Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s12804_g20888
Locus habu1_scaffold12804 : 158629 ... 243575 : -
To GenomeBrowser habu1_scaffold12804:158629..243575
Genes list of scaffold habu1_scaffold12804

Annotation by Blast2GO
Annotation GO
ovotransferrin-like precursor GO:0005576 GO:0006826 GO:0006879 GO:0008199

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s12804_g20888.t2 2 1 Transferrin 63 387 0.0 630.5 0.0 0.0 388.7
habu1_s12804_g20888.t2 2 1 Phosphonate-bd 103 195 5.0e-13 48.9 6.5e-09 4.8e-05 22.8
habu1_s12804_g20888.t2 2 2 Transferrin 402 733 0.0 630.5 0.0 0.0 245.1
habu1_s12804_g20888.t2 2 2 Phosphonate-bd 425 538 5.0e-13 48.9 9.4e-08 0.0007 19.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 394.6
Venom grand-1 36.9
Pit, infrared sensing 246.0
Nose 4591.9
Brain-1 264.0
Eye 372.7
fetal fibroblast 0.9
venom gland-2 13.8
Brain-2 173.9
Spleen 64.6
Lung 1066.4
Liver 7573.1
Kidney 1.4
Pancreas 44.3
Small intestine 1.7
Large intestine 5.9
Stomach 3.7
heart 4.2
ovary 1.6
cheek muscle 3.5

Transcript
Transcript IDhabu1_s12804_g20888.t1
Definition-
>habu1_s12804_g20888.t1
taagtcaaggactaaaccggtcttaagtcgacgactacccaatcggtcgaatgctgttagccctctttgtatatcaagga
aatattccacgcttcttccagacaaacctgctttatagtcaaaagaaaaaatacagaatatttaaagggaaacaaccaga
gggggagaaaatgaaatttgccctccaagctactctgtcctttgggctgctagctctgtgtcttgcatcttcttctgtac
gatggtgcacagtatccaatgaagagcaggaaaaatgcctaaggctgaagagggaatgctttccccggcaacaatccatg
gatcttccagaactggtttgtgtgaggaagactgttcaccaggagtgcatagttgctattaaaaactcagaagcagatgc
catcactttagatgctggtcttattttagaagcaagcgtgaacccttattatctaactcctgttgtagctgaacttcata
caagaggctcaggagaatctactactagttattatgccgttgctgttgtgaagaaaggaactgtttcttcattggaagat
ctcagaaataagaactcttgtcacactggctataaaaaatctgcaggctggaacatcccaatgggaactcttgtgggaat
gaatttgctacagtgggatggaacagcaacggaacctgtagaaaaggctgcaggaaatttttttcgcggtggttgtgtcc
caggtctcgaaaatgtaccaaatatgtgcagtgcttgtgctggaaactgtggctggaatgacccctttgctggatatgca
ggagcttatcagtgtctgaagtctggaaatggagatgtggcttttgtgaacgaggcaatcgtattagctgatagtccagg
agaaagaagcaagtatgagttactttgtcttgatggcaccagaaagcctgttgaacaatatgaatcctgtcacttggcta
gagtgtcgtctcatgctgtggtggcacgacctgtggatggccgggcagacaaaatctgggcactcctctcttatgcgctg
gaacagaacaagcaagatcaatcaaggtgccaactttttgactcccctcttgactctggcaaagatctcctgtttaagga
cagcacagtcagtcttgttcaagtgcctgaaggaacagatgctgaactttacctgggtcctaagtactgtgctgcaataa
agaatatcaaaagagagagagctgatccagatcctggtaccacagaaagaattgtgtggtgtgcagtgggcaaggctgaa
caaaaaaaatgtgatgtgtggagtggacagagcaatggtgccattgaatgtgctgttgcagatactacagaagagtgcct
tgtcaaaatcataaaaggagaagctgacgccattaccttggatggagggcatgtctacactgcaggaaaatgtggccttg
tcccagtattgacagaaatcccttctgaagattctgctgcatgcatagatcccacgaaaggtacaaaagttaaaggctac
attgttgtagctgttgctaagaaaagagacactgaaatcaactggaccaatctgagaggaaaaaagtcctgtcatactgg
tgttggtagaactgctggctggaatgttcccatgggccttttaaacgagcaaaataatcttagttgtaactttgatcaat
tcttcgcagaaagctgtgcgccaggagcacctcccgaatcttcattgtgcaaactgtgcaaaggcagcggtggtgaaggc
ggcctctctcagaaacacaagtgtaaacctaacagcaatgaaatatactatagttataaaggtgctcttcgatgcttgaa
tgaagtaggagatgtagcttttgttaaacataccaccatcactgaggtcacagaaggtgagaacaaacctgcttgggcaa
gtggcttaacgtcttctgattttgttcttctgaacctaaatggtgatcgatgtcgtcatgatgactatgctagatgtcac
ttggcccaagtttgcaatcatgcagtagtatcaagacctgaacgagcaaaagcagttaaaaattctgtacttgagcaaca
gaaacaatttggaaagcatggaactcagaaagatgtcttccagatgttccaatctgaagccaaagatagtttgttcaaag
atggcacagaatgcgttgctgtaccaagtgaagatacctttgaaaaatatcttggggaggaatatctgcagtctcttgaa
ggacttgccaaatgttcatcttcaaaactccttaagatctgcaccttccacactcatgactggtgaatatcaagttctgc
agtgaaatgaaatggatgcttcacaattacttgccccaagttgacaaaagtctacttactttattcttctttaataccaa
caatctgttaaactttccattatggctttgtaactctgtagagtcactagtgcaaaaaataaatagaattaacatctaca
gttta
Transcript IDhabu1_s12804_g20888.t2
Definition-
>habu1_s12804_g20888.t2
taagtcaaggactaaaccggtcttaagtcgacgactacccaatcggtcgtaagtcgaggactttccctgcccgggagcgc
tgcgcatgcgtggttccgccccctgcgccggccgaggcatagctggcaagcggcagagacggagcaggccgaccaccagc
tggcccagcccaagggaggaatgctgttagccctctttgtatatcaaggaaatattccacgcttcttccagacaaacctg
ctttatagtcaaaagaaaaaatacagaatatttaaagggaaacaaccagagggggagaaaatgaaatttgccctccaagc
tactctgtcctttgggctgctagctctgtgtcttgcatcttcttctgtacgatggtgcacagtatccaatgaagagcagg
aaaaatgcctaaggctgaagagggaatgctttccccggcaacaatccatggatcttccagaactggtttgtgtgaggaag
actgttcaccaggagtgcatagttgctattaaaaactcagaagcagatgccatcactttagatgctggtcttattttaga
agcaagcgtgaacccttattatctaactcctgttgtagctgaacttcatacaagaggctcaggagaatctactactagtt
attatgccgttgctgttgtgaagaaaggaactgtttcttcattggaagatctcagaaataagaactcttgtcacactggc
tataaaaaatctgcaggctggaacatcccaatgggaactcttgtgggaatgaatttgctacagtgggatggaacagcaac
ggaacctgtagaaaaggctgcaggaaatttttttcgcggtggttgtgtcccaggtctcgaaaatgtaccaaatatgtgca
gtgcttgtgctggaaactgtggctggaatgacccctttgctggatatgcaggagcttatcagtgtctgaagtctggaaat
ggagatgtggcttttgtgaacgaggcaatcgtattagctgatagtccaggagaaagaagcaagtatgagttactttgtct
tgatggcaccagaaagcctgttgaacaatatgaatcctgtcacttggctagagtgtcgtctcatgctgtggtggcacgac
ctgtggatggccgggcagacaaaatctgggcactcctctcttatgcgctggaacagaacaagcaagatcaatcaaggtgc
caactttttgactcccctcttgactctggcaaagatctcctgtttaaggacagcacagtcagtcttgttcaagtgcctga
aggaacagatgctgaactttacctgggtcctaagtactgtgctgcaataaagaatatcaaaagagagagagctgatccag
atcctggtaccacagaaagaattgtgtggtgtgcagtgggcaaggctgaacaaaaaaaatgtgatgtgtggagtggacag
agcaatggtgccattgaatgtgctgttgcagatactacagaagagtgccttgtcaaaatcataaaaggagaagctgacgc
cattaccttggatggagggcatgtctacactgcaggaaaatgtggccttgtcccagtattgacagaaatcccttctgaag
attctgctgcatgcatagatcccacgaaaggtacaaaagttaaaggctacattgttgtagctgttgctaagaaaagagac
actgaaatcaactggaccaatctgagaggaaaaaagtcctgtcatactggtgttggtagaactgctggctggaatgttcc
catgggccttttaaacgagcaaaataatcttagttgtaactttgatcaattcttcgcagaaagctgtgcgccaggagcac
ctcccgaatcttcattgtgcaaactgtgcaaaggcagcggtggtgaaggcggcctctctcagaaacacaagtgtaaacct
aacagcaatgaaatatactatagttataaaggtgctcttcgatgcttgaatgaagtaggagatgtagcttttgttaaaca
taccaccatcactgaggtcacagaaggtgagaacaaacctgcttgggcaagtggcttaacgtcttctgattttgttcttc
tgaacctaaatggtgatcgatgtcgtcatgatgactatgctagatgtcacttggcccaagtttgcaatcatgcagtagta
tcaagacctgaacgagcaaaagcagttaaaaattctgtacttgagcaacagaaacaatttggaaagcatggaactcagaa
agatgtcttccagatgttccaatctgaagccaaagatagtttgttcaaagatggcacagaatgcgttgctgtaccaagtg
aagatacctttgaaaaatatcttggggaggaatatctgcagtctcttgaaggacttgccaaatgttcatcttcaaaactc
cttaagatctgcaccttccacactcatgactggtgaatatcaagttctgcagtgaaatgaaatggatgcttcacaattac
ttgccccaagttgacaaaagtctacttactttattcttctttaataccaacaatctgttaaactttccattatggctttg
taactctgtagagtcactagtgcaaaaaataaatagaattaacatctacagttta

