Gene
| Gene Model ID | habu1_s1235_g04298 |
|---|---|
| Locus | habu1_scaffold1235 : 377276 ... 378145 : - |
| To GenomeBrowser | habu1_scaffold1235:377276..378145 |
| Genes list of scaffold | habu1_scaffold1235 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| histone -like | GO:0000786 GO:0003677 GO:0005634 GO:0006334 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1235_g04298.t1 | 1 | 1 | Linker_histone | 40 | 111 | 7.1e-21 | 74.0 | 1.1e-24 | 1.7e-20 | 72.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1235_g04298.t1 | gi|527264207|ref|XP_005150327.1| | PREDICTED: histone H1.10-like [Melopsittacus undulatus] | 0.0 |
| habu1_s1235_g04298.t1 | gi|591379134|ref|XP_007064116.1| | PREDICTED: histone H1.03-like [Chelonia mydas] | 1.4013e-45 |
| habu1_s1235_g04298.t1 | gi|558175152|ref|XP_006125977.1| | PREDICTED: histone H1-like [Pelodiscus sinensis] | 6.02558e-44 |
| habu1_s1235_g04298.t1 | gi|530644644|ref|XP_005308995.1| | PREDICTED: histone H1-like [Chrysemys picta bellii] | 1.0e-39 |
| habu1_s1235_g04298.t1 | gi|558175042|ref|XP_006125951.1| | PREDICTED: histone H1-like [Pelodiscus sinensis] | 2.0e-38 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.9 |
| Venom grand-1 | 1.9 |
| Pit, infrared sensing | 1.2 |
| Nose | 2.0 |
| Brain-1 | 0.3 |
| Eye | 0.4 |
| fetal fibroblast | 0.4 |
| venom gland-2 | 0.7 |
| Brain-2 | 0.1 |
| Spleen | 1.4 |
| Lung | 0.5 |
| Liver | 0.0 |
| Kidney | 0.2 |
| Pancreas | 4.7 |
| Small intestine | 0.2 |
| Large intestine | 0.4 |
| Stomach | 0.3 |
| heart | 1.3 |
| ovary | 1.3 |
| cheek muscle | 4.7 |
Transcript
| Transcript ID | habu1_s1235_g04298.t1 |
|---|---|
| Definition | - |
>habu1_s1235_g04298.t1 gaccaatcacaaagcagctcagctctataaataaacagcggctgacctacttgagctcactttttgtgtttggagatttt ttttttatttagttctctcagcgatcatgtctgaaacggcgcctgctgttgcggttacggccgcggctcctgctgtaact tcgaaagctccggctaagaaggcgaagaaagcgggagcggcgaaagcgcgcaaggcggcgggtcccagcgtcaccgagct gatcactaaggcggtggccgcttccaaggagcgcaaaggggtgtctctggctgctttgaagaaagccttggccgctgggg gctacgatgtggagaagaacaacagccgcatcaaactgggtctcaagagcctggtgagcaaagggatcctggtgcatacg aagggaatcggtgcttccggctctttcaaactcggcaagaaatcgggcgaagggaaagagaaagcgcccaaaaagaaagc agctaagcctaagaagccggtggccaagaagcccgcgagtggcatcaagaagcccaaaaaggcagcggcggccaagaaga gtccgaagaaacccaaaaagcccgcggcggctaagaaggccaccaagagccccaaaaaggctaaaccggtcaagcccaag aaagtcgccaaaagcccggccaaagcgaaggctgtgaagccgaagacggccaagaccaagaccaagcctaaggcggccaa agggaggaaggcggcgcccaagaagaagtaaatccagacttggcccgtggttgcttttctaaaaacccaaaggctctttt aagagccacccacgaaatccaaaagagagctgttgtccgctcagtaaaacactgagtgctttaatatcgt |
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Protein
| Protein ID | habu1_s1235_g04298.t1 |
|---|---|
| Definition | - |
>habu1_s1235_g04298.t1 MSETAPAVAVTAAAPAVTSKAPAKKAKKAGAAKARKAAGPSVTELITKAVAASKERKGVSLAALKKALAAGGYDVEKNNS RIKLGLKSLVSKGILVHTKGIGASGSFKLGKKSGEGKEKAPKKKAAKPKKPVAKKPASGIKKPKKAAAAKKSPKKPKKPA AAKKATKSPKKAKPVKPKKVAKSPAKAKAVKPKTAKTKTKPKAAKGRKAAPKKK |
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