Gene
| Gene Model ID | habu1_s1235_g04290 |
|---|---|
| Locus | habu1_scaffold1235 : 37240 ... 159685 : - |
| To GenomeBrowser | habu1_scaffold1235:37240..159685 |
| Genes list of scaffold | habu1_scaffold1235 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| epithelial membrane protein 1 | GO:0016021 GO:0016049 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1235_g04290.t1 | 1 | 1 | PMP22_Claudin | 1 | 138 | 4.1e-39 | 133.8 | 6.8005e-42 | 5.6e-39 | 133.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1235_g04290.t1 | gi|602632773|ref|XP_007423274.1| | PREDICTED: epithelial membrane protein 1 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s1235_g04290.t1 | gi|530644605|ref|XP_005308976.1| | PREDICTED: epithelial membrane protein 1 [Chrysemys picta bellii] | 0.0 |
| habu1_s1235_g04290.t1 | gi|327283910|ref|XP_003226683.1| | PREDICTED: epithelial membrane protein 1 [Anolis carolinensis] | 0.0 |
| habu1_s1235_g04290.t1 | gi|591379144|ref|XP_007064121.1| | PREDICTED: epithelial membrane protein 1 [Chelonia mydas] | 0.0 |
| habu1_s1235_g04290.t1 | gi|558104137|ref|XP_006110472.1| | PREDICTED: epithelial membrane protein 1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 13.5 |
| Venom grand-1 | 4.7 |
| Pit, infrared sensing | 15.8 |
| Nose | 10.3 |
| Brain-1 | 0.7 |
| Eye | 8.4 |
| fetal fibroblast | 4.3 |
| venom gland-2 | 3.6 |
| Brain-2 | 0.6 |
| Spleen | 0.9 |
| Lung | 12.6 |
| Liver | 0.0 |
| Kidney | 0.2 |
| Pancreas | 0.1 |
| Small intestine | 0.9 |
| Large intestine | 6.3 |
| Stomach | 4.7 |
| heart | 3.6 |
| ovary | 0.3 |
| cheek muscle | 1.5 |
Transcript
| Transcript ID | habu1_s1235_g04290.t1 |
|---|---|
| Definition | - |
>habu1_s1235_g04290.t1 atccaagaaaacagggtggagtggattattatttttttcattctccccgtaaagagagtctgattcattgaaacttctca aacccagtcaaaggacaccacccaactgaatatcccaatacaacagctgggaaaacttataaccccaccagctggggcac tccttacagtgcatctctgattttcaaggcagcaggaggacaagcagaggaagctctcttcacagaagtcctttcaccaa gacttctctgcctctgagattgttcctgaagtgaggagccaagatgttggtactactggctggaatttttgtggttcata ttgccactgtcatcatgctctttgtctccactattgctaatgtctggatggtaaccaccatttctgacaaaacaaactcc tcaggactctggaagcaatgttcagaaagcagttgccagaaccttgttgttaacaatgatgacatggctgccctcaaggc tgtgcaggccttcatgatcctgtccatcatcttctccttcatttctttggtcatgttcgtggtacagctcttcaccatgg agaaggggaaacgcttctacatcacgggagccattatgctgatttgctggctgtttattttgattgctgcctcgatctat actgcccgatttcctcagtattacaaagacggtcaccatggatattcctttatactgttccattccatctttcgatctgc tcttattacatcttcgatcctgtgtcgttcttttggagatgtatatgaaaagatgatactctggagatggaacaccagaa gtgatgtctggagcaatgctgaaggaagacaaagggagaatccagccaaacacaaaatgttctctagagccctctcccca ctcagtgtgccgagagaaaaagccaacaaattattgagctatgatatccagctggattggaagcaagaccatggtgacgg gggcagtggttccattcctacttgagtgatcaagtctgaaaatgagcatttttgattgtagacctggtggaaacaatcac agctatgaaaaagaagtatctggcttgctgctacaaagctcaaccaagaggaatctactaagaaggaaaggaaaggaaag aaagagggaataactttcactgcaaacgatgagccaggaaggagaaaaatgctggttttgtgaatataaataattttctc cagactcttaaggaaatgataaacaattgtgaatacatatacaagaaatgcttatgttgttgttggctgaaaatcctaat tactgacagcaaattaaactatcatatgccaaaataggagtagtcaatgggaaaagtgtaatgaacaattacaagttgta caagttgagtaaaaatctaaagcaagtagatgaatttatgaagtctgttagaaggtgaaagatggaaaaacagatggaaa aatggaaatgctgatagaatgatggcaggtagtatgtgctttgtttgaaaaaaataaatgtttcttaaataagtcagaaa |
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Protein
| Protein ID | habu1_s1235_g04290.t1 |
|---|---|
| Definition | - |
>habu1_s1235_g04290.t1 MLVLLAGIFVVHIATVIMLFVSTIANVWMVTTISDKTNSSGLWKQCSESSCQNLVVNNDDMAALKAVQAFMILSIIFSFI SLVMFVVQLFTMEKGKRFYITGAIMLICWLFILIAASIYTARFPQYYKDGHHGYSFILFHSIFRSALITSSILCRSFGDV YEKMILWRWNTRSDVWSNAEGRQRENPAKHKMFSRALSPLSVPREKANKLLSYDIQLDWKQDHGDGGSGSIPT |
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