Gene
| Gene Model ID | habu1_s1250_g04350 |
|---|---|
| Locus | habu1_scaffold1250 : 355183 ... 430555 : - |
| To GenomeBrowser | habu1_scaffold1250:355183..430555 |
| Genes list of scaffold | habu1_scaffold1250 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ferm domain-containing protein 3 | GO:0005737 GO:0005856 GO:0008092 GO:0019898 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1250_g04350.t3 | 1 | 1 | FERM_N | 22 | 99 | 2.4e-21 | 75.5 | 1.4e-24 | 5.3e-21 | 74.4 |
| habu1_s1250_g04350.t3 | 1 | 1 | FERM_M | 102 | 238 | 2.1e-12 | 47.2 | 9.0e-15 | 3.3e-11 | 43.4 |
| habu1_s1250_g04350.t3 | 1 | 1 | FERM_C | 243 | 328 | 3.5e-18 | 65.6 | 2.3e-21 | 8.5e-18 | 64.3 |
| habu1_s1250_g04350.t3 | 1 | 1 | FA | 336 | 380 | 4.1e-16 | 58.5 | 2.4e-19 | 9.1e-16 | 57.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1250_g04350.t3 | gi|675637318|ref|XP_008992836.1| | PREDICTED: FERM domain-containing protein 3 isoform X1 [Callithrix jacchus] | 0.0 |
| habu1_s1250_g04350.t3 | gi|297271149|ref|XP_002800197.1| | PREDICTED: FERM domain-containing protein 3-like isoform 2 [Macaca mulatta] | 0.0 |
| habu1_s1250_g04350.t3 | gi|641703101|ref|XP_008140260.1| | PREDICTED: FERM domain-containing protein 3 isoform X1 [Eptesicus fuscus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.2 |
| Venom grand-1 | 0.4 |
| Pit, infrared sensing | 0.9 |
| Nose | 4.1 |
| Brain-1 | 4.9 |
| Eye | 1.4 |
| fetal fibroblast | 1.0 |
| venom gland-2 | 0.2 |
| Brain-2 | 3.8 |
| Spleen | 0.3 |
| Lung | 0.1 |
| Liver | 0.8 |
| Kidney | 4.5 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.2 |
| Stomach | 0.1 |
| heart | 1.9 |
| ovary | 0.1 |
| cheek muscle | 6.9 |
Transcript
| Transcript ID | habu1_s1250_g04350.t1 |
|---|---|
| Definition | - |
>habu1_s1250_g04350.t1 gttcgctccctgcgagtgcgtgaggcgagggggcagaaggaccatgaaaatgatccggttccggagctcgagcatcaggt cgctgagccaggatatgaaatgcacgatccgtctgttggacgactcggagatctcctgccacatccagagagagaccaaa ggccagtttctcatagatcatgtttgcaatcactactgtttgctagaaaaagactattttggcattcgttatgtggattc tgaaaaacagcggcattggcttgagcccaataaatctatcttcaggcaaatgaaatctcatccaccatataccatgtgct ttagagtgaaattctacccgcatgaacccctgaagattaaggaagagctcaccaggtaccttttatacctccaaatcaaa agagatattttccatggccgtttgctgtgtgggttttctgatgctgcttacctgggagcgtgcattattcaagctgaact aggtgattctgattctgatgaacatgtggataattacgtcagtgaatttaagatcttccctaaacaatctcaaaagctgg aaagaaaaattggtgaaatacataaaaatgaattcagggggcagagtccagctgttgctgaatttaatttattattaaga gcacattcattagaaacctatggtgttgatcctcatccttgcaaggattcaactgggaccacaacatttttaggattcac agccacaggttttgtggttttccagggaaataaaaggatacatttgctaaaatggtatgatgtctgtaaactgaagtttg aagggaagacattttatgtgattgcaattcagaaggagaaaaaggctatgttatcattccatacttctacaccagcagct tgcaagcatctctggaaatgtggtgtggagaatcaggctttttacaagtatgcaaaatcaagccaaatcaaaaccatgtc cagcagcaaaatattttttaaaggcagcagatttagatacagtggaaaagttgcaaaagaggttgttgaagcaagttcaa agatccagagggagcctccagaagtacacagaaccaacattactcaaagtcgtagctcttattctttaagcaaacaactc ataattaacatggaacctctgcaacctctccatccatcaccagatgaccaggaagaggttctttctgatgaaggggaaga tcctgctatcagtccccacctggtacagcaagatcccatgcctgcactccttcctggaagccttacaacttggaaatctg