Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s1233_g04280
Locus habu1_scaffold1233 : 1294052 ... 1296268 : -
To GenomeBrowser habu1_scaffold1233:1294052..1296268
Genes list of scaffold habu1_scaffold1233

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s1233_g04280.t1 gi|602662002|ref|XP_007436647.1| PREDICTED: UPF0562 protein C7orf55 homolog [Python bivittatus] 0.0
habu1_s1233_g04280.t1 gi|327287226|ref|XP_003228330.1| PREDICTED: UPF0562 protein C7orf55 homolog [Anolis carolinensis] 0.0
habu1_s1233_g04280.t1 gi|116004213|ref|NP_001070465.1| UPF0562 protein C7orf55 homolog [Bos taurus] 0.0
habu1_s1233_g04280.t1 gi|593718438|ref|XP_007105594.1| PREDICTED: UPF0562 protein C7orf55 homolog [Physeter catodon] 0.0
habu1_s1233_g04280.t1 gi|545882231|ref|XP_005657793.1| PREDICTED: UPF0562 protein C7orf55 homolog [Sus scrofa] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 10.2
Venom grand-1 27.1
Pit, infrared sensing 11.0
Nose 10.8
Brain-1 4.6
Eye 10.5
fetal fibroblast 9.3
venom gland-2 28.2
Brain-2 4.2
Spleen 7.9
Lung 10.6
Liver 17.9
Kidney 6.1
Pancreas 20.5
Small intestine 8.6
Large intestine 14.2
Stomach 10.9
heart 58.4
ovary 14.1
cheek muscle 31.8

Transcript
Transcript IDhabu1_s1233_g04280.t1
Definition-
>habu1_s1233_g04280.t1
cgcggaaatctcctctaatgggccgatgcgaaccctttcaagggccaaataaagcagagaattactttgaaagaaaaggc
tcaaagcttcccttgctttcctgctcttttcaaacgggtctgaaattcatcgatatattcgaattatttaacgctttccg
ttgtatcattattcctgactaatggatgagatgaagctctaacagttgaactgatagcaactacgttacaatacatcagg
aacaaaagattaggtatctatcacgtttgaaatgctcgcgtcccgctcaaatattgcgcttctataaagctgaagatgaa
aataacacgacctggaaagacccggttggtcttgtgagtttacactgcgtgctattgaaaagtgccagatcttttctttt
tgattgggctctctgattggctggatatcgcattccaatagcggaagcaagatggcgtctctcgggtcgccgctgcgcac
ttttcgcggtttactgagggagctccgttctgctctaggagggagcgatgtctgttacagaaacaaggcagcatatcgtt
acttgaaggaagctttccgctgccatcgggtaaccagtgaaaaactctgcaaagcccagcatgacttacattttcaggct
gctacttatctctgtcttctgcgtagtatccgggaacacttagtactacataaggaatatcatggcaaaggagaacgatc
accagacatagtggcaggacttgtaggatttaaactaccacaacaacctggaggaaagggatgggaaccataaatgtggt
ttaactatttcataagaatttttgagctgtatttttttttcaaaatggtctgtttaaataaaaatgtatatcatacagaa
tttc

Protein
Protein IDhabu1_s1233_g04280.t1
Definition-
>habu1_s1233_g04280.t1
MASLGSPLRTFRGLLRELRSALGGSDVCYRNKAAYRYLKEAFRCHRVTSEKLCKAQHDLHFQAATYLCLLRSIREHLVLH
KEYHGKGERSPDIVAGLVGFKLPQQPGGKGWEP

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