Gene
| Gene Model ID | habu1_s1235_g04297 |
|---|---|
| Locus | habu1_scaffold1235 : 358758 ... 377125 : - |
| To GenomeBrowser | habu1_scaffold1235:358758..377125 |
| Genes list of scaffold | habu1_scaffold1235 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1235_g04297.t1 | 1 | 1 | F5_F8_type_C | 89 | 215 | 5.4e-10 | 39.2 | 2.5e-12 | 1.2e-08 | 34.8 |
| habu1_s1235_g04297.t1 | 1 | 1 | Pentaxin | 247 | 440 | 8.09951e-42 | 142.8 | 2.8026e-45 | 1.19993e-41 | 142.3 |
| habu1_s1235_g04297.t1 | 1 | 1 | Laminin_G_3 | 256 | 408 | 5.3e-06 | 26.7 | 1.9e-09 | 9.3e-06 | 25.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1235_g04297.t1 | gi|602632783|ref|XP_007423279.1| | PREDICTED: pentraxin fusion protein-like [Python bivittatus] | 0.0 |
| habu1_s1235_g04297.t1 | gi|637301954|ref|XP_008109084.1| | PREDICTED: uncharacterized protein LOC100563079 [Anolis carolinensis] | 0.0 |
| habu1_s1235_g04297.t1 | gi|591379198|ref|XP_007064147.1| | PREDICTED: pentraxin fusion protein-like [Chelonia mydas] | 0.0 |
| habu1_s1235_g04297.t1 | gi|160774247|gb|AAI55487.1| | LOC100127855 protein [Xenopus (Silurana) tropicalis] | 0.0 |
| habu1_s1235_g04297.t1 | gi|1346926|sp|P49263.1|PXN1_XENLA | Pentraxin fusion protein [Xenopus laevis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.8 |
| Venom grand-1 | 0.7 |
| Pit, infrared sensing | 0.8 |
| Nose | 0.5 |
| Brain-1 | 0.1 |
| Eye | 1.0 |
| fetal fibroblast | 0.7 |
| venom gland-2 | 0.7 |
| Brain-2 | 0.2 |
| Spleen | 0.4 |
| Lung | 0.6 |
| Liver | 0.0 |
| Kidney | 0.4 |
| Pancreas | 0.6 |
| Small intestine | 0.5 |
| Large intestine | 0.3 |
| Stomach | 0.6 |
| heart | 1.6 |
| ovary | 2.9 |
| cheek muscle | 2.8 |
Transcript
| Transcript ID | habu1_s1235_g04297.t1 |
|---|---|
| Definition | - |
>habu1_s1235_g04297.t1 cttccgaaaagtgtggggagggagcggggaatagcaggtttccgcctctatctgttccctttttcccccacttctgtgaa gagatggcccggacgaagcagacggctcggaagtcaaccggcggcaaagcgccccgcaagcagctggcgaccaaggctgc ccgcaagagcgccccggctacgggcggcgtgaagaagcctcaccgctaccgcccgggcaccgtggcnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnttcgcaaatagacaaggggcaagccgtttatgaaagggttaaaattatgggacttcaaggagat cctaatgtagcagtgggaaaactatcatcccagtctagtacatttgaagaaaaaggggagtcaaggaaggccattgatgg atccctggcaaatatctacacaaatggagactgtactctgacaaagaaggattttgagccctggtggatggtagatttga tttcagcctttcaggtatctgcagtggtgatcacaaacagaggagattgttgtgagtcatggataaaaggagctgagatt ctgattggagatttgccgcagaagggcggcacgatgaatcccaggtgtactacaatcaacagcatgggacgtggggaaac catgtcatttaattgtgcaggcatgcaaggacagtatgtgaccatcacaatccctgggagatatgaattcctaacactct gtgaagtgcaggtgcttgcacatccatggcttcatatagttcatgatggaggatggagtcctgttcgagacagtgatact gattcaggtctacaaggcagagttctgagtttccccaatgaagcaaaaggcagttttgtgatcatatccccaatgcagcc tttgaatctgatggaattcacactctgtatgagggttgcagtagagtatttagatgaacacagaataattctcttttcct accattctcaaagtgatgaattgagaatcttgcgtgaagcaatgggccactttggtttacacatgggtggtcagagtgtg aggtttgcccttcctgatctcagcactttggggagtcacatctgtgtcacctgggagtcagcatttggccttacagcctt ttggatgaatggaaaaagtagtatccgaaaagtgcataatatgggacacattctccaagcaggtggcacagcaatgcttg gacgggatcaaggtgcacaaaatatgcctgatcagcaaaagccacattttgtgggagaaatatcagatctctacatgtgg gattatgtactgaaatctcatgatatagagaaagttttgcaggcccatgaatttcccaggggaaacatctttgactggaa aacattgtcatataaaattataggtaatgtgatggtgttgcctaagggctaataattctgtgtgtatacataaatatgta tggaaatactgtcctattatgttgggcagcaagcaaataagattattagtatgaaatctaagatgttgaaacttaactag tgagcattttgttcttagtttgtaattattcatgctgaaattccttgaattaacccatataataaatataataaaattgt cttatgaataacaagtt |
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Protein
| Protein ID | habu1_s1235_g04297.t1 |
|---|---|
| Definition | - |
>habu1_s1235_g04297.t1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVXXXXXXXXXXXSQIDKGQAVYERVKIMGLQGDP NVAVGKLSSQSSTFEEKGESRKAIDGSLANIYTNGDCTLTKKDFEPWWMVDLISAFQVSAVVITNRGDCCESWIKGAEIL IGDLPQKGGTMNPRCTTINSMGRGETMSFNCAGMQGQYVTITIPGRYEFLTLCEVQVLAHPWLHIVHDGGWSPVRDSDTD SGLQGRVLSFPNEAKGSFVIISPMQPLNLMEFTLCMRVAVEYLDEHRIILFSYHSQSDELRILREAMGHFGLHMGGQSVR FALPDLSTLGSHICVTWESAFGLTAFWMNGKSSIRKVHNMGHILQAGGTAMLGRDQGAQNMPDQQKPHFVGEISDLYMWD YVLKSHDIEKVLQAHEFPRGNIFDWKTLSYKIIGNVMVLPKG |
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