Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s1235_g04304
Locus habu1_scaffold1235 : 462930 ... 478385 : -
To GenomeBrowser habu1_scaffold1235:462930..478385
Genes list of scaffold habu1_scaffold1235

Annotation by Blast2GO
Annotation GO
acetyl- cytosolic EC:2.3.1.9 GO:0003985 GO:0005730 GO:0005737 GO:0006090 GO:0006550 GO:0006552 GO:0006554 GO:0006568 GO:0006574 GO:0006633 GO:0018874 GO:0042967 GO:0046950 GO:0070062

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s1235_g04304.t1 1 1 Thiolase_N 7 267 0.0 340.0 0.0 0.0 339.5
habu1_s1235_g04304.t1 1 1 Thiolase_C 274 396 0.0 169.0 0.0 0.0 167.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s1235_g04304.t1 gi|602668276|ref|XP_007439688.1| PREDICTED: acetyl-CoA acetyltransferase, cytosolic isoform X2 [Python bivittatus] 0.0
habu1_s1235_g04304.t1 gi|602668274|ref|XP_007439687.1| PREDICTED: acetyl-CoA acetyltransferase, cytosolic isoform X1 [Python bivittatus] 0.0
habu1_s1235_g04304.t1 gi|530637901|ref|XP_005305769.1| PREDICTED: acetyl-CoA acetyltransferase, cytosolic [Chrysemys picta bellii] 0.0
habu1_s1235_g04304.t1 gi|558125208|ref|XP_006115072.1| PREDICTED: acetyl-CoA acetyltransferase, cytosolic [Pelodiscus sinensis] 0.0
habu1_s1235_g04304.t1 gi|327262048|ref|XP_003215838.1| PREDICTED: acetyl-CoA acetyltransferase, cytosolic [Anolis carolinensis] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 11.8
Venom grand-1 3.5
Pit, infrared sensing 7.8
Nose 9.5
Brain-1 8.5
Eye 16.3
fetal fibroblast 42.0
venom gland-2 5.4
Brain-2 12.3
Spleen 3.2
Lung 2.2
Liver 9.6
Kidney 5.0
Pancreas 2.5
Small intestine 3.0
Large intestine 2.7
Stomach 2.6
heart 2.9
ovary 51.3
cheek muscle 2.2

Transcript
Transcript IDhabu1_s1235_g04304.t1
Definition-
>habu1_s1235_g04304.t1
aaaggaggtgggcggggcccggggtaaccaatgaggactaggatgcgcatcgctgcctgactctaagggaggcgctgggc
actttgcccagagaaagagtgcggctgcaggagcgacggggcttctagtacctttgaggcatcatggattgcgaggacga
ggccgttgttttcgttgctgctgcaaggaccccggtcggatccttcaatggtgccttgtcaaccctgcatgcccatgaat
tggcttcagtagtcattaaagaattgttgcagaggacaaaaattgatcctaaagaattatctgaagttatacttggacaa
gtattgcctgcaggggctggccagaatcctgctcgacaagccagtgtcggggcagggattccatatgagatcccagcttg
gagttgtcaaatgatctgcggatcaggcctgaaagccgtatgtctcggggctcagtctattatgacaggagattccagta
ttgtggtggctggtggaatggaaaacatgagcaaggctcctcatgtcattcatctgcgtggtggagtgaagatgggggaa
gcctctttgcaagacagtattatcgtagatggcttgacagatgttttctactgttatcacatgggtattacagctgaaaa
tgtggccaaacgatggaaggtcagtcgagaagaacaagaccagcaggctgtaatgtctcagaataaggctgaaaatgccc
agaagggtggatattttaataaagagattgtacctgttgctgtaccttctagaaaaggtcccacggaagttaaagcagat
gaacatcctcgccatgggtgcaacgtagaaacagtggcaaagttgaaaccttgcttcataactgatgggacaggaactgt
gactgcagcaaatgcctcaggtataaacgatggtgctgctgctgtaattcttatgaaaaaatcagaagcggttaaacgaa
atctcactcctttggcatggatcgtgtcttcggctcaagttggtgttgatccttcagttatgggaatagcacccatcacg
gccataagaaaagctgttgaaaaagctggttggacattggatgaagtggatctgtatgaaattaatgaagcttttgctgc
cgtaggtgtcgcaataacaaaagaactaaaattgaaaccagaaaagattaacattgaaggtggggctgttgctcttggtc
accctcttggagcatctgggtgtcgaatccttgttacacttctgcactcactagaacgaacaggtggaaaacgaggagtt
gcggctttatgtataggaggaggaatgggcatagctatgtgtgtagaaagataaaggaaacttttctttgattttgtact
aatttgtaacatgactcatctttattagtaagtaataaagaaacaatattaggcaatactg

Protein
Protein IDhabu1_s1235_g04304.t1
Definition-
>habu1_s1235_g04304.t1
MDCEDEAVVFVAAARTPVGSFNGALSTLHAHELASVVIKELLQRTKIDPKELSEVILGQVLPAGAGQNPARQASVGAGIP
YEIPAWSCQMICGSGLKAVCLGAQSIMTGDSSIVVAGGMENMSKAPHVIHLRGGVKMGEASLQDSIIVDGLTDVFYCYHM
GITAENVAKRWKVSREEQDQQAVMSQNKAENAQKGGYFNKEIVPVAVPSRKGPTEVKADEHPRHGCNVETVAKLKPCFIT
DGTGTVTAANASGINDGAAAVILMKKSEAVKRNLTPLAWIVSSAQVGVDPSVMGIAPITAIRKAVEKAGWTLDEVDLYEI
NEAFAAVGVAITKELKLKPEKINIEGGAVALGHPLGASGCRILVTLLHSLERTGGKRGVAALCIGGGMGIAMCVER

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