Gene
| Gene Model ID | habu1_s12804_g20887 |
|---|---|
| Locus | habu1_scaffold12804 : 144068 ... 153565 : - |
| To GenomeBrowser | habu1_scaffold12804:144068..153565 |
| Genes list of scaffold | habu1_scaffold12804 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| signal recognition particle receptor subunit beta | GO:0005525 GO:0005576 GO:0005622 GO:0006826 GO:0006879 GO:0007264 GO:0008199 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s12804_g20887.t1 | 1 | 1 | Arf | 49 | 194 | 1.5e-17 | 63.3 | 1.6e-20 | 2.0e-17 | 62.9 |
| habu1_s12804_g20887.t1 | 1 | 1 | SRPRB | 57 | 236 | 0.0 | 224.4 | 0.0 | 0.0 | 224.1 |
| habu1_s12804_g20887.t1 | 1 | 1 | FeoB_N | 60 | 205 | 3.2e-06 | 26.4 | 9.7e-09 | 1.2e-05 | 24.6 |
| habu1_s12804_g20887.t1 | 1 | 1 | MMR_HSR1 | 61 | 175 | 1.0e-06 | 28.6 | 1.4e-09 | 1.7e-06 | 27.9 |
| habu1_s12804_g20887.t1 | 1 | 1 | GTP_EFTU | 82 | 248 | 4.6e-09 | 35.9 | 2.8e-11 | 3.4e-08 | 33.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s12804_g20887.t1 | gi|602655391|ref|XP_007433444.1| | PREDICTED: signal recognition particle receptor subunit beta [Python bivittatus] | 0.0 |
| habu1_s12804_g20887.t1 | gi|637277631|ref|XP_008104569.1| | PREDICTED: signal recognition particle receptor subunit beta [Anolis carolinensis] | 0.0 |
| habu1_s12804_g20887.t1 | gi|704286942|ref|XP_010157847.1| | PREDICTED: signal recognition particle receptor subunit beta, partial [Eurypyga helias] | 0.0 |
| habu1_s12804_g20887.t1 | gi|591364261|ref|XP_007057032.1| | PREDICTED: signal recognition particle receptor subunit beta [Chelonia mydas] | 0.0 |
| habu1_s12804_g20887.t1 | gi|557275863|ref|XP_006021102.1| | PREDICTED: signal recognition particle receptor subunit beta [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 9.0 |
| Venom grand-1 | 9.0 |
| Pit, infrared sensing | 8.4 |
| Nose | 9.4 |
| Brain-1 | 14.6 |
| Eye | 12.2 |
| fetal fibroblast | 17.0 |
| venom gland-2 | 18.5 |
| Brain-2 | 13.2 |
| Spleen | 7.4 |
| Lung | 8.5 |
| Liver | 8.2 |
| Kidney | 10.0 |
| Pancreas | 7.2 |
| Small intestine | 5.1 |
| Large intestine | 5.0 |
| Stomach | 6.6 |
| heart | 9.0 |
| ovary | 5.7 |
| cheek muscle | 11.6 |
Transcript
| Transcript ID | habu1_s12804_g20887.t1 |
|---|---|
| Definition | - |
>habu1_s12804_g20887.t1 ctggttttgggtataatgttacaaaattctgatggttttttttttcccctaccagaaattgatgcttcagatttaaaaca accttcgtcacgtgggtatcactaagtttcttcgctaggaattctgggagctgtagtccaatgtaattacatctcttttt ttccttccttacgtgaagacgagtcagccacctgctgtagaaaccggaagatgacgcttgcagagcaggaaacgtcgcta catgatacgtattaagctgtcacgcgtggtgagcggctcagcatgaacggggtgaaagtgacgccccagcgcgaggggtt cccccctccccaagatgcgcccctgccggcacaggacttggcgcaggtccggcttttgatctcggtggcggtggccgtgt tcgtcgtcttagttctggtaatttggaaaattttccaagcaagaaagagcagtcggacagcagtgcttctggctggtctg tgtgattcaggaaaaactcttctatttgttaggctcttaacagaaaatttccgaaatactcagacttccataactgatag ttctgccttgtacagagtaaaaaatgacaagaataggaatgtgactttaattgaccttcctggccatgagagcttgcggc ttcagttcctggataggttcaaggctgcagctagggcaattgtgtttgttgtggatagtgtagctttccaacgggagatg aaagatgtggcagaatttctgtaccagctcctgactgacaacacaattctgaaaaatgcacctcccctcttaatagcctg caacaaacaagatgttacaatggcaaaatcttctaagctcatacagcagcaactggaaagagagctcaataccttacgag tgactctctctgctgccccaagtaccatggatagttcaagctcgggatctgtcattcagcttgggaagaagggaaaggag tttgacttctctcagatgcccatgaaagtcgaatttattgagtgtagtgccagaggaaacaaaggagaggagggtaatcc tgacattaatgacttagaaaaatggctagcaaaaattgcctgagcttgagtttttaaaaggagagtattgtaagctgccc agagttatcttgtgctaaaatgaggaaccaataaaattaattaataaataaaactaa |
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Protein
| Protein ID | habu1_s12804_g20887.t1 |
|---|---|
| Definition | - |
>habu1_s12804_g20887.t1 MNGVKVTPQREGFPPPQDAPLPAQDLAQVRLLISVAVAVFVVLVLVIWKIFQARKSSRTAVLLAGLCDSGKTLLFVRLLT ENFRNTQTSITDSSALYRVKNDKNRNVTLIDLPGHESLRLQFLDRFKAAARAIVFVVDSVAFQREMKDVAEFLYQLLTDN TILKNAPPLLIACNKQDVTMAKSSKLIQQQLERELNTLRVTLSAAPSTMDSSSSGSVIQLGKKGKEFDFSQMPMKVEFIE CSARGNKGEEGNPDINDLEKWLAKIA |
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