Gene
| Gene Model ID | habu1_s1235_g04301 |
|---|---|
| Locus | habu1_scaffold1235 : 419335 ... 443245 : - |
| To GenomeBrowser | habu1_scaffold1235:419335..443245 |
| Genes list of scaffold | habu1_scaffold1235 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1235_g04301.t3 | 1 | 1 | CAF1 | 3 | 365 | 0.0 | 159.8 | 0.0 | 0.0 | 159.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1235_g04301.t3 | gi|557277778|ref|XP_006021973.1| | PREDICTED: poly(A)-specific ribonuclease PARN-like domain-containing protein 1 isoform X2 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.2 |
| Pit, infrared sensing | 0.7 |
| Nose | 0.3 |
| Brain-1 | 0.3 |
| Eye | 0.4 |
| fetal fibroblast | 1.6 |
| venom gland-2 | 0.2 |
| Brain-2 | 0.3 |
| Spleen | 0.2 |
| Lung | 0.2 |
| Liver | 0.2 |
| Kidney | 1.4 |
| Pancreas | 0.5 |
| Small intestine | 0.2 |
| Large intestine | 0.7 |
| Stomach | 0.7 |
| heart | 1.1 |
| ovary | 10.9 |
| cheek muscle | 0.6 |
Transcript
| Transcript ID | habu1_s1235_g04301.t1 |
|---|---|
| Definition | - |
>habu1_s1235_g04301.t1 ccgcggagagaaagcagcgagggcgggatggatgtgggggccgcacagtttccaggaatgttgcctcggttagaggagct tatccttggctgcgactttgtcggccttgatatggaattcacaggtttgtccatattttgcaaggggatgtcaaatgagt atatcgtgcattcatataacttcttcctattccctgccatatttggccaaatggattctgagttctcctgtaaagcatct agtattcagttcctgtctcattatggctttgactataacaagtttcttaaagatggaatcccttatatgaatgaaacaca agagaagaaacttcagcatctgttatctggtaattggatggtccaaagttttgataaagacaaagtgaaaaaagtgattg atcaagtaacttgttggatatcctcagcagaagaggaagattctgtggttctgcaggatgtatatggctttcaagtgatt gaactacagcttattctaagaaaagcttttccagatatttggactattcctttggaagatgaaaaattgatggtgaaaaa gatgaatccacaataccgctgggtcctggaaaacactgcttttgatccttgtcaaagagaacaaattcttttttccgcaa ggggcttcaccaatatttttcagacacttgtgagagctaagaagccgctggtgggacacaatatgctgatggatctcctc tatctacatgagaaattttacaaaccccttcctgaaaagtatgaagaattcaaagataaccttcactttctgtttcctgt tcttttggatacgaagaacattgccaaagccacgtggaaggaatttcagtttcctcaagtttcttatcttttggagttgt atgaaatgctgtgcagtgttgtgagtccaacagaccagctttgtccagagatctttcactcagatgattgcctcagatac gctacagataagtgtcctcatgaggccgcctatgatgcattcctctgtggagcagttcttcttaaaatagctcatttgct cctttgcagaaaaactggtgatcaaacagcagcacccactttttctcagtacattgatgtattagctgcatatgtgaatc aggtgaacttaattcgaggtggagttcagaaaattaatttttctggcctggatgacctgacaacacgtccccccctccta ttagccactgtgaaggggtggcatggggtaactgaagagcagattcatcaagagttgaggactttctgtaggtttgatgt ctgtcggctaagagtgaaccagtttctcctgctcgccaataattttaaagacatcaggatagttctgaaagcatataagg cccatcctaacctacagatttccgtgtatcaccgttggaagcattctccacgagtgtctagcttcctacaaatatgtggc attgtggcttcttggtctctgctggctttcttgcttggagggtcttatagttgccgtgtgtaacagctcatccactagaa atgcttggtttctttttctctcaatgtaagctgtacaataatagattaaaacactttgcaatgatcccaaag |
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| Transcript ID | habu1_s1235_g04301.t2 |
