Gene
| Gene Model ID | habu1_s1250_g04357 |
|---|---|
| Locus | habu1_scaffold1250 : 573275 ... 575708 : + |
| To GenomeBrowser | habu1_scaffold1250:573275..575708 |
| Genes list of scaffold | habu1_scaffold1250 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| recq-mediated genome instability protein 1 | GO:0044707 GO:0050896 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1250_g04357.t1 | 1 | 1 | DUF1767 | 12 | 104 | 3.7e-26 | 91.2 | 1.4e-29 | 1.0e-25 | 89.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1250_g04357.t1 | gi|591382112|ref|XP_007065587.1| | PREDICTED: recQ-mediated genome instability protein 1 [Chelonia mydas] | 0.0 |
| habu1_s1250_g04357.t1 | gi|558221280|ref|XP_006135935.1| | PREDICTED: recQ-mediated genome instability protein 1 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s1250_g04357.t1 | gi|694624682|ref|XP_009478716.1| | PREDICTED: recQ-mediated genome instability protein 1 [Pelecanus crispus] | 0.0 |
| habu1_s1250_g04357.t1 | gi|602651357|ref|XP_007432063.1| | PREDICTED: recQ-mediated genome instability protein 1 [Python bivittatus] | 0.0 |
| habu1_s1250_g04357.t1 | gi|327263521|ref|XP_003216568.1| | PREDICTED: recQ-mediated genome instability protein 1 [Anolis carolinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.7 |
| Venom grand-1 | 1.7 |
| Pit, infrared sensing | 2.4 |
| Nose | 3.0 |
| Brain-1 | 1.0 |
| Eye | 2.1 |
| fetal fibroblast | 9.1 |
| venom gland-2 | 1.4 |
| Brain-2 | 0.7 |
| Spleen | 0.6 |
| Lung | 0.6 |
| Liver | 0.6 |
| Kidney | 1.2 |
| Pancreas | 0.7 |
| Small intestine | 0.8 |
| Large intestine | 1.0 |
| Stomach | 1.8 |
| heart | 0.6 |
| ovary | 39.1 |
| cheek muscle | 0.8 |
Transcript
| Transcript ID | habu1_s1250_g04357.t1 |
|---|---|
| Definition | - |
>habu1_s1250_g04357.t1 gggccttagggttatatgggcgcgttcttcttgcagaagtgaagaaaatgaccacatcaggtgttgcattaagagtggaa acttggctcttatctacctggcatgtgaaagtgccaacacgatggctagaagcttgtattgattggattgaaaaagaaca tcatggaagcaatttggctcaggctgctactaacaagcaagtttttgagcagtggcttcttacagatctccgagatcttg aataccctgttctgcctgaattcattttaaatgatccaaaaggagaactgaatggctttcattctgtgcaaattgattca gttgttgatgtgagtcagcccgcttattcccagttgcaaaaaataagacgaaaaaacactgtaaatgaggaaataactgc taacacacagaggaccttgaggtcatgggaggaaaatcctactcgaatgcttgtgctacaaatgactgatggcatacatc atatccaaggtatggaatatcaacctattcctcaactgcatagtggtctgcctccaggaaccaaagttatgatacaaggg aaggttgcatttcgtttaggtgttcttttgcttaaaccagaaaatgtgaaattattgggaggtgaggttgatagccttct aaagacatttgctttggagagagtgcttgctgggttaattggagaagaagactgcagtcctaacatagtcaggtctgata ttggcgaaagtgaaattgcaaggcctaatgatgaattagggctttctgatgaagagcttctggcaagtcttgaagaaaat ggtgaattaaggatacgtgaagatcctcctgaaagtggatactgtacaagaagtaccagtttaaattctactgtgtcttc tcttcctcagagctttgggaacagcttacaacaaagatctgcagagttaatttcaagaaatgaagaacaacaaactgttt cagttctagaaaatatggaaggtgattttgatggattttcaatggatgatgatttacttttagtagaagagatccagcag gaacagatacatgttctgaacactaatattagtataaataatcaagctgttcaagaaaaaaaatctagtgaaagaggaag gtataatacatttgaagaaagcatggcagactttactataaatcataaaaaacaatatacccagaatttagatgacagta agaaatcctctaaaatctctaacgatggagtaatagatgtcaatgcagaattcagattgtgttctgagcaggtacagatg ataaaaataaataagtgtcacaaagttgatttggatacccctccttttacgtatctatctattctgttaagtagcaagtg cagagataatactactgtgaaaattaaagcatttatagtaacccttacaggaaagcttacatgcagtaatggcttctgga gtgtaacagcaaaaatatctgatggcacagcttatctagaagttgaattcgctgatgagattcttacaagcttaattggc ttttctgtgcctgaaatgaagcaactgaggaaagatcctatcctgtacccaaagcttaaggagggattacagaattgcca acgagatctaatagacctctgttgcttgatgactattgaatttaatgtttgccagacaaaaggaacagtaatagttttgc aagatattaatataagtaatttgaatcacttaaaaagacggttatatatttaacatttagccagcaggttataattttaa gaaaaacttgtatcatagactaggtgttgattatggtattactatttgaattcagactcggagaaatattttaatattag cacatattttctttaattcactcaacatatgtatttgttttagcaatggttgatgtgttttcaatatttcctcagaataa tattttttaaacatgggaaaaataaatttaagaacttacttctagagt |
|
Protein
| Protein ID | habu1_s1250_g04357.t1 |
|---|---|
| Definition | - |
>habu1_s1250_g04357.t1 MTTSGVALRVETWLLSTWHVKVPTRWLEACIDWIEKEHHGSNLAQAATNKQVFEQWLLTDLRDLEYPVLPEFILNDPKGE LNGFHSVQIDSVVDVSQPAYSQLQKIRRKNTVNEEITANTQRTLRSWEENPTRMLVLQMTDGIHHIQGMEYQPIPQLHSG LPPGTKVMIQGKVAFRLGVLLLKPENVKLLGGEVDSLLKTFALERVLAGLIGEEDCSPNIVRSDIGESEIARPNDELGLS DEELLASLEENGELRIREDPPESGYCTRSTSLNSTVSSLPQSFGNSLQQRSAELISRNEEQQTVSVLENMEGDFDGFSMD DDLLLVEEIQQEQIHVLNTNISINNQAVQEKKSSERGRYNTFEESMADFTINHKKQYTQNLDDSKKSSKISNDGVIDVNA EFRLCSEQVQMIKINKCHKVDLDTPPFTYLSILLSSKCRDNTTVKIKAFIVTLTGKLTCSNGFWSVTAKISDGTAYLEVE FADEILTSLIGFSVPEMKQLRKDPILYPKLKEGLQNCQRDLIDLCCLMTIEFNVCQTKGTVIVLQDINISNLNHLKRRLY I |
|