Protein
Protein IDhabu1_s12804_g20888.t1
Definition-
>habu1_s12804_g20888.t1
MLLALFVYQGNIPRFFQTNLLYSQKKKYRIFKGKQPEGEKMKFALQATLSFGLLALCLASSSVRWCTVSNEEQEKCLRLK
RECFPRQQSMDLPELVCVRKTVHQECIVAIKNSEADAITLDAGLILEASVNPYYLTPVVAELHTRGSGESTTSYYAVAVV
KKGTVSSLEDLRNKNSCHTGYKKSAGWNIPMGTLVGMNLLQWDGTATEPVEKAAGNFFRGGCVPGLENVPNMCSACAGNC
GWNDPFAGYAGAYQCLKSGNGDVAFVNEAIVLADSPGERSKYELLCLDGTRKPVEQYESCHLARVSSHAVVARPVDGRAD
KIWALLSYALEQNKQDQSRCQLFDSPLDSGKDLLFKDSTVSLVQVPEGTDAELYLGPKYCAAIKNIKRERADPDPGTTER
IVWCAVGKAEQKKCDVWSGQSNGAIECAVADTTEECLVKIIKGEADAITLDGGHVYTAGKCGLVPVLTEIPSEDSAACID
PTKGTKVKGYIVVAVAKKRDTEINWTNLRGKKSCHTGVGRTAGWNVPMGLLNEQNNLSCNFDQFFAESCAPGAPPESSLC
KLCKGSGGEGGLSQKHKCKPNSNEIYYSYKGALRCLNEVGDVAFVKHTTITEVTEGENKPAWASGLTSSDFVLLNLNGDR
CRHDDYARCHLAQVCNHAVVSRPERAKAVKNSVLEQQKQFGKHGTQKDVFQMFQSEAKDSLFKDGTECVAVPSEDTFEKY
LGEEYLQSLEGLAKCSSSKLLKICTFHTHDW
Protein IDhabu1_s12804_g20888.t2
Definition-
>habu1_s12804_g20888.t2
MLLALFVYQGNIPRFFQTNLLYSQKKKYRIFKGKQPEGEKMKFALQATLSFGLLALCLASSSVRWCTVSNEEQEKCLRLK
RECFPRQQSMDLPELVCVRKTVHQECIVAIKNSEADAITLDAGLILEASVNPYYLTPVVAELHTRGSGESTTSYYAVAVV
KKGTVSSLEDLRNKNSCHTGYKKSAGWNIPMGTLVGMNLLQWDGTATEPVEKAAGNFFRGGCVPGLENVPNMCSACAGNC
GWNDPFAGYAGAYQCLKSGNGDVAFVNEAIVLADSPGERSKYELLCLDGTRKPVEQYESCHLARVSSHAVVARPVDGRAD
KIWALLSYALEQNKQDQSRCQLFDSPLDSGKDLLFKDSTVSLVQVPEGTDAELYLGPKYCAAIKNIKRERADPDPGTTER
IVWCAVGKAEQKKCDVWSGQSNGAIECAVADTTEECLVKIIKGEADAITLDGGHVYTAGKCGLVPVLTEIPSEDSAACID
PTKGTKVKGYIVVAVAKKRDTEINWTNLRGKKSCHTGVGRTAGWNVPMGLLNEQNNLSCNFDQFFAESCAPGAPPESSLC
KLCKGSGGEGGLSQKHKCKPNSNEIYYSYKGALRCLNEVGDVAFVKHTTITEVTEGENKPAWASGLTSSDFVLLNLNGDR
CRHDDYARCHLAQVCNHAVVSRPERAKAVKNSVLEQQKQFGKHGTQKDVFQMFQSEAKDSLFKDGTECVAVPSEDTFEKY
LGEEYLQSLEGLAKCSSSKLLKICTFHTHDW

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