Gene
| Gene Model ID | habu1_s13214_g21010 |
|---|---|
| Locus | habu1_scaffold13214 : 1 ... 109585 : + |
| To GenomeBrowser | habu1_scaffold13214:1..109585 |
| Genes list of scaffold | habu1_scaffold13214 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| vacuolar protein sorting-associated protein 41 homolog | GO:0005765 GO:0005769 GO:0005770 GO:0005798 GO:0005829 GO:0006886 GO:0008017 GO:0008270 GO:0015630 GO:0030897 GO:0045298 GO:0048193 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s13214_g21010.t2 | 1 | 1 | Clathrin | 492 | 628 | 3.6e-25 | 88.2 | 3.2e-28 | 3.6e-25 | 88.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s13214_g21010.t2 | gi|530587298|ref|XP_005287382.1| | PREDICTED: vacuolar protein sorting-associated protein 41 homolog isoform X1 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 11.7 |
| Venom grand-1 | 5.6 |
| Pit, infrared sensing | 7.4 |
| Nose | 5.1 |
| Brain-1 | 9.1 |
| Eye | 10.2 |
| fetal fibroblast | 10.1 |
| venom gland-2 | 6.5 |
| Brain-2 | 12.2 |
| Spleen | 6.5 |
| Lung | 7.5 |
| Liver | 9.5 |
| Kidney | 6.1 |
| Pancreas | 7.0 |
| Small intestine | 6.1 |
| Large intestine | 6.1 |
| Stomach | 6.8 |
| heart | 11.7 |
| ovary | 4.8 |
| cheek muscle | 14.6 |
Transcript
| Transcript ID | habu1_s13214_g21010.t1 |
|---|---|
| Definition | - |
>habu1_s13214_g21010.t1 agtccagtcaagatcaaccagattagccttgatgaaagtggtgagcacttgggtgtgtgttctgaagatggcaaggttca ggtatttggattgtatacaggagaagaattccacgaaacatttgattgcccaattaaaattgttgctgttcaccctcaat ttgtgagatcacactgtaagcagtttgtaacaggaggaaacaaattattgttatttgaaaagaattggatgaatagatgg aagtattctgttttacatgaaggagagggacctataagaaacgtgaaatggagaggaaatctgattgcatgggccaacaa tatgggcgtgaagatatttgacgtgattgctaagcaaagaatcaccaatgtgccccgagacgatataagcctccgtcctg atatgtatccctgcagcctttgctggaaagataatttaacactgattattggctggggaaattcagtaaagatatgttca gtgaaagaacggcatgcaagtgaaatacgcgatctacctagtcgttatgtggaaatagtgtcccagttcaacactgaatt ttatatcagtgggattgcacctctctgtgaccagcttgtcatactttcatttgtaaaggagatttcagagaaaatggaaa gagaatgttatgcccgaccaagacttgatataattcaaccatttcctgaatcttgtgaagaaatatcttccgatgcactc acagtaagatgctttcaagaaaatgaatgccgagattattgtttagaatattctgaaggtgaatcacttttttatatcgt cagcccgagtgatgtggtagtggccaaagaacgagatcaagatgatcatattgaatggctcttggagaaaaaaaaatatg aagaagctttgatggcagctgagatcagtcagaagactattaaaaagcacaagattcaggatataggtttagcatacata aaccatctattagaaattggagattatgatttggcagcaagaaaatgccagaagatacttggcaaaaataccaatttatg ggaatgtgaagtatatagatttaaagaaatcgggcaacttaaggcaattagccactatttgccaagacaagattccatcc taaagcctttcgtttatgaaatggttctgcatgaatttctagagagcgattatgagggttttgcaactttaattaaagaa tggcctgggaacctgtacaacaatccaatcattgtccatgctgtattggaccatctgaagagagatccacagaacaggac attgctgaaaactctagcagagttgtatacctacgaccagcgctatagaaaggcacttgaaatttacctcacactgagac ataaagatgttttccagctgatccacaaacacaatcttttcagttccatcagggacaaaattgttctactaatggagttt gattcagagaaagccgttgacatgtttttggataatgaagataaaatctctattgataaagttgtggaagaattaaaaga taggcctgaactgcagcatgtgtatttgcataagctgttcaagagagatcatcataaaggtcaaaagtatcatgagaaac aaattagtctgtatgctgaatacgaccggccaaatttactcccttttttgaaaaatagcacccattgcccattggaaaag gctcttgaaatttgtcagcaaagattctttgttgaagagactgtttatcttttgagtcgaatgggcaatagtcgaagtgc cctgaaaatgatcatggaagaactaaatgatgtagataaagctatagagtttgctaaggaacaagatgatgctgaacttt gggaagaccttattttgtattcaattgacaaacctccttttattacaggcttgttaaacaatatagggactcatgttgac cctattctcctgattcatcgtattaaggaaagcatggagattccaaacctgagagattcattagtaaagattcttcagga ttataatttgcagattttgcttcgggaaggatgcaagaagattcttgtggctgattctctttcattgctgaaaaagatgc accgaacacaaatgcgtggagtacttgtggatgaggaaaatatctgtgaaatatgcctttctcctatactgcctacagat gcatctaaatctttcagtgtaatagtatttcattgcaggcatatgttccacaaagaatgttttcctgaacctaacacaga atcttcattacacttctgtaatatttgcagtgctaaacaccgtggaccaggcagcgccatcttggagatgaaaaaataat cttctctagcatatcaaaaacatctgtatgtgtatgtgactgctttcatgtggacaaaagaacaatgcttcatatatatc ttgctttgtttaactatatgataagaagacttttaatcttacatctcactgatatttcctgtacaaatttgaagtcctaa gagcaaatgcaggctattgttactgactcaatatggctgcagttcaaatcagtcacctgtctggcaaaacctatattata taacataagataaatgtttacgagaaaatttatagt |
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| Transcript ID | habu1_s13214_g21010.t2 |
| Definition | - |
>habu1_s13214_g21010.t2 agtccagtcaagatcaaccagattagccttgatgaaagtggtgagcacttgggtgtgtgttctgaagatggcaaggttca ggtatttggattgtatacaggagaagaattccacgaaacatttgattgcccaattaaaattgttgctgttcaccctcaat ttgtgagatcacactgtaagcagtttgtaacaggaggaaacaaattattgttatttgaaaagaattggatgaatagatgg aagtattctgttttacatgaaggagagggacctataagaaacgtgaaatggagaggaaatctgattgcatgggccaacaa tatgggcgtgaagatatttgacgtgattgctaagcaaagaatcaccaatgtgccccgagacgatataagcctccgtcctg atatgtatccctgcagcctttgctggaaagataatttaacactgattattggctggggaaattcagtaaagatatgttca gtgaaagaacggcatgcaagtgaaatacgcgatctacctagtcgttatgtggaaatagtgtcccagttcaacactgaatt ttatatcagtgggattgcacctctctgtgaccagcttgtcatactttcatttgtaaaggagatttcagagaaaatggaaa gagaatgttatgcccgaccaagacttgatataattcaaccatttcctgaatcttgtgaagaaatatcttccgatgcactc acagtaagatgctttcaagaaaatgaatgccgagattattgtttagaatattctgaaggtgaatcacttttttatatcgt cagcccgagtgatgtggtagtggccaaagaacgagatcaagatgatcatattgaatggctcttggagaaaaaaaaatatg aagaagctttgatggcagctgagatcagtcagaagactattaaaaagcacaagattcaggatataggtttagcatacata aaccatctattagaaattggagattatgatttggcagcaagaaaatgccagaagatacttggcaaaaataccaatttatg ggaatgtgaagtatatagatttaaagaaatcgggcaacttaaggcaattagccactatttgccaagacaagattccatcc taaagcctttcgtttatgaaatggttctgcatgaatttctagagagcgattatgagggttttgcaactttaattaaagaa tggcctgggaacctgtacaacaatccaatcattgtccatgctgtattggaccatctgaagagagatccacagaacaggac attgctgaaaactctagcagagttgtatacctacgaccagcgctatagaaaggcacttgaaatttacctcacactgagac ataaagatgttttccagctgatccacaaacacaatcttttcagttccatcagggacaaaattgttctactaatggagttt gattcagagaaagccgttgacatgtttttggataatgaagataaaatctctattgataaagttgtggaagaattaaaaga taggcctgaactgcagcatgtgtatttgcataagctgttcaagagagatcatcataaaggtcaaaagtatcatgagaaac aaattagtctgtatgctgaatacgaccggccaaatttactcccttttttgaaaaatagcacccattgcccattggaaaag gctcttgaaatttgtcagcaaagattctttgttgaagagactgtttatcttttgagtcgaatgggcaatagtcgaagtgc cctgaaaatgatcatggaagaactaaatgatgtagataaagctatagagtttgctaaggaacaagatgatgctgaacttt gggaagaccttattttgtattcaattgacaaacctccttttattacaggcttgttaaacaatatagggactcatgttgac cctattctcctgattcatcgtattaaggaaagcatggagattccaaacctgagagattcattagtaaagattcttcagga ttataatttgcagattttgcttcgggaaggatgcaagaagattcttgtggctgattctctttcattgctgaaaaagatgc accgaacacaaatgcgtggagtacttgtggatgaggaaaatatctgtgaaatatgcctttctcctatactgcctacagat gcatctaaatctttcagtgtaatagtatttcattgcaggcatatgttccacaaagaatgttttcctgaacctaacacaga cttgcaagttacagtactaaggtgatgcaaaataatctttcttttcccacttccatctgtctaatacagtgttttttaac agttgtatta |
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Protein
| Protein ID | habu1_s13214_g21010.t1 |
|---|---|
| Definition | - |
>habu1_s13214_g21010.t1 SPVKINQISLDESGEHLGVCSEDGKVQVFGLYTGEEFHETFDCPIKIVAVHPQFVRSHCKQFVTGGNKLLLFEKNWMNRW KYSVLHEGEGPIRNVKWRGNLIAWANNMGVKIFDVIAKQRITNVPRDDISLRPDMYPCSLCWKDNLTLIIGWGNSVKICS VKERHASEIRDLPSRYVEIVSQFNTEFYISGIAPLCDQLVILSFVKEISEKMERECYARPRLDIIQPFPESCEEISSDAL TVRCFQENECRDYCLEYSEGESLFYIVSPSDVVVAKERDQDDHIEWLLEKKKYEEALMAAEISQKTIKKHKIQDIGLAYI NHLLEIGDYDLAARKCQKILGKNTNLWECEVYRFKEIGQLKAISHYLPRQDSILKPFVYEMVLHEFLESDYEGFATLIKE WPGNLYNNPIIVHAVLDHLKRDPQNRTLLKTLAELYTYDQRYRKALEIYLTLRHKDVFQLIHKHNLFSSIRDKIVLLMEF DSEKAVDMFLDNEDKISIDKVVEELKDRPELQHVYLHKLFKRDHHKGQKYHEKQISLYAEYDRPNLLPFLKNSTHCPLEK ALEICQQRFFVEETVYLLSRMGNSRSALKMIMEELNDVDKAIEFAKEQDDAELWEDLILYSIDKPPFITGLLNNIGTHVD PILLIHRIKESMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMRGVLVDEENICEICLSPILPTD ASKSFSVIVFHCRHMFHKECFPEPNTESSLHFCNICSAKHRGPGSAILEMKK |
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| Protein ID | habu1_s13214_g21010.t2 |
| Definition | - |
>habu1_s13214_g21010.t2 SPVKINQISLDESGEHLGVCSEDGKVQVFGLYTGEEFHETFDCPIKIVAVHPQFVRSHCKQFVTGGNKLLLFEKNWMNRW KYSVLHEGEGPIRNVKWRGNLIAWANNMGVKIFDVIAKQRITNVPRDDISLRPDMYPCSLCWKDNLTLIIGWGNSVKICS VKERHASEIRDLPSRYVEIVSQFNTEFYISGIAPLCDQLVILSFVKEISEKMERECYARPRLDIIQPFPESCEEISSDAL TVRCFQENECRDYCLEYSEGESLFYIVSPSDVVVAKERDQDDHIEWLLEKKKYEEALMAAEISQKTIKKHKIQDIGLAYI NHLLEIGDYDLAARKCQKILGKNTNLWECEVYRFKEIGQLKAISHYLPRQDSILKPFVYEMVLHEFLESDYEGFATLIKE WPGNLYNNPIIVHAVLDHLKRDPQNRTLLKTLAELYTYDQRYRKALEIYLTLRHKDVFQLIHKHNLFSSIRDKIVLLMEF DSEKAVDMFLDNEDKISIDKVVEELKDRPELQHVYLHKLFKRDHHKGQKYHEKQISLYAEYDRPNLLPFLKNSTHCPLEK ALEICQQRFFVEETVYLLSRMGNSRSALKMIMEELNDVDKAIEFAKEQDDAELWEDLILYSIDKPPFITGLLNNIGTHVD PILLIHRIKESMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMRGVLVDEENICEICLSPILPTD ASKSFSVIVFHCRHMFHKECFPEPNTDLQVTVLR |
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