| Definition | - |
>habu1_s1235_g04301.t2 ccgcggagagaaagcagcgagggcgggatggatgtgggggccgcacagtttccaggaatgttgcctcggttagaggagct tatccttggctgcgactttgtcggccttgatatggaattcacaggtttgtattctgacaggcagcctagtcgctttgatt tacctgctgagtggtatcgcaaagccagacagagtgttcagcggtttacagtgaatcaacttggtttgtccatattttgc aaggggatgtcaaatgagtatatcgtgcattcatataacttcttcctattccctgccatatttggccaaatggattctga gttctcctgtaaagcatctagtattcagttcctgtctcattatggctttgactataacaagtttcttaaagatggaatcc cttatatgaatgaaacacaagagaagaaacttcagcatctgttatctggtaattggatggtccaaagttttgataaagac aaagtgaaaaaagtgattgatcaagtaacttgttggatatcctcagcagaagaggaagattctgtggttctgcaggatgt atatggctttcaagtgattgaactacagcttattctaagaaaagcttttccagatatttggactattcctttggaagatg aaaaattgatggtgaaaaagatgaatccacaataccgctgggtcctggaaaacactgcttttgatccttgtcaaagagaa caaattcttttttccgcaaggggcttcaccaatatttttcagacacttgtgagagctaagaagccgctggtgggacacaa tatgctgatggatctcctctatctacatgagaaattttacaaaccccttcctgaaaagtatgaagaattcaaagataacc ttcactttctgtttcctgttcttttggatacgaagaacattgccaaagccacgtggaaggaatttcagtttcctcaagtt tcttatcttttggagttgtatgaaatgctgtgcagtgttgtgagtccaacagaccagctttgtccagagatctttcactc agatgattgcctcagatacgctacagataagtgtcctcatgaggccgcctatgatgcattcctctgtggagcagttcttc ttaaaatagctcatttgctcctttgcagaaaaactggtgatcaaacagcagcacccactttttctcagtacattgatgta ttagctgcatatgtgaatcaggtgaacttaattcgaggtggagttcagaaaattaatttttctggcctggatgacctgac aacacgtccccccctcctattagccactgtgaaggggtggcatggggtaactgaagagcagattcatcaagagttgagga ctttctgtaggtttgatgtctgtcggctaagagtgaaccagtttctcctgctcgccaataattttaaagacatcaggata gttctgaaagcatataaggcccatcctaacctacagatttccgtgtatcaccgttggaagcattctccacgagtgtctag cttcctacaaatatgtggcattgtggcttcttggtctctgctggctttcttgcttggagggtcttatagttgccgtgtgt aacagctcatccactagaaatgcttggtttctttttctctcaatgtaagctgtacaataatagattaaaacactttgcaa tgatcccaaag |
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| Transcript ID | habu1_s1235_g04301.t3 |
| Definition | - |
>habu1_s1235_g04301.t3 ccgcggagagaaagcagcgagggcgggatggatgtgggggccgcacagtttccaggaatgttgcctcggttagaggagct tatccttggctgcgactttgtcggccttgatatggaattcacaggtttgtattctgacaggcagcctagtcgctttgatt tacctgctgagtggtatcgcaaagccagacagagtgttcagcggtttacagtgaatcaacttggtttgtccatattttgc aaggggatgtcaaatgagtatatcgtgcattcatataacttcttcctattccctgccatatttggccaaatggattctga gttctcctgtaaagcatctagtattcagttcctgtctcattatggctttgactataacaagtttcttaaagatggaatcc cttatatgaatgaaacacaagagaagaaacttcagcatctgttatctggtaattggatggtccaaagttttgataaagac aaagtgaaaaaagtgattgatcaagtaacttgttggatatcctcagcagaagaggaagattctgtggttctgcaggatgt atatggctttcaagtgattgaactacagcttattctaagaaaagcttttccagatatttggactattcctttggaagatg aaaaattgatggtgaaaaagatgaatccacaataccgctgggtcctggaaaacactgcttttgatccttgtcaaagagaa caaattcttttttccgcaaggggcttcaccaatatttttcagacacttgtgagagctaagaagccgctggtgggacacaa tatgctgatggatctcctctatctacatgagaaattttacaaaccccttcctgaaaagtatgaagaattcaaagataacc ttcactttctgtttcctgttcttttggatacgaagaacattgccaaagccacgtggaaggaatttcagtttcctcaagtt tcttatcttttggagttgtatgaaatgctgtgcagtgttgtgagtccaacagaccagctttgtccagagatctttcactc agatgattgcctcagatacgctacagataagtgtcctcatgaggccgcctatgatgcattcctctgtggagcagttcttc ttaaaatagctcatttgctcctttgcagaaaaactggtgatcaaacagcagcacccactttttctcagtacattgatgta ttagctgcatatgtgaatcaggtgaacttaattcgaggtggagttcagaaaattaatttttctggcctggatgacctgac aacacgtccccccctcctattagccactgtgaaggggtggcatggggtaactgaagagcagattcatcaagagttgagga ctttctcatcaggatagttctgaaagcatataaggcccatcctaacctacagatttccgtgtatcaccgttggaagcatt ctccacgagtgtctagcttcctacaaatatgtggcattgtggcttcttggtctctgctggctttcttgcttggagggtct tatagttgccgtgtgtaacagctcatccactagaaatgcttggtttctttttctctcaatgtaagctgtacaataataga ttaaaacactttgcaatgatcccaaag |
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Protein
| Protein ID | habu1_s1235_g04301.t1 |
|---|---|
| Definition | - |
>habu1_s1235_g04301.t1 MDVGAAQFPGMLPRLEELILGCDFVGLDMEFTGLSIFCKGMSNEYIVHSYNFFLFPAIFGQMDSEFSCKASSIQFLSHYG FDYNKFLKDGIPYMNETQEKKLQHLLSGNWMVQSFDKDKVKKVIDQVTCWISSAEEEDSVVLQDVYGFQVIELQLILRKA FPDIWTIPLEDEKLMVKKMNPQYRWVLENTAFDPCQREQILFSARGFTNIFQTLVRAKKPLVGHNMLMDLLYLHEKFYKP LPEKYEEFKDNLHFLFPVLLDTKNIAKATWKEFQFPQVSYLLELYEMLCSVVSPTDQLCPEIFHSDDCLRYATDKCPHEA AYDAFLCGAVLLKIAHLLLCRKTGDQTAAPTFSQYIDVLAAYVNQVNLIRGGVQKINFSGLDDLTTRPPLLLATVKGWHG VTEEQIHQELRTFCRFDVCRLRVNQFLLLANNFKDIRIVLKAYKAHPNLQISVYHRWKHSPRVSSFLQICGIVASWSLLA FLLGGSYSCRV |
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| Protein ID | habu1_s1235_g04301.t2 |
| Definition | - |
>habu1_s1235_g04301.t2 MDVGAAQFPGMLPRLEELILGCDFVGLDMEFTGLYSDRQPSRFDLPAEWYRKARQSVQRFTVNQLGLSIFCKGMSNEYIV HSYNFFLFPAIFGQMDSEFSCKASSIQFLSHYGFDYNKFLKDGIPYMNETQEKKLQHLLSGNWMVQSFDKDKVKKVIDQV TCWISSAEEEDSVVLQDVYGFQVIELQLILRKAFPDIWTIPLEDEKLMVKKMNPQYRWVLENTAFDPCQREQILFSARGF TNIFQTLVRAKKPLVGHNMLMDLLYLHEKFYKPLPEKYEEFKDNLHFLFPVLLDTKNIAKATWKEFQFPQVSYLLELYEM LCSVVSPTDQLCPEIFHSDDCLRYATDKCPHEAAYDAFLCGAVLLKIAHLLLCRKTGDQTAAPTFSQYIDVLAAYVNQVN LIRGGVQKINFSGLDDLTTRPPLLLATVKGWHGVTEEQIHQELRTFCRFDVCRLRVNQFLLLANNFKDIRIVLKAYKAHP NLQISVYHRWKHSPRVSSFLQICGIVASWSLLAFLLGGSYSCRV |
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| Protein ID | habu1_s1235_g04301.t3 |
| Definition | - |
>habu1_s1235_g04301.t3 MDVGAAQFPGMLPRLEELILGCDFVGLDMEFTGLYSDRQPSRFDLPAEWYRKARQSVQRFTVNQLGLSIFCKGMSNEYIV HSYNFFLFPAIFGQMDSEFSCKASSIQFLSHYGFDYNKFLKDGIPYMNETQEKKLQHLLSGNWMVQSFDKDKVKKVIDQV TCWISSAEEEDSVVLQDVYGFQVIELQLILRKAFPDIWTIPLEDEKLMVKKMNPQYRWVLENTAFDPCQREQILFSARGF TNIFQTLVRAKKPLVGHNMLMDLLYLHEKFYKPLPEKYEEFKDNLHFLFPVLLDTKNIAKATWKEFQFPQVSYLLELYEM LCSVVSPTDQLCPEIFHSDDCLRYATDKCPHEAAYDAFLCGAVLLKIAHLLLCRKTGDQTAAPTFSQYIDVLAAYVNQVN LIRGGVQKINFSGLDDLTTRPPLLLATVKGWHGVTEEQIHQELRTFSSG |
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