Gene
| Gene Model ID | habu1_s1301_g04554 |
|---|---|
| Locus | habu1_scaffold1301 : 187196 ... 200226 : + |
| To GenomeBrowser | habu1_scaffold1301:187196..200226 |
| Genes list of scaffold | habu1_scaffold1301 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| vacuolar-sorting protein snf8 | GO:0000814 GO:0005667 GO:0006357 GO:0008134 GO:0042803 GO:0043328 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1301_g04554.t1 | 1 | 1 | EAP30 | 6 | 225 | 0.0 | 228.5 | 0.0 | 0.0 | 228.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1301_g04554.t1 | gi|327275832|ref|XP_003222676.1| | PREDICTED: vacuolar-sorting protein SNF8 [Anolis carolinensis] | 0.0 |
| habu1_s1301_g04554.t1 | gi|530624824|ref|XP_005301964.1| | PREDICTED: vacuolar-sorting protein SNF8 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s1301_g04554.t1 | gi|326934063|ref|XP_003213115.1| | PREDICTED: vacuolar-sorting protein SNF8 [Meleagris gallopavo] | 0.0 |
| habu1_s1301_g04554.t1 | gi|557280742|ref|XP_006023359.1| | PREDICTED: vacuolar-sorting protein SNF8 [Alligator sinensis] | 0.0 |
| habu1_s1301_g04554.t1 | gi|50760739|ref|XP_418112.1| | PREDICTED: vacuolar-sorting protein SNF8 [Gallus gallus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 11.9 |
| Venom grand-1 | 7.7 |
| Pit, infrared sensing | 9.7 |
| Nose | 8.2 |
| Brain-1 | 3.9 |
| Eye | 7.7 |
| fetal fibroblast | 14.3 |
| venom gland-2 | 9.5 |
| Brain-2 | 3.4 |
| Spleen | 9.4 |
| Lung | 6.5 |
| Liver | 13.2 |
| Kidney | 13.4 |
| Pancreas | 17.8 |
| Small intestine | 10.1 |
| Large intestine | 8.5 |
| Stomach | 11.2 |
| heart | 4.1 |
| ovary | 12.2 |
| cheek muscle | 3.4 |
Transcript
| Transcript ID | habu1_s1301_g04554.t1 |
|---|---|
| Definition | - |
>habu1_s1301_g04554.t1 cgttctccttcttcctcccccgtgcaaagatgcaccgccggggcgtgggggccggcgccatcgccaaaaaaaagttggca gaggccaaatataaggaacgtgggacagttttggctgaagaccagttagcccagatgtctaagcagctggagacatttaa aagcaacctagaagagtttgctagtaaacacaaacaagaaatccgtaaaaatccggagttcagagtccagtttcaaaata tgtgtgcaacaattggtgttgatccactagcctctggtaaaggattctggtcagaaatgttgggtgtcggagatttttac tatgagttaggtgtccagattattgaagtctgcttggctctcaagcacagaaatggaggattaataatattggatgaact ccatcaacaggtgctcaaaggaagaggaaaatttgctcaagatgttagccaagatgaccttatccgagcaattaagaagc tgaaagttttaggaaatggcttcgggattcttcctgttggtgggacatacctgatccagtctgtgccagctgaactaaac atggatcacactgttgtgatacagcttgctgagaaaaaggggtatgtgactataagtgaaatcaagtccagcttaaaatg ggaaatggaacgagccaagcaagtgctggatcatttgctgaaggaagggatggcctggcttgatacacaagctccaggag agccacagtactggctacctgccctctttacagaactgtactctcaggaaatcacaccagaagaagcaaaggaagcttta ccttgacaatatcaaagatgagtaataactgaacatttgctgattgttaatatggtaacattgaacggtagttattattt tggatcttaaaatatttgtaagaaaatatctgctttgctaatacctaatttcagcatgtatttcatactaaatgtggatt tctgccaaatgaagatttttatttcattagcaagtttctagttcttgtaatgaggatgagatggcaggagggaatctgtc caaaattgtagccttttctttcagttcttctaaatgtttagaatgaggattgatgtcagatgctaaaactgtttgatttc ttttcatttgcttatcccaagtttgttgagtagtatattggctgaactgtatacatactgaatcccttcacttaaagggg tctgtttctgtatgatgaaacagctggacttctttattgctacttggattttgggtaaaggaccaaactattattattat ttccaacttatgtatcattggaggtttgcacaatttcattttttttaaaaaaagcaagaatatcttgaaagacagtttag aaagtcatgggtaaaacttagttcaatttcagccattcaggcagtcagggtttctctgatctgagatactgtgtgaaaac ataccttcacaaccgtaaccatgttgtgccttagcatgttgaaatctgtaaacagtatattcttccatatttgtgcagtg cacataaaaatttgaaattcataaagctatgtattaaacttcatgttgtgggtataaaattttattgaccgtttgaaaaa tcattgactgcattgaagtcttactgatttccataaatcaataagcttatgttctgaatataattcatggatataaaaaa cagacaggataaaacttatttgagttacttaggctggtagaagaattttttgtagctatattcacagatcatgctgtgtg gaagaagaaactgcttcctgtaacatcctaagaatcatcttacgacttcatacaaaatacaaggaagaatttattaggga taatttatgtgcagagttggactgctatagattgatgccctatccagtggtgttgaggttacgcgtagatcaagagacag ctgtttatctagaagatgcaagcaattggctaatgacttcccacaaaaaagtaccagacaaagtcatactgtagtacagg aactcaatctaaggatattttgagcagcagaatgccttctcttatatcccaaaagaagtacaagagcagctggaaggata ctgcctatgaacatacaggatgtttaaagggagaggtgggatgaatggcagatacaagcatggaaccctgtacattacta ggctgatggctgaatacagtctttcctatagaatggctcctgcttcagatcacacgggcatcaacaatcaacatcaattc ctccaattttctaaaggcttagagccagttctaaaagtgctaagtcttgtggatttaaacaaatcttcagaagtctggaa cctttcctgtattataggtgcaatctggaagaatggagttatgatagattttatagaaaaactcatccactagtgtgcaa ctccatatttcaggttcaataaactctttattaaaataagaccgg |
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Protein
| Protein ID | habu1_s1301_g04554.t1 |
|---|---|
| Definition | - |
>habu1_s1301_g04554.t1 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLETFKSNLEEFASKHKQEIRKNPEFRVQFQNMCATIGVDPL ASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIILDELHQQVLKGRGKFAQDVSQDDLIRAIKKLKVLGNGFGI LPVGGTYLIQSVPAELNMDHTVVIQLAEKKGYVTISEIKSSLKWEMERAKQVLDHLLKEGMAWLDTQAPGEPQYWLPALF TELYSQEITPEEAKEALP |
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