Gene
| Gene Model ID | habu1_s12804_g20886 |
|---|---|
| Locus | habu1_scaffold12804 : 92316 ... 137738 : + |
| To GenomeBrowser | habu1_scaffold12804:92316..137738 |
| Genes list of scaffold | habu1_scaffold12804 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-6b | GO:0000139 GO:0003924 GO:0005525 GO:0006886 GO:0006890 GO:0006891 GO:0006913 GO:0008152 GO:0016023 GO:0016459 GO:0019003 GO:0031489 GO:0032482 GO:0042147 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s12804_g20886.t1 | 1 | 1 | Arf | 12 | 172 | 1.3e-15 | 57.1 | 1.3e-18 | 1.6e-15 | 56.7 |
| habu1_s12804_g20886.t1 | 1 | 1 | Ras | 15 | 173 | 0.0 | 199.5 | 0.0 | 0.0 | 199.2 |
| habu1_s12804_g20886.t1 | 1 | 1 | Miro | 15 | 129 | 1.2e-20 | 74.1 | 1.8e-23 | 2.3e-20 | 73.2 |
| habu1_s12804_g20886.t1 | 1 | 1 | SRPRB | 15 | 154 | 5.6e-06 | 25.6 | 6.5e-09 | 8.1e-06 | 25.1 |
| habu1_s12804_g20886.t1 | 1 | 1 | GTP_EFTU | 36 | 175 | 5.5e-08 | 32.4 | 2.0e-10 | 2.5e-07 | 30.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s12804_g20886.t1 | gi|602655393|ref|XP_007433445.1| | PREDICTED: ras-related protein Rab-6B [Python bivittatus] | 0.0 |
| habu1_s12804_g20886.t1 | gi|327267235|ref|XP_003218408.1| | PREDICTED: ras-related protein Rab-6B isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s12804_g20886.t1 | gi|530633296|ref|XP_005303690.1| | PREDICTED: ras-related protein Rab-6B [Chrysemys picta bellii] | 0.0 |
| habu1_s12804_g20886.t1 | gi|30424655|ref|NP_776142.1| | ras-related protein Rab-6B [Mus musculus] | 0.0 |
| habu1_s12804_g20886.t1 | gi|50927456|gb|AAH78662.1| | RAB6B protein [Homo sapiens] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.3 |
| Venom grand-1 | 5.5 |
| Pit, infrared sensing | 6.4 |
| Nose | 10.8 |
| Brain-1 | 27.6 |
| Eye | 9.5 |
| fetal fibroblast | 2.5 |
| venom gland-2 | 6.5 |
| Brain-2 | 40.2 |
| Spleen | 5.1 |
| Lung | 11.4 |
| Liver | 12.4 |
| Kidney | 3.6 |
| Pancreas | 8.4 |
| Small intestine | 13.9 |
| Large intestine | 20.9 |
| Stomach | 21.3 |
| heart | 15.9 |
| ovary | 6.0 |
| cheek muscle | 2.3 |
Transcript
| Transcript ID | habu1_s12804_g20886.t1 |
|---|---|
| Definition | - |
>habu1_s12804_g20886.t1 gtcgccctgagcaaaggagccagtccgcagacgctgcttctccccgccctgcccctcgctttcctcccggcgcagccctc tgccgagccaggcgcatcatgtccacgggaggcgatttcgggaacccacttagaaaatttaaattggtcttcctagggga gcaaagcgttgggaagacatccctgatcacaagattcatgtatgacagttttgacaacacatatcaggctacaattggaa ttgacttcctatctaaaaccatgtatttggaagatcggacagtacggttgcagctgtgggacacagcaggccaagagaga ttccgaagtttgattcccagttacattcgtgactctacagtagctgtggtggtttatgacatcacaaatctcaattcatt ccaacaaacttccaaatggattgatgatgtcagaacagaaagaggaagtgatgtcatcattatgttagtgggcaacaaaa ctgaccttgcagataaaaggcaaatcaccattgaagaaggggaacagagagctaaggaactgaatgtcatgtttattgaa acaagtgcaaaaacgggatacaatgtaaaacagctcttccgacgtgttgcatcagccctaccagggatggagagcgttca agagaagagtaaagaagggatgatagacattaaattggacaaaccacaggaaccaccggcgagtgaaggaggatgttctt gttaatgcaaaatgcaggatttgtcagcttcatttgacaccacgcttgttgtgttgcttcctattggttagcttcctcaa aatacaaattgagttattggttggggaggatttcttttctctcaatacctctctagggtggggagactcaacacaaatca acagctggctctagccttttcttttttgttttatttagttgtaatataatgtactttattaaaaatgccaaaacaattca gaatt |
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Protein
| Protein ID | habu1_s12804_g20886.t1 |
|---|---|
| Definition | - |
>habu1_s12804_g20886.t1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP SYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELNVMFIETSAKTG YNVKQLFRRVASALPGMESVQEKSKEGMIDIKLDKPQEPPASEGGCSC |
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