gatctttctccattccacgtgatactccttcccgtatccgtgcccccagatctcttgagaatagcgtgatgggaatccag ctgccgaaagaagatgatatttctctccctgtgatatcaagctctcctactaaagaaacagatgatggttcagatctttc agttgaggagggtgagaaaatcaaagaggagcctttaacaatttcagaattgatctacaatccaagcaccagcttgctcc ccactcctgttaacgatgaggagatagaccttctctttcaaacttctccaagggcagaaaatgggaaagaagataccgat tcatttgaggaactggaggcggatgaaaatgcatttttggttgcagaggaggaagagttgaaggaagcccgaaaagcact taggtggagttatgactttttgatgggtaacttgaaggtaaatgctgctgtgaagagtttttccagacttctttttgttg ggcttggggtattgcttgtggttttcccgctactacttgtccttctggaatcagaccttgacatctccttcctccatgaa atccgccagacaccagagtttcaacagtttcacattgaatattactgtcctctcagacagtggatagcctgcaaagtaga cttcattagccatttgtttggcagctcttaaacataaaaaaacatgtgcaaaactaagggctatattcaaaactagtgaa ttttagtcagtagttaggtgctcataaacatcctgcaggttatcttcaattagttctttattttgatagacaataacttc aaaattcttacatttacttttcataattgaataattgatgtagtagtggcctttaagtcaccaaaaagcagtctttgttt ttatttgctttcctgtttttatcagtaattaagctgaagagaaagctatcatttctaccatatcaagccatgatatccta attttaagcatttactacaaatagaagaggatgcttttgaatatattccttagtaaaacaatatctactaaccaatgcct atataagtacgcaccgattgctcgggttttattatttttttgtttgtttgatttttttcatttaaaaatatttttatgtc tttacaaattttggtaaatttttagcaaatgcaatttctgaaaatatttaagtgtacagatgaataaatgcacaaggaca taacatgaat |
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| Transcript ID | habu1_s1250_g04350.t2 |
| Definition | - |
>habu1_s1250_g04350.t2 gttcgctccctgcgagtgcgtgaggcgagggggcagaaggaccatgaaaatgatccggttccggagctcgagcatcaggt cgctgagccaggatatgaaatgcacgatccgtctgttggacgactcggagatctcctgccacatccagagagagaccaaa ggccagtttctcatagatcatgtttgcaatcactactgtttgctagaaaaagactattttggcattcgttatgtggattc tgaaaaacagcggcattggcttgagcccaataaatctatcttcaggcaaatgaaatctcatccaccatataccatgtgct ttagagtgaaattctacccgcatgaacccctgaagattaaggaagagctcaccaggtaccttttatacctccaaatcaaa agagatattttccatggccgtttgctgtgtgggttttctgatgctgcttacctgggagcgtgcattattcaagctgaact aggtgattctgattctgatgaacatgtggataattacgtcagtgaatttaagatcttccctaaacaatctcaaaagctgg aaagaaaaattggtgaaatacataaaaatgaattcagggggcagagtccagctgttgctgaatttaatttattattaaga gcacattcattagaaacctatggtgttgatcctcatccttgcaaggattcaactgggaccacaacatttttaggattcac agccacaggttttgtggttttccagggaaataaaaggatacatttgctaaaatggtatgatgtctgtaaactgaagtttg aagggaagacattttatgtgattgcaattcagaaggagaaaaaggctatgttatcattccatacttctacaccagcagct tgcaagcatctctggaaatgtggtgtggagaatcaggctttttacaagtatgcaaaatcaagccaaatcaaaaccatgtc cagcagcaaaatattttttaaaggcagcagatttagatacagtggaaaagttgcaaaagaggttgttgaagcaagttcaa agatccagagggagcctccagaagtacacagaaccaacattactcaaagtcgtagctcttattctttaagcaaacaactc ataattaacatggaacctctgcaacctctccatccatcaccagatgaccaggaagaggttctttctgatgaaggggaaga tcctgctatcagtccccacctggtacagcaagatcccatgcctgcactccttcctggaagccttacaacttggaaatctg gatctttctccattccacgtgatactccttcccgtatccgtgcccccagatctcttggaatccagctgccgaaagaagat gatatttctctccctgtgatatcaagctctcctactaaagaaacagatgatggttcagatctttcagttgaggagggtga gaaaatcaaagaggagcctttaacaatttcagaattgatctacaatccaagcaccagcttgctccccactcctgttaacg atgaggagatagaccttctctttcaaacttctccaagggcagaaaatgggaaagaagataccgattcatttgaggaactg gaggcggatgaaaatgcatttttggttgcagaggaggaagagttgaaggaagcccgaaaagcacttaggtggagttatga ctttttgatgggtaacttgaaggtaaatgctgctgtgaagagtttttccagacttctttttgttgggcttggggtattgc ttgtggttttcccgctactacttgtccttctggaatcagaccttgacatctccttcctccatgaaatccgccagacacca gagtttcaacagtttcacattgaatattactgtcctctcagacagtggatagcctgcaaagtagacttcattagccattt gtttggcagctcttaaacataaaaaaacatgtgcaaaactaagggctatattcaaaactagtgaattttagtcagtagtt aggtgctcataaacatcctgcaggttatcttcaattagttctttattttgatagacaataacttcaaaattcttacattt acttttcataattgaataattgatgtagtagtggcctttaagtcaccaaaaagcagtctttgtttttatttgctttcctg tttttatcagtaattaagctgaagagaaagctatcatttctaccatatcaagccatgatatcctaattttaagcatttac tacaaatagaagaggatgcttttgaatatattccttagtaaaacaatatctactaaccaatgcctatataagtacgcacc gattgctcgggttttattatttttttgtttgtttgatttttttcatttaaaaatatttttatgtctttacaaattttggt aaatttttagcaaatgcaatttctgaaaatatttaagtgtacagatgaataaatgcacaaggacataacatgaat |
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| Transcript ID | habu1_s1250_g04350.t3 |
| Definition | - |
>habu1_s1250_g04350.t3 gttcgctccctgcgagtgcgtgaggcgagggggcagaaggaccatgaaaatgatccggttccggagctcgagcatcaggt cgctgagccaggatatgaaatgcacgatccgtctgttggacgactcggagatctcctgccacatccagagagagaccaaa ggccagtttctcatagatcatgtttgcaatcactactgtttgctagaaaaagactattttggcattcgttatgtggattc tgaaaaacagcggcattggcttgagcccaataaatctatcttcaggcaaatgaaatctcatccaccatataccatgtgct ttagagtgaaattctacccgcatgaacccctgaagattaaggaagagctcaccaggtaccttttatacctccaaatcaaa agagatattttccatggccgtttgctgtgtgggttttctgatgctgcttacctgggagcgtgcattattcaagctgaact aggtgattctgattctgatgaacatgtggataattacgtcagtgaatttaagatcttccctaaacaatctcaaaagctgg aaagaaaaattggtgaaatacataaaaatgaattcagggctgttcagttgaatatcttttgttctgagctatatccaggg ataacaccagaaaatgagaagcacggttcctacactgaaatggggcagagtccagctgttgctgaatttaatttattatt aagagcacattcattagaaacctatggtgttgatcctcatccttgcaaggattcaactgggaccacaacatttttaggat tcacagccacaggttttgtggttttccagggaaataaaaggatacatttgctaaaatggtatgatgtctgtaaactgaag tttgaagggaagacattttatgtgattgcaattcagaaggagaaaaaggctatgttatcattccatacttctacaccagc agcttgcaagcatctctggaaatgtggtgtggagaatcaggctttttacaagtatgcaaaatcaagccaaatcaaaacca tgtccagcagcaaaatattttttaaaggcagcagatttagatacagtggaaaagttgcaaaagaggttgttgaagcaagt tcaaagatccagagggagcctccagaagtacacagaaccaacattactcaaagtcgtagctcttattctttaagcaaaca actcataattaacatggaacctctgcaacctctccatccatcaccagatgaccaggaagaggttctttctgatgaagggg aagatcctgctatcagtccccacctggtacagcaagatcccatgcctgcactccttcctggaagccttacaacttggaaa tctggatctttctccattccacgtgatactccttcccgtatccgtgcccccagatctcttggaatccagctgccgaaaga agatgatatttctctccctgtgatatcaagctctcctactaaagaaacagatgatggttcagatctttcagttgaggagg gtgagaaaatcaaagaggagcctttaacaatttcagaattgatctacaatccaagcaccagcttgctccccactcctgtt aacgatgaggagatagaccttctctttcaaacttctccaagggcagaaaatgggaaagaagataccgattcatttgagga actggaggcggatgaaaatgcatttttggttgcagaggaggaagagttgaaggaagcccgaaaagcacttaggtggagtt atgactttttgatgggtaacttgaaggtaaatgctgctgtgaagagtttttccagacttctttttgttgggcttggggta ttgcttgtggttttcccgctactacttgtccttctggaatcagaccttgacatctccttcctccatgaaatccgccagac accagagtttcaacagtttcacattgaatattactgtcctctcagacagtggatagcctgcaaagtagacttcattagcc atttgtttggcagctcttaaacataaaaaaacatgtgcaaaactaagggctatattcaaaactagtgaattttagtcagt agttaggtgctcataaacatcctgcaggttatcttcaattagttctttattttgatagacaataacttcaaaattcttac atttacttttcataattgaataattgatgtagtagtggcctttaagtcaccaaaaagcagtctttgtttttatttgcttt cctgtttttatcagtaattaagctgaagagaaagctatcatttctaccatatcaagccatgatatcctaattttaagcat ttactacaaatagaagaggatgcttttgaatatattccttagtaaaacaatatctactaaccaatgcctatataagtacg caccgattgctcgggttttattatttttttgtttgtttgatttttttcatttaaaaatatttttatgtctttacaaattt tggtaaatttttagcaaatgcaatttctgaaaatatttaagtgtacagatgaataaatgcacaaggacataacatgaat |
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Protein
| Protein ID | habu1_s1250_g04350.t1 |
|---|---|
| Definition | - |
>habu1_s1250_g04350.t1 MKMIRFRSSSIRSLSQDMKCTIRLLDDSEISCHIQRETKGQFLIDHVCNHYCLLEKDYFGIRYVDSEKQRHWLEPNKSIF RQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCGFSDAAYLGACIIQAELGDSDSDEHVDNYVS EFKIFPKQSQKLERKIGEIHKNEFRGQSPAVAEFNLLLRAHSLETYGVDPHPCKDSTGTTTFLGFTATGFVVFQGNKRIH LLKWYDVCKLKFEGKTFYVIAIQKEKKAMLSFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTMSSSKIFFKGSRFRYS GKVAKEVVEASSKIQREPPEVHRTNITQSRSSYSLSKQLIINMEPLQPLHPSPDDQEEVLSDEGEDPAISPHLVQQDPMP ALLPGSLTTWKSGSFSIPRDTPSRIRAPRSLENSVMGIQLPKEDDISLPVISSSPTKETDDGSDLSVEEGEKIKEEPLTI SELIYNPSTSLLPTPVNDEEIDLLFQTSPRAENGKEDTDSFEELEADENAFLVAEEEELKEARKALRWSYDFLMGNLKVN AAVKSFSRLLFVGLGVLLVVFPLLLVLLESDLDISFLHEIRQTPEFQQFHIEYYCPLRQWIACKVDFISHLFGSS |
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| Protein ID | habu1_s1250_g04350.t2 |
| Definition | - |
>habu1_s1250_g04350.t2 MKMIRFRSSSIRSLSQDMKCTIRLLDDSEISCHIQRETKGQFLIDHVCNHYCLLEKDYFGIRYVDSEKQRHWLEPNKSIF RQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCGFSDAAYLGACIIQAELGDSDSDEHVDNYVS EFKIFPKQSQKLERKIGEIHKNEFRGQSPAVAEFNLLLRAHSLETYGVDPHPCKDSTGTTTFLGFTATGFVVFQGNKRIH LLKWYDVCKLKFEGKTFYVIAIQKEKKAMLSFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTMSSSKIFFKGSRFRYS GKVAKEVVEASSKIQREPPEVHRTNITQSRSSYSLSKQLIINMEPLQPLHPSPDDQEEVLSDEGEDPAISPHLVQQDPMP ALLPGSLTTWKSGSFSIPRDTPSRIRAPRSLGIQLPKEDDISLPVISSSPTKETDDGSDLSVEEGEKIKEEPLTISELIY NPSTSLLPTPVNDEEIDLLFQTSPRAENGKEDTDSFEELEADENAFLVAEEEELKEARKALRWSYDFLMGNLKVNAAVKS FSRLLFVGLGVLLVVFPLLLVLLESDLDISFLHEIRQTPEFQQFHIEYYCPLRQWIACKVDFISHLFGSS |
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| Protein ID | habu1_s1250_g04350.t3 |
| Definition | - |
>habu1_s1250_g04350.t3 MKMIRFRSSSIRSLSQDMKCTIRLLDDSEISCHIQRETKGQFLIDHVCNHYCLLEKDYFGIRYVDSEKQRHWLEPNKSIF RQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCGFSDAAYLGACIIQAELGDSDSDEHVDNYVS EFKIFPKQSQKLERKIGEIHKNEFRAVQLNIFCSELYPGITPENEKHGSYTEMGQSPAVAEFNLLLRAHSLETYGVDPHP CKDSTGTTTFLGFTATGFVVFQGNKRIHLLKWYDVCKLKFEGKTFYVIAIQKEKKAMLSFHTSTPAACKHLWKCGVENQA FYKYAKSSQIKTMSSSKIFFKGSRFRYSGKVAKEVVEASSKIQREPPEVHRTNITQSRSSYSLSKQLIINMEPLQPLHPS PDDQEEVLSDEGEDPAISPHLVQQDPMPALLPGSLTTWKSGSFSIPRDTPSRIRAPRSLGIQLPKEDDISLPVISSSPTK ETDDGSDLSVEEGEKIKEEPLTISELIYNPSTSLLPTPVNDEEIDLLFQTSPRAENGKEDTDSFEELEADENAFLVAEEE ELKEARKALRWSYDFLMGNLKVNAAVKSFSRLLFVGLGVLLVVFPLLLVLLESDLDISFLHEIRQTPEFQQFHIEYYCPL RQWIACKVDFISHLFGSS |
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