Gene
| Gene Model ID | habu1_s1341_g04762 |
|---|---|
| Locus | habu1_scaffold1341 : 523979 ... 586074 : + |
| To GenomeBrowser | habu1_scaffold1341:523979..586074 |
| Genes list of scaffold | habu1_scaffold1341 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lim domain-binding protein 1 isoform x1 | GO:0000790 GO:0000972 GO:0001102 GO:0001158 GO:0001702 GO:0001942 GO:0003682 GO:0003712 GO:0005667 GO:0009948 GO:0010669 GO:0016055 GO:0019899 GO:0021702 GO:0022607 GO:0030274 GO:0032784 GO:0035019 GO:0042803 GO:0043621 GO:0043973 GO:0045449 GO:0045647 GO:0045785 GO:0045892 GO:0045944 GO:0046985 GO:0060319 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1341_g04762.t2 | 1 | 1 | LIM_bind | 123 | 326 | 0.0 | 238.5 | 0.0 | 0.0 | 237.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1341_g04762.t2 | gi|543732027|ref|XP_005507051.1| | PREDICTED: LIM domain-binding protein 1 isoform X1 [Columba livia] | 0.0 |
| habu1_s1341_g04762.t2 | gi|530591598|ref|XP_005289445.1| | PREDICTED: LIM domain-binding protein 1 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s1341_g04762.t2 | gi|625212249|ref|XP_007646853.1| | PREDICTED: LIM domain-binding protein 1 isoform X1 [Cricetulus griseus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 11.7 |
| Venom grand-1 | 20.2 |
| Pit, infrared sensing | 14.7 |
| Nose | 13.9 |
| Brain-1 | 15.6 |
| Eye | 16.3 |
| fetal fibroblast | 17.8 |
| venom gland-2 | 20.2 |
| Brain-2 | 13.0 |
| Spleen | 13.4 |
| Lung | 18.3 |
| Liver | 8.9 |
| Kidney | 12.7 |
| Pancreas | 14.5 |
| Small intestine | 9.1 |
| Large intestine | 13.2 |
| Stomach | 12.6 |
| heart | 14.1 |
| ovary | 26.9 |
| cheek muscle | 8.4 |
Transcript
| Transcript ID | habu1_s1341_g04762.t1 |
|---|---|
| Definition | - |
>habu1_s1341_g04762.t1 acctttgctgcgccaggccgggcatgtgaagatgtcagtaggctgtgcatgcccaggctgttcctctaagtcattcaagc tgtactctccaaaggagcccccaaacggcaacgccttcaccccctttcactcaggcactatgctggatcgagatgtggga ccaactcctatgtatccaccaacatacctggagccagggattgggagacacacaccatatggaaaccagactgactacag aatatttgaactcaataagcggctgcaaaactggacagaggaatgtgacaatctgtggtgggatgccttcaccactgagt tttttgaggatgatgccatgttaacaatcactttctgtctggaagatggaccaaagagatacacaatcggccgtacccta attcctcgctacttccgcagtatctttgaggggggcgctactgagctgtattatgttctgaagcacccaaaggaatcctt ccataacaactttgtttcacttgattgtgatcagtgtactatggtcactcagcatggcaagcctatgttcacccaggtgt ctgtggagggccgcctctacttggaattcatgtttgatgacatgatgaggataaagacatggcacttcagtgtccggcag catcgggagcttattccccgtagcatccttgctatgcatgcgcaagatccccagatgttggaccagttgtctaaaaatat tactcgatgtggactttcaaactccacactcaactacctccgactgtgtgtaatcctagaaccaatgcaggagttgatgt ctcgacacaagacctacagtctcagtcctcgggattgcctcaagacgtgcttattccagaagtggcaacgtatggtggcg ccacctgctgaacctgcacgtcagcagcctagtaagcgccggaaaaggaagatgtctggaggtagcaccatgagttccgg cggaggcaataccaacaatagcaacagcaaaaagaagagcccagccagcacctttgccctctccagtcaggtacctgatg tgatggtggtgggcgagccaaccctgatgggtggtgagtttggcgacgaagatgagcgccttatcactcgactggagaac acacagtttgacgctgccaatggcattgatgatgaggacagcttcaacaactctcccgcgttgggcgccaacagtccctg gaacagcaagcccccttccagtcaggagagcaagtctgagaatccaacgtcgcaagcatcacaataaagccccccaaaca gtgcccagccgggcctatacttgacttggctggtgtcccatggactgagtcgaaaccattctacctggacