Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s12804_g20895
Locus habu1_scaffold12804 : 363666 ... 393034 : +
To GenomeBrowser habu1_scaffold12804:363666..393034
Genes list of scaffold habu1_scaffold12804

Annotation by Blast2GO
Annotation GO
ubx domain-containing protein 7 GO:0005634 GO:0005667 GO:0008134 GO:0031625 GO:0034098 GO:0043130

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s12804_g20895.t3 1 1 UBA_4 25 54 5.0e-08 32.3 7.0e-10 2.1e-06 27.1
habu1_s12804_g20895.t3 1 1 Thioredoxin_7 153 233 6.3e-13 48.5 3.9e-16 1.2e-12 47.7
habu1_s12804_g20895.t3 1 1 UBX 407 483 2.3e-18 66.0 1.4e-21 4.1e-18 65.2

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 3.5
Venom grand-1 1.6
Pit, infrared sensing 2.3
Nose 2.5
Brain-1 3.7
Eye 3.3
fetal fibroblast 4.6
venom gland-2 5.0
Brain-2 3.8
Spleen 3.1
Lung 2.0
Liver 3.2
Kidney 3.5
Pancreas 3.0
Small intestine 2.9
Large intestine 2.0
Stomach 2.8
heart 2.5
ovary 16.8
cheek muscle 3.1

Transcript
Transcript IDhabu1_s12804_g20895.t1
Definition-
>habu1_s12804_g20895.t1
ggacgagcaggtggtgagtgttgttcggtgatcgaggcggcaagatggcggcgcccgggggctctgctgccgcctcagtg
ttgaaagggttaattcagcaatttaccgccatcacgggtgccagtgaaagtgcaggcaaacatatgcttgaagcatgcaa
caataatctggaaatggctgtcactatgttccttgatggtggaggcattgctgaagaacccagcactagttctgcaagtg
tatcaaacctgcgaccacatacagaagatgaagtgagggcacctattcctcaaaagcaagaaattctggttgaacccgaa
cccttatttggtgcaccaaaaagacgcagaccagctcgttcaatatttgatggctttcgggatttccagacagaaactat
tcggcaggagcaagaattgagaaatggaggagccatagataagaagctcactacccttgcagatctcttcaggccgccaa
ttgatttgatgcataaaggaagctttgaaacagccaaggaatgtggtcaaatgcagaacaagtggctcatgattaatata
cagaatgtgcaggattttgcctgtcagtgtctcaatcgtgatgtttggagcaatgatgctgtaaaaaatattatccggga
acacttcattttttggcaggtataccacgacagtgaggaaggacaaagatacatacaattctataaattgggagatttcc
cttatgtgtctatcctggaccccaggacagggcagaaactagtggaatggcatcagttagatgtaacttcttttttggac
caagtgactgggttcctaggtgaacatggacaactggacggacattccactagccctccccagaaacgtactcgctcaga
gagcttgattgatgcgagtgaagatagccagttggaagctgcaatcagggcatcattacaggaaacacattttgactctg
aacaaatcaagcaggaaagcagatcagatgaagagtccgaatcagagcttttctctggaagtgaggagtttatttctgtt
tgtggttctgatgatgatgagccagaaagttctgccaaatctagaaaatctccacacaaggatttgggatgtagaaaaga
ggaaggcagaaaacctcaacctgaaccaagaactgaacccgagatgacaataaaccacaggggactatcttctctagatt
caggagtgctagaagaaactgaaactaagccagaagatttacagaaggaaccaagcgtgaatggaccaaaagcacaacta
atgttaagatatccagatgggaagagggaacagatttcattgcctgaacaagctaagcttctggctctcatccgacatgt
acagtcaaaaggataccccaatgaacgttttgaactcctcaccaactttccccggaggaaactctcccatctggactata
acatcacgttgcaggaagctggtctttgtccacaagaaactgtatttgttcaggaaaggaattaattttctcccttgtca
tcttcacctacagtactaactagtacatatgcagaattgaaaacaggcagccatttgctgatttctctttcttcccattc
tgtatgctatcctcagtaagcgaacaaaatgaaaatggcagaaaaagttcatttggtattgatgctggaagaaagcttat
gtgttcagtagtttgttgctgtttcaaaataaagttgcctatacatccagcatgctgcagaagagaacaccaagagcaag
aataattttcttcccctgagaaaaagaaatctttttcatttttcaaaggtcatataaccaggcattaaggaattcttcag
acaaccatgtcaatatatgcaatctacctacatggaagagattttgtgtttccaattgacatgtgcattgtttggttttc
agcatgtgttctttttccttgggttccacatgttctgaaatcagaatgcttcctatacggctgctggttgcatgtaataa
aatgtcacacatttattgtgcacaggctttttaggaaagaagcataggttttaatgactgtgtgaagagattttgtgttt
tggctacaagtcaagaaaaaaaacaaatgatgtgctagattcattgcccaagtaacctttcataaatcattgactttgca
aaagggactgtagaatgtggaacatgaaagtgtctattttaaattgatttatatgtactgcttttgttagagaggaatgt
cataataaagaaaaataatagatgtacttagtggtataaagttgccttgtgtaacccagaactgcaggcttcctcctttt
cacagttaaaattgtagaaagggaattgatttctcttcttttcttttttcttttcaaaatgttaccagcagtgaaacatt
catagagattaaatataaaacatataaaacctcttcttaaggttttcgttcactattctgtcatttggatgtctttccca
ctgacatttagtgaaagcgcacagattctgggctccaagcaagatttttttcagtaattttaaaatatttttgatgaaca
attgaatttaattaagttaataaaatttaattaaagtacaaaccag
Transcript IDhabu1_s12804_g20895.t2
Definition-
>habu1_s12804_g20895.t2
aggccatgtactgtcaaatcttgggtatgacaattcagcgatcagaattacattcttgatcaaactcctacattaacttg
caaccaaccaatcaggcaatgccagctttgagactcaaaccagccaaggaatgtggtcaaatgcagaacaagtggctcat
gattaatatacagaatgtgcaggattttgcctgtcagtgtctcaatcgtgatgtttggagcaatgatgctgtaaaaaata
ttatccgggaacacttcattttttggcaggtataccacgacagtgaggaaggacaaagatacatacaattctataaattg
ggagatttcccttatgtgtctatcctggaccccaggacagggcagaaactagtggaatggcatcagttagatgtaacttc
ttttttggaccaagtgactgggttcctaggtgaacatggacaactggacggacattccactagccctccccagaaacgta
ctcgctcagagagcttgattgatgcgagtgaagatagccagttggaagctgcaatcagggcatcattacaggaaacacat
tttgactctgaacaaatcaagcaggaaagcagatcagatgaagagtccgaatcagagcttttctctggaagtgaggagtt
tatttctgtttgtggttctgatgatgatgagccagaaagttctgccaaatctagaaaatctccacacaaggatttgggat
gtagaaaagaggaaggcagaaaacctcaacctgaaccaagaactgaacccgagatgacaataaaccacaggggactatct
tctctagattcaggagtgctagaagaaactgaaactaagccagaagatttacagaaggaaccaagcgtgaatggaccaaa
agcacaactaatgttaagatatccagatgggaagagggaacagatttcattgcctgaacaagctaagcttctggctctca
tccgacatgtacagtcaaaaggataccccaatgaacgttttgaactcctcaccaactttccccggaggaaactctcccat
ctggactataacatcacgttgcaggaagctggtctttgtccacaagaaactgtatttgttcaggaaaggaattaattttc
tcccttgtcatcttcacctacagtactaactagtacatatgcagaattgaaaacaggcagccatttgctgatttctcttt
cttcccattctgtatgctatcctcagtaagcgaacaaaatgaaaatggcagaaaaagttcatttggtattgatgctggaa
gaaagcttatgtgttcagtagtttgttgctgtttcaaaataaagttgcctatacatccagcatgctgcagaagagaacac
caagagcaagaataattttcttcccctgagaaaaagaaatctttttcatttttcaaaggtcatataaccaggcattaagg
aattcttcagacaaccatgtcaatatatgcaatctacctacatggaagagattttgtgtttccaattgacatgtgcattg
tttggttttcagcatgtgttctttttccttgggttccacatgttctgaaatcagaatgcttcctatacggctgctggttg
catgtaataaaatgtcacacatttattgtgcacaggctttttaggaaagaagcataggttttaatgactgtgtgaagaga
ttttgtgttttggctacaagtcaagaaaaaaaacaaatgatgtgctagattcattgcccaagtaacctttcataaatcat
tgactttgcaaaagggactgtagaatgtggaacatgaaagtgtctattttaaattgatttatatgtactgcttttgttag
agaggaatgtcataataaagaaaaataatagatgtacttagtggtataaagttgccttgtgtaacccagaactgcaggct
tcctccttttcacagttaaaattgtagaaagggaattgatttctcttcttttcttttttcttttcaaaatgttaccagca
gtgaaacattcatagagattaaatataaaacatataaaacctcttcttaaggttttcgttcactattctgtcatttggat
gtctttcccactgacatttagtgaaagcgcacagattctgggctccaagcaagatttttttcagtaattttaaaatattt
ttgatgaacaattgaatttaattaagttaataaaatttaattaaagtacaaaccag
Transcript IDhabu1_s12804_g20895.t3
Definition-
>habu1_s12804_g20895.t3
tcggaaacagtctcttcaagggagtttgcgggagataaaggggaaggggccccggtaggccgacgcagggatgggggaga
agaagctaaggtggcaccgaaaaagaaatatgacggagcgaaccgaaaaagaagttcgcggaggtgccagtgaaagtgca
ggcaaacatatgcttgaagcatgcaacaataatctggaaatggctgtcactatgttccttgatggtggaggcattgctga
agaacccagcactagttctgcaagtgtatcaaacctgcgaccacatacagaagatgaagtgagggcacctattcctcaaa
agcaagaaattctggttgaacccgaacccttatttggtgcaccaaaaagacgcagaccagctcgttcaatatttgatggc
tttcgggatttccagacagaaactattcggcaggagcaagaattgagaaatggaggagccatagataagaagctcactac
ccttgcagatctcttcaggccgccaattgatttgatgcataaaggaagctttgaaacagccaaggaatgtggtcaaatgc
agaacaagtggctcatgattaatatacagaatgtgcaggattttgcctgtcagtgtctcaatcgtgatgtttggagcaat
gatgctgtaaaaaatattatccgggaacacttcattttttggcaggtataccacgacagtgaggaaggacaaagatacat
acaattctataaattgggagatttcccttatgtgtctatcctggaccccaggacagggcagaaactagtggaatggcatc
agttagatgtaacttcttttttggaccaagtgactgggttcctaggtgaacatggacaactggacggacattccactagc
cctccccagaaacgtactcgctcagagagcttgattgatgcgagtgaagatagccagttggaagctgcaatcagggcatc
attacaggaaacacattttgactctgaacaaatcaagcaggaaagcagatcagatgaagagtccgaatcagagcttttct
ctggaagtgaggagtttatttctgtttgtggttctgatgatgatgagccagaaagttctgccaaatctagaaaatctcca
cacaaggatttgggatgtagaaaagaggaaggcagaaaacctcaacctgaaccaagaactgaacccgagatgacaataaa
ccacaggggactatcttctctagattcaggagtgctagaagaaactgaaactaagccagaagatttacagaaggaaccaa
gcgtgaatggaccaaaagcacaactaatgttaagatatccagatgggaagagggaacagatttcattgcctgaacaagct
aagcttctggctctcatccgacatgtacagtcaaaaggataccccaatgaacgttttgaactcctcaccaactttccccg
gaggaaactctcccatctggactataacatcacgttgcaggaagctggtctttgtccacaagaaactgtatttgttcagg
aaaggaattaattttctcccttgtcatcttcacctacagtactaactagtacatatgcagaattgaaaacaggcagccat
ttgctgatttctctttcttcccattctgtatgctatcctcagtaagcgaacaaaatgaaaatggcagaaaaagttcattt
ggtattgatgctggaagaaagcttatgtgttcagtagtttgttgctgtttcaaaataaagttgcctatacatccagcatg
ctgcagaagagaacaccaagagcaagaataattttcttcccctgagaaaaagaaatctttttcatttttcaaaggtcata
taaccaggcattaaggaattcttcagacaaccatgtcaatatatgcaatctacctacatggaagagattttgtgtttcca
attgacatgtgcattgtttggttttcagcatgtgttctttttccttgggttccacatgttctgaaatcagaatgcttcct
atacggctgctggttgcatgtaataaaatgtcacacatttattgtgcacaggctttttaggaaagaagcataggttttaa
tgactgtgtgaagagattttgtgttttggctacaagtcaagaaaaaaaacaaatgatgtgctagattcattgcccaagta
acctttcataaatcattgactttgcaaaagggactgtagaatgtggaacatgaaagtgtctattttaaattgatttatat
gtactgcttttgttagagaggaatgtcataataaagaaaaataatagatgtacttagtggtataaagttgccttgtgtaa
cccagaactgcaggcttcctccttttcacagttaaaattgtagaaagggaattgatttctcttcttttcttttttctttt
caaaatgttaccagcagtgaaacattcatagagattaaatataaaacatataaaacctcttcttaaggttttcgttcact
attctgtcatttggatgtctttcccactgacatttagtgaaagcgcacagattctgggctccaagcaagatttttttcag
taattttaaaatatttttgatgaacaattgaatttaattaagttaataaaatttaattaaagtacaaaccag

Protein
Protein IDhabu1_s12804_g20895.t1
Definition-
>habu1_s12804_g20895.t1
MAAPGGSAAASVLKGLIQQFTAITGASESAGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSSASVSNLRPHTEDEVRAP
IPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKEC
GQMQNKWLMINIQNVQDFACQCLNRDVWSNDAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLV
EWHQLDVTSFLDQVTGFLGEHGQLDGHSTSPPQKRTRSESLIDASEDSQLEAAIRASLQETHFDSEQIKQESRSDEESES
ELFSGSEEFISVCGSDDDEPESSAKSRKSPHKDLGCRKEEGRKPQPEPRTEPEMTINHRGLSSLDSGVLEETETKPEDLQ
KEPSVNGPKAQLMLRYPDGKREQISLPEQAKLLALIRHVQSKGYPNERFELLTNFPRRKLSHLDYNITLQEAGLCPQETV
FVQERN
Protein IDhabu1_s12804_g20895.t2
Definition-
>habu1_s12804_g20895.t2
MPALRLKPAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNDAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYV
SILDPRTGQKLVEWHQLDVTSFLDQVTGFLGEHGQLDGHSTSPPQKRTRSESLIDASEDSQLEAAIRASLQETHFDSEQI
KQESRSDEESESELFSGSEEFISVCGSDDDEPESSAKSRKSPHKDLGCRKEEGRKPQPEPRTEPEMTINHRGLSSLDSGV
LEETETKPEDLQKEPSVNGPKAQLMLRYPDGKREQISLPEQAKLLALIRHVQSKGYPNERFELLTNFPRRKLSHLDYNIT
LQEAGLCPQETVFVQERN
Protein IDhabu1_s12804_g20895.t3
Definition-
>habu1_s12804_g20895.t3
MGEKKLRWHRKRNMTERTEKEVRGGASESAGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSSASVSNLRPHTEDEVRAP
IPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKEC
GQMQNKWLMINIQNVQDFACQCLNRDVWSNDAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLV
EWHQLDVTSFLDQVTGFLGEHGQLDGHSTSPPQKRTRSESLIDASEDSQLEAAIRASLQETHFDSEQIKQESRSDEESES
ELFSGSEEFISVCGSDDDEPESSAKSRKSPHKDLGCRKEEGRKPQPEPRTEPEMTINHRGLSSLDSGVLEETETKPEDLQ
KEPSVNGPKAQLMLRYPDGKREQISLPEQAKLLALIRHVQSKGYPNERFELLTNFPRRKLSHLDYNITLQEAGLCPQETV
FVQERN

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