREDICTED: ribosomal RNA-processing protein 7 homolog A [Pelodiscus sinensis] | 0.0 |
| habu1_s1233_g04277.t1 | gi|729719576|ref|XP_010561355.1| | PREDICTED: ribosomal RNA-processing protein 7 homolog A [Haliaeetus leucocephalus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.6 |
| Venom grand-1 | 7.2 |
| Pit, infrared sensing | 7.9 |
| Nose | 7.6 |
| Brain-1 | 7.1 |
| Eye | 8.7 |
| fetal fibroblast | 21.0 |
| venom gland-2 | 17.9 |
| Brain-2 | 8.0 |
| Spleen | 7.0 |
| Lung | 8.4 |
| Liver | 7.6 |
| Kidney | 5.9 |
| Pancreas | 9.8 |
| Small intestine | 6.3 |
| Large intestine | 6.4 |
| Stomach | 5.5 |
| heart | 7.6 |
| ovary | 31.3 |
| cheek muscle | 9.9 |
Transcript
| Transcript ID | habu1_s1233_g04277.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04277.t1 acgcagacacgaaaccaccctttgattttcccgggaaagcgattggtcccaagaaacctcgcgatactcagcagttgcga aagatgacgcaacttcctccgagccaaaatggcgacctccggctcgaagtgtgtgaaaaatggagaagctgtcgccacgc tgggatacacagctattccagtcaagttttctgagaagcaccagtcacctcattatctctatgtgaaagaacacaaagtc agagagggcagagatcccaagaggcctcaaaaccgaacactttttgtcctaaatattcctccatattgtacagaggaatg tttatcaaggctgttctccaacttttgccctatacaatctgtggagatgtgtgaaaggccaaagccaggagatgggacag aaacacccaggaccaaattcttcaataacaagatactcttgggattccaagtagcttatgtggtattcaaaagacctgct ggagtacaggctgccaaatcctcatcactacaagggccccatataatatcttcagagacccatcctgtgcagactggcat tcacaaatggattgctagatacgcagcctcaattgtggatcctgctgagctgaagacagaagttgactctttcatgcaaa attatgatcaaaagattgcaaaggaagaagccaaagctgaaaaggaagaaggtattcctgataaggaagggtgggtgaaa gtgacaaggaaaggccgaaagcctggccttccgtggacagaagcagccaatttgcaagccctagaaagagagaaacgcaa gagagcacgcaaggaactgctcaatttctatgcttggcaacatcgtgaaaccaagagagaacacatagcccagctaagga agaaatttgaagaagataagcagaaaattgctctcatgagagcacagcggaagttccgcccatactaacttggagaggtt gcagctgtccccagggcaacagtagccaaactaagaaattagtttttcattaagaaaccatctctgatctcttggctgaa ctcatgcctcagctgctgagtaaaaggtaccaactgcagtcacttg |
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Protein
| Protein ID | habu1_s1233_g04277.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04277.t1 MATSGSKCVKNGEAVATLGYTAIPVKFSEKHQSPHYLYVKEHKVREGRDPKRPQNRTLFVLNIPPYCTEECLSRLFSNFC PIQSVEMCERPKPGDGTETPRTKFFNNKILLGFQVAYVVFKRPAGVQAAKSSSLQGPHIISSETHPVQTGIHKWIARYAA SIVDPAELKTEVDSFMQNYDQKIAKEEAKAEKEEGIPDKEGWVKVTRKGRKPGLPWTEAANLQALEREKRKRARKELLNF YAWQHRETKREHIAQLRKKFEEDKQKIALMRAQRKFRPY |
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