Gene
| Gene Model ID | habu1_s1235_g04295 |
|---|---|
| Locus | habu1_scaffold1235 : 328931 ... 344015 : - |
| To GenomeBrowser | habu1_scaffold1235:328931..344015 |
| Genes list of scaffold | habu1_scaffold1235 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx47 | GO:0003676 GO:0004386 GO:0005524 GO:0008152 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1235_g04295.t1 | 1 | 1 | DEAD | 63 | 230 | 0.0 | 157.5 | 0.0 | 0.0 | 156.8 |
| habu1_s1235_g04295.t1 | 1 | 1 | Helicase_C | 297 | 373 | 9.9e-29 | 99.0 | 2.5e-31 | 1.2e-27 | 95.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1235_g04295.t1 | gi|602632761|ref|XP_007423268.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 [Python bivittatus] | 0.0 |
| habu1_s1235_g04295.t1 | gi|557282655|ref|XP_006024226.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform X2 [Alligator sinensis] | 0.0 |
| habu1_s1235_g04295.t1 | gi|530644613|ref|XP_005308980.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s1235_g04295.t1 | gi|564261662|ref|XP_006269723.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 [Alligator mississippiensis] | 0.0 |
| habu1_s1235_g04295.t1 | gi|591379138|ref|XP_007064118.1| | PREDICTED: probable ATP-dependent RNA helicase DDX47 [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.5 |
| Venom grand-1 | 11.0 |
| Pit, infrared sensing | 5.7 |
| Nose | 5.3 |
| Brain-1 | 4.0 |
| Eye | 5.2 |
| fetal fibroblast | 16.8 |
| venom gland-2 | 15.7 |
| Brain-2 | 4.4 |
| Spleen | 6.4 |
| Lung | 6.3 |
| Liver | 5.6 |
| Kidney | 5.0 |
| Pancreas | 6.4 |
| Small intestine | 5.2 |
| Large intestine | 6.1 |
| Stomach | 5.8 |
| heart | 6.1 |
| ovary | 19.9 |
| cheek muscle | 6.7 |
Transcript
| Transcript ID | habu1_s1235_g04295.t1 |
|---|---|
| Definition | - |
>habu1_s1235_g04295.t1 gtctttaggatcaataatgctctgtaacattcaagagcctcccacaggagctttgggcaatgggaaaagagattataaga attaggcacctctttctgtattgagaactccggtttccatttaaagaaactaatctagggacccatttctgagttccaaa aacccggacgatcaacagcggcagagttttctatatctctttaccgtttgctgccgttttccagatttttgcatctccat aggtgatagacataatctagtgggaacccgatgtaaatccctggggaaatacaagttttgctaaacgtaggaattctagg cttgccgtaaagtacgacacctgccgatctttgtgggcggggcaaatggaagcatttggactcccagtcccaagatgctt cgcgatatctctgaggttaaaggtgacgcggaatatggcgacgagcatggagcacggggacgatgcgggagagattgcgg aaactttcaaacgactgggagtgacagatgtactgtgtgaagcatgcagccagttaggatggaagacaccaacaaagatc caggtagaagctattccagttgcactccaaggtcgggacatcattggcttagcagagacaggatctggaaaaacaggggc ttttgctttgcccatccttcaggcattattagaaactccccagcgcttctttgctctggtgcttacacccacccgggagt tagcctttcagatttccgaacaatttgaggctcttggatcttccattggtgttcagagtactgtcattgttggaggaatt gacatgatgtcgcaatctctggccctagccaagaagccccatgtaattattgctacgcctggtcgtcttattgatcatct tgagaatacaaagggtttcaatcttagagctctgaaatacctagttatggatgaagctgaccgcatcctcaacatggact ttgaaacagaggtagataaaatcctgaaagtaattcccagagacaggaagacatttctcttttctgctacgatgactaaa aaggtgcaaaaactccagcgtgcagcccttaaagaccctgtgaaatgtgcagtgtcatcaaaataccagacagttgaaaa acttcagcaatactatatttttattccttccaagttcaaggatagttatcttgtgtacattctgaatgaacttgctggca actcattcatgatattctgcagtacatgcaacaatactcagaggacggcactcttgcttcgaaatttgggctttactgct attcccctccatggacagatgagccagaataaacgattaggatcactgaacaagttcaaggctaaaacacggtccatctt gttggcaactgatgttgcaagtagaggccttgacatccctcatgttgatgtagtgataaactttgacattcctacccatt ccaaggattacattcatcgagtagggagaacagctcgagctggacgatctggtaaatcgatcaccttcgtgacacagtat gatgtggaactcttccagcgcattgagcacttgattggcaaaaagctgccagcctttcccactcaagaagaagaggtcat gatgttgaccgagcgtgtggctgaagcccagagatttgctcgcatggaattgcggcaacaaggggaaaagaagaaacgct ttcgagacgagacaaatgaggatgaggatgatgatgcagaaggagcgttgggagtcaggaacaaagttgctggaggaaaa aaaaagaaatggaaagttcagaaataaatagcatcaggctttatttctccatatttttatgcagtttggaatcctggaat catcagtccaacatcattatcagaatgactttcaaggactcatgaagaatatctcagcaaatttagcagtccacgttcat ggatataactaggaatgactgtccttgcaaacctgggaaatcttttaacattggaggagtcttattagtctctagcagca gttggtattcctctgaagaaagcagaagagaacagattccatatattctttatggacaaaggaattgagaatatgacaga agcttttcagtctgttgccacccaagttacagtcaattatttttacagcccatatttatttaataagataatttgcaaaa acatggggtgcagtgggggagaaaaaagtaatgtattctaatattcaagatgtgtcagcaaatagcagactaataagatt cttgaatattaaagggaaagacttgatagagaggagaattaaaaaaaactgctaaattttgtgtttgcttattcacataa ttgtgctacggctgcaacttctccgtttcctttctcaatttacagtatctgacattcagccatatttatttgtttcagtc tgttatgaatgcatctgtggactctgcagtttagtaacctcaccattaactttgtagtaaagaagttctataaactgatc attttttctgcaggtcattcctgaggcaattctgcttgacagccgacactaagaggcgctcttcttttacataaggtcta tgccagagtgaattgtctgctaaaattgattgctcataaagcaaaaatccaaagacacgcccagggattggaatgagaga gcaccgttgcaagtttgtcatcattttctaccttacagtttccactgtgactcacttcttgactattaaaaaagaaactt cacccaaacatatcagataatcagataatgtttgatccaggacattttatactaagattttgaaacttaattttttacat ttttgttgctatcacaaagcttataagagggagagaggcctgtatatagcaaggatttataagtacatatgccatagcct aatgggcactacatttccaattactgggaataaacagccatttataactataggaaaaaattataacaaagcaaaatttg tccacttgcaatagaagtggtttcttattttattttataagtaatctaataaattttatttcaattattttgtgaagaat tggtggtatctgcattgatgaaggatggccagcttcgggaaattgaaataaaaattcttgagggcaagaatatgctttga atgccaccacttaacagtcttttcttctgcagaaaaattggatcttagagtctcaagcagtttttatttcagtgtataat ttggggcagctatttacattcctcaaataagaattctttacccatccattgaaaatcagccagggatctacctgtagttt atgcttcccataatcagaaacattagacgtttacccatttttcaagaaaatttatttgtttagaaattgatatggccacc tagcttatacaagataatcttaggcagttcacagtaatctatataaataaaaatgtaaatgttcgtttgttca |
|
Protein
| Protein ID | habu1_s1235_g04295.t1 |
|---|---|
| Definition | - |
>habu1_s1235_g04295.t1 MEAFGLPVPRCFAISLRLKVTRNMATSMEHGDDAGEIAETFKRLGVTDVLCEACSQLGWKTPTKIQVEAIPVALQGRDII GLAETGSGKTGAFALPILQALLETPQRFFALVLTPTRELAFQISEQFEALGSSIGVQSTVIVGGIDMMSQSLALAKKPHV IIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVK CAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGS LNKFKAKTRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKK LPAFPTQEEEVMMLTERVAEAQRFARMELRQQGEKKKRFRDETNEDEDDDAEGALGVRNKVAGGKKKKWKVQK |
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