Gene
| Gene Model ID | habu1_s1301_g04563 |
|---|---|
| Locus | habu1_scaffold1301 : 488120 ... 499509 : - |
| To GenomeBrowser | habu1_scaffold1301:488120..499509 |
| Genes list of scaffold | habu1_scaffold1301 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| reticulocalbin- partial | GO:0005509 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1301_g04563.t1 | 2 | 1 | EF-hand_7 | 77 | 134 | 2.5e-25 | 88.4 | 7.2e-15 | 1.3e-11 | 44.4 |
| habu1_s1301_g04563.t1 | 4 | 1 | EF-hand_1 | 79 | 103 | 1.2e-23 | 80.5 | 4.2e-07 | 0.00078 | 18.5 |
| habu1_s1301_g04563.t1 | 3 | 1 | EF-hand_6 | 80 | 102 | 3.3e-17 | 60.7 | 8.6e-06 | 0.016 | 15.0 |
| habu1_s1301_g04563.t1 | 3 | 2 | EF-hand_6 | 117 | 134 | 3.3e-17 | 60.7 | 5.5e-06 | 0.01 | 15.6 |
| habu1_s1301_g04563.t1 | 4 | 2 | EF-hand_1 | 117 | 135 | 1.2e-23 | 80.5 | 1.7e-07 | 0.00031 | 19.8 |
| habu1_s1301_g04563.t1 | 2 | 2 | EF-hand_7 | 163 | 220 | 2.5e-25 | 88.4 | 7.3e-13 | 1.4e-09 | 37.9 |
| habu1_s1301_g04563.t1 | 3 | 3 | EF-hand_6 | 165 | 187 | 3.3e-17 | 60.7 | 3.2e-06 | 0.006 | 16.3 |
| habu1_s1301_g04563.t1 | 4 | 3 | EF-hand_1 | 165 | 186 | 1.2e-23 | 80.5 | 2.1e-06 | 0.004 | 16.3 |
| habu1_s1301_g04563.t1 | 4 | 4 | EF-hand_1 | 201 | 219 | 1.2e-23 | 80.5 | 5.1e-06 | 0.0095 | 15.1 |
| habu1_s1301_g04563.t1 | 1 | 1 | EF-hand_5 | 202 | 219 | 9.5e-13 | 46.8 | 2.3e-06 | 0.0042 | 16.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1301_g04563.t1 | gi|602634658|ref|XP_007424200.1| | PREDICTED: reticulocalbin-1-like [Python bivittatus] | 0.0 |
| habu1_s1301_g04563.t1 | gi|327275971|ref|XP_003222745.1| | PREDICTED: reticulocalbin-3 [Anolis carolinensis] | 0.0 |
| habu1_s1301_g04563.t1 | gi|564236051|ref|XP_006274936.1| | PREDICTED: reticulocalbin-1-like [Alligator mississippiensis] | 0.0 |
| habu1_s1301_g04563.t1 | gi|557258548|ref|XP_006014968.1| | PREDICTED: reticulocalbin-1-like isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s1301_g04563.t1 | gi|557258554|ref|XP_006014971.1| | PREDICTED: reticulocalbin-1-like isoform X4 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 58.4 |
| Venom grand-1 | 104.4 |
| Pit, infrared sensing | 45.7 |
| Nose | 31.3 |
| Brain-1 | 22.5 |
| Eye | 13.3 |
| fetal fibroblast | 110.9 |
| venom gland-2 | 314.7 |
| Brain-2 | 35.5 |
| Spleen | 20.4 |
| Lung | 5.3 |
| Liver | 12.1 |
| Kidney | 11.2 |
| Pancreas | 46.8 |
| Small intestine | 1.5 |
| Large intestine | 9.9 |
| Stomach | 4.8 |
| heart | 3.1 |
| ovary | 2.1 |
| cheek muscle | 4.3 |
Transcript
| Transcript ID | habu1_s1301_g04563.t1 |
|---|---|
| Definition | - |
>habu1_s1301_g04563.t1 ccggtggcctcgccttcaaggcgctgcgggaaaacgtgggaagaagggagctttgtgtcaacgtggcgcagacggaccag tccccgagcgctcggccacgcccatcatcccaccgtagacccggattggatattgcagagatgaggggcgtgcccggggg ggggggagataccacaggagtgaagagatgaactggggaagcattccgagagtgggcttcgtgggcgttgcagctccttt ggaggtgtacaatggcttggcagaatacactttgctgctattatctgttgaccgtatgcctcgtctgggcccaggccaag ccaccccctgacaagaaggatcgtgtccaccatggtcaagacttcagtgatcatccccacgatgacagtcaagacttccg ttatgatcatgaagcgtttttaggcaaagaagatgccaagacatttgaccaactaactcctgaggagagcaaagagaggc tggggaagattgtggaccgaattgaccgagatgggaatggttttgtgactcagcctgaattgaaggattggatcaagcat actcagaaccgctatatctatgagagtgtgaacaagaactggaaggactatgacaaggatagtgatggccaaatcacttg gaatgagttcaaaagcaccacttatgggcactatgaaggagaagagtttggtgatcttgaggacaaaaattcatatcgaa aaatgttggccagggatgagcgacgattcaaagctgctgacaaaaatggagatatgagtgtgacaaaagaggaattcaca gccttccttcatcctgaagagtttgaccacatgagggacattatagtgacggaaaccctggaggacatagataagaatgg tgatggctttgtagaagttgatgagtatcttggtgacatatatgcccctgaaactggggaaccagaacctagctgggtga caagtgaacgccaacaattcttggaacaccgagatatcaacaaagatgggaaaatggatcgggaggaaattgggcactgg atcctgcccacagattatgatcatgctgaagtggaatccaagcatctccttattcagtcggacaaagatctggatgataa aataaccaagcaagagattttggacaattggaacatgtttgtggggagccaggctaccaactatggtgaagatttgacaa agaagcatgatgaactgtgattggagtgggtgggggatatacaacagcgggttttcccttacatgggagtgggagaagca cactccagaaggaattgctgtctatttattgttggaagggcctgcttaaactttcttcaaaaaataatgtagctggcata cttgggtggtttcccctaggatccattcctgttcttctgcagcctctgtctcccccaaagcacagtgagcccttgtcatg ttatgaagatctccatgttccagaggcatttgggaagaaggagattaaatacatccacaccttctttcatcactgcatct aatctcttctgtaatgttcttaatgcacttcaattcttcccttgcaagttccacactctaagggaaagcaaagattagct ccttcaaatgtttcccttcttttaagaagacaaatacggctgttttcttttcaaacacttgtctgggacctgttgggaat aatgaaataaccactcggatttaaaattacttccaatgtctgttttatatagataaaaaaaagttgaatgcaagttgaa |
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Protein
| Protein ID | habu1_s1301_g04563.t1 |
|---|---|
| Definition | - |
>habu1_s1301_g04563.t1 MAWQNTLCCYYLLTVCLVWAQAKPPPDKKDRVHHGQDFSDHPHDDSQDFRYDHEAFLGKEDAKTFDQLTPEESKERLGKI VDRIDRDGNGFVTQPELKDWIKHTQNRYIYESVNKNWKDYDKDSDGQITWNEFKSTTYGHYEGEEFGDLEDKNSYRKMLA RDERRFKAADKNGDMSVTKEEFTAFLHPEEFDHMRDIIVTETLEDIDKNGDGFVEVDEYLGDIYAPETGEPEPSWVTSER QQFLEHRDINKDGKMDREEIGHWILPTDYDHAEVESKHLLIQSDKDLDDKITKQEILDNWNMFVGSQATNYGEDLTKKHD EL |
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