Gene
| Gene Model ID | habu1_s12716_g20859 |
|---|---|
| Locus | habu1_scaffold12716 : 239046 ... 251301 : + |
| To GenomeBrowser | habu1_scaffold12716:239046..251301 |
| Genes list of scaffold | habu1_scaffold12716 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s12716_g20859.t1 | 1 | 1 | PTRF_SDPR | 31 | 143 | 0.0 | 195.6 | 0.0 | 0.0 | 195.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s12716_g20859.t1 | gi|564243718|ref|XP_006278634.1| | PREDICTED: polymerase I and transcript release factor-like isoform X1 [Alligator mississippiensis] | 0.0 |
| habu1_s12716_g20859.t1 | gi|695146934|ref|XP_009500932.1| | PREDICTED: polymerase I and transcript release factor-like [Phalacrocorax carbo] | 0.0 |
| habu1_s12716_g20859.t1 | gi|697020729|ref|XP_009571880.1| | PREDICTED: polymerase I and transcript release factor-like [Fulmarus glacialis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.5 |
| Venom grand-1 | 2.2 |
| Pit, infrared sensing | 4.7 |
| Nose | 2.1 |
| Brain-1 | 0.7 |
| Eye | 7.0 |
| fetal fibroblast | 11.5 |
| venom gland-2 | 0.7 |
| Brain-2 | 1.0 |
| Spleen | 2.2 |
| Lung | 11.4 |
| Liver | 1.6 |
| Kidney | 3.8 |
| Pancreas | 1.4 |
| Small intestine | 3.5 |
| Large intestine | 9.0 |
| Stomach | 7.8 |
| heart | 25.1 |
| ovary | 0.3 |
| cheek muscle | 24.8 |
Transcript
| Transcript ID | habu1_s12716_g20859.t1 |
|---|---|
| Definition | - |
>habu1_s12716_g20859.t1 taagtatcttaagtttcttaagatagtttggtgatataaaataaacagcaaacaaggcaagaggaagggaaagagcaaga aaacattggttggataaacttgatgagattctgaaaaagataaagtgtcaagcttctccagattttcctagtcagaactc ttaagtgaccatggcagacaccaccctccatatcgtcgagcagccaactgtatctgaggcttcagaggagccagctgctg aggaacccattaaatctgaccagatcaatggtgttatggtgcttacccttttggacaagattattggggctgtggatcag attcagctgacccagactcaattggaagagagacagcaagaaatggatggtgtagtggccagcatccagggagaactggc taagctcaccaaagcccacaccactaccagcaatacagtcaataagatgttggagaaagtccgtaaagtcagtgttaatg tgaaaactgtccgacaaaatctggaaaaacaagctggacaaatcaagaagttagaatccaatgagacggaattgctgaag cgtaggaattttaaagtcatgatctaccagcccgagatgatccatggtgcgcccagtgaaactccaccggagagcgtgcc ccttgacctttcagaagacagcgaaccttatgacctttctggagagattttgccttctggccctttagcagaaacagtgc catggcaccaggtggcacagaatgaaaatggaggcagcagctttgagtcagagaagcccaagccatctgcggatcaaact gagccctttcttctcagcctctgaaacttctgcccctacattttagctgctggctgcctcactgaagtctgtagccctgc ctttttgcttgtaaagcagttttgggtcagttcagtggctttagcttttgttgcccttgttgctatgtttgctaatagct ctaaaggagggaggagaaaagtatagcagtccacttttaaaaactatgatcttgtgctcatttagtcacagtacaatttt ccccaatcttattttctctggatattttggatccaactaagcagggccaaggaccctggcaacaaatttagcatgtctca aagggccagcaaattattccttatttaataattcattatggttttactgccccaaaaggaaagaaatgtggataatgttt ttcttccttttatgcccaactaacttggatgactctaagcagcctggcttggctaggagaggactgtcatttactacgta atatgcctcagacaagcaaattggcttgggctgcttatgttttaatacataatatagataatgctacacatactcgtc |
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Protein
| Protein ID | habu1_s12716_g20859.t1 |
|---|---|
| Definition | - |
>habu1_s12716_g20859.t1 MADTTLHIVEQPTVSEASEEPAAEEPIKSDQINGVMVLTLLDKIIGAVDQIQLTQTQLEERQQEMDGVVASIQGELAKLT KAHTTTSNTVNKMLEKVRKVSVNVKTVRQNLEKQAGQIKKLESNETELLKRRNFKVMIYQPEMIHGAPSETPPESVPLDL SEDSEPYDLSGEILPSGPLAETVPWHQVAQNENGGSSFESEKPKPSADQTEPFLLSL |
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