Gene
| Gene Model ID | habu1_s1233_g04278 |
|---|---|
| Locus | habu1_scaffold1233 : 1232140 ... 1246288 : - |
| To GenomeBrowser | habu1_scaffold1233:1232140..1246288 |
| Genes list of scaffold | habu1_scaffold1233 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| polymerase delta-interacting protein 3 isoform x1 | GO:0000166 GO:0003676 GO:0016973 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1233_g04278.t2 | 1 | 1 | RRM_1 | 321 | 381 | 1.9e-10 | 40.2 | 9.2e-14 | 4.6e-10 | 38.9 |
| habu1_s1233_g04278.t2 | 1 | 1 | RRM_6 | 321 | 380 | 1.5e-08 | 34.4 | 7.2e-12 | 3.6e-08 | 33.2 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 11.8 |
| Venom grand-1 | 15.1 |
| Pit, infrared sensing | 15.0 |
| Nose | 13.5 |
| Brain-1 | 12.4 |
| Eye | 14.2 |
| fetal fibroblast | 19.2 |
| venom gland-2 | 14.0 |
| Brain-2 | 11.0 |
| Spleen | 11.7 |
| Lung | 14.3 |
| Liver | 18.1 |
| Kidney | 15.8 |
| Pancreas | 14.7 |
| Small intestine | 11.1 |
| Large intestine | 12.5 |
| Stomach | 13.3 |
| heart | 14.4 |
| ovary | 71.8 |
| cheek muscle | 18.5 |
Transcript
| Transcript ID | habu1_s1233_g04278.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04278.t1 cttttctcccggcctagagaaaatatggcggacttatctttggatgaactgatcaagaagcgcggcgttagtgtcaatac aaaagggagactgaacatgaggccggtctttggaggcattagatctcgaattggaagccagcaaacctttttaagcagat catcaaccagtgtcgggtttcagcagacatttgatgcacgtcaaaagattggtattactgatgctaggcacaaaattggt gtaaaagatgccagggagaaactgcttcagaaagacgcaaggttcaaaatcaaagggaaagttcaagatgcccgagagat gctaaactcccggaaacaacagagtatagaaaaggtgaccaaagttattgatgctagagagaaaattagtttgaaaagaa gtgctccagttgcagtccctatgaacaccattgtggaaacagtatctcctgctgtaaagatcacaaaaacaatacaacag aaggctacaattccatcgcatgctcattctgcaggtatgaaggtcaacattgtgaataatcacacccccaaacagtgcct atacgatacagaggatgatgatgaaactgtacctccctttcccaacaaacagatgaaaatcacagcaacaaatagcttcc tgaacaatgcagctggacacagcggcaacaagttttctctctcaaagacagtccctcttacaaaagttgtccagaacgat gcatatacagcccctccggtccctccttcccccatccgaacaaaagccctcacaaacatgtctagaaccttagtgaccaa ggaagaaccccctaaagagcctacggtggtcgagccagcctttagtcctttagagggtactaaaatgactgtgaataatt tacacccccgtgttacagaagaggatattgttgaattattctgtgtgtgtggtgccctaaagcgagctcgtctggtgaac cctgggatggctgaagttgtctttgtgaaaaaggaagatgccatcactgcatataagaaatataacaacagatgcttgga cggacaaccaatgaaatgtaatcttttcattaatggaaatgtcatcacatcagaccagcctattttgcttcgattgagtg acactccttcagtgaagaaagaaattgaaccacgtcggacaaacacaggaacgtcttcaaatcccccagccgaagtggat cctgacaccatcttgaaggcactcttcaaatcctcggggacttctgctactgtgcagcctacagagttcaaaatcaaact ttgaaaagtagcagccaaaagtggactagtaaactgagtgtggaaaattgggagacatgggaacacaattgttgtgttgg actgcactcaaacctttgtttttctacagttgctacctttcctgtacagtagtgttcccctaaatgtgtttgttttgttt tcatagttggaatttttgtcccaatatttctaatggaataatttcccctttctctactgaaatctgtatcaccatataac tcttcatttttttcacctgcctccccactgcagtatccagccagttaaaagtacacctagttaaaggtgtgataagcatt tattgtggctttcattcttttagtaaaaatggtgacccttttgctttatacaattaataaacatttcatttcaatgtatc tgt |
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| Transcript ID | habu1_s1233_g04278.t2 |
| Definition | - |
>habu1_s1233_g04278.t2 cttttctcccggcctagagaaaatatggcggacttatctttggatgaactgatcaagaagcgcggcgttagtgtcaatac aaaagggagtcgttacctgctagagagttcggttctgttgacccaccgtgagcagtgcgggggtgtcgggtggcaggaag gcagcgccagcgggtctccgggcgagaggggcacgggacgcagactgaacatgaggccggtctttggaggcattagatct cgaattggaagccagcaaacctttttaagcagatcatcaaccagtgtcgggtttcagcagacatttgatgcacgtcaaaa gattggtattactgatgctaggcacaaaattggtgtaaaagatgccagggagaaactgcttcagaaagacgcaaggttca aaatcaaagggaaagttcaagatgcccgagagatgctaaactcccggaaacaacagagtatagaaaaggtgaccaaagtt attgatgctagagagaaaattagtttgaaaagaagtgctccagttgcagtccctatgaacaccattgtggaaacagtatc tcctgctgtaaagatcacaaaaacaatacaacagaaggctacaattccatcgcatgctcattctgcaggtatgaaggtca acattgtgaataatcacacccccaaacagtgcctatacgatacagaggatgatgatgaaactgtacctccctttcccaac aaacagatgaaaatcacagcaacaaatagcttcctgaacaatgcagctggacacagcggcaacaagttttctctctcaaa gacagtccctcttacaaaagttgtccagaacgatgcatatacagcccctccggtccctccttcccccatccgaacaaaag ccctcacaaacatgtctagaaccttagtgaccaaggaagaaccccctaaagagcctacggtggtcgagccagcctttagt cctttagagggtactaaaatgactgtgaataatttacacccccgtgttacagaagaggatattgttgaattattctgtgt gtgtggtgccctaaagcgagctcgtctggtgaaccctgggatggctgaagttgtctttgtgaaaaaggaagatgccatca ctgcatataagaaatataacaacagatgcttggacggacaaccaatgaaatgtaatcttttcattaatggaaatgtcatc acatcagaccagcctattttgcttcgattgagtgacactccttcagtgaagaaagaaattgaaccacgtcggacaaacac aggaacgtcttcaaatcccccagccgaagtggatcctgacaccatcttgaaggcactcttcaaatcctcggggacttctg ctactgtgcagcctacagagttcaaaatcaaactttgaaaagtagcagccaaaagtggactagtaaactgagtgtggaaa attgggagacatgggaacacaattgttgtgttggactgcactcaaacctttgtttttctacagttgctacctttcctgta cagtagtgttcccctaaatgtgtttgttttgttttcatagttggaatttttgtcccaatatttctaatggaataatttcc cctttctctactgaaatctgtatcaccatataactcttcatttttttcacctgcctccccactgcagtatccagccagtt aaaagtacacctagttaaaggtgtgataagcatttattgtggctttcattcttttagtaaaaatggtgacccttttgctt tatacaattaataaacatttcatttcaatgtatctgt |
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Protein
| Protein ID | habu1_s1233_g04278.t1 |
|---|---|
| Definition | - |
>habu1_s1233_g04278.t1 MADLSLDELIKKRGVSVNTKGRLNMRPVFGGIRSRIGSQQTFLSRSSTSVGFQQTFDARQKIGITDARHKIGVKDAREKL LQKDARFKIKGKVQDAREMLNSRKQQSIEKVTKVIDAREKISLKRSAPVAVPMNTIVETVSPAVKITKTIQQKATIPSHA HSAGMKVNIVNNHTPKQCLYDTEDDDETVPPFPNKQMKITATNSFLNNAAGHSGNKFSLSKTVPLTKVVQNDAYTAPPVP PSPIRTKALTNMSRTLVTKEEPPKEPTVVEPAFSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVNPGMAEVVF VKKEDAITAYKKYNNRCLDGQPMKCNLFINGNVITSDQPILLRLSDTPSVKKEIEPRRTNTGTSSNPPAEVDPDTILKAL FKSSGTSATVQPTEFKIKL |
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| Protein ID | habu1_s1233_g04278.t2 |
| Definition | - |
>habu1_s1233_g04278.t2 MADLSLDELIKKRGVSVNTKGSRYLLESSVLLTHREQCGGVGWQEGSASGSPGERGTGRRLNMRPVFGGIRSRIGSQQTF LSRSSTSVGFQQTFDARQKIGITDARHKIGVKDAREKLLQKDARFKIKGKVQDAREMLNSRKQQSIEKVTKVIDAREKIS LKRSAPVAVPMNTIVETVSPAVKITKTIQQKATIPSHAHSAGMKVNIVNNHTPKQCLYDTEDDDETVPPFPNKQMKITAT NSFLNNAAGHSGNKFSLSKTVPLTKVVQNDAYTAPPVPPSPIRTKALTNMSRTLVTKEEPPKEPTVVEPAFSPLEGTKMT VNNLHPRVTEEDIVELFCVCGALKRARLVNPGMAEVVFVKKEDAITAYKKYNNRCLDGQPMKCNLFINGNVITSDQPILL RLSDTPSVKKEIEPRRTNTGTSSNPPAEVDPDTILKALFKSSGTSATVQPTEFKIKL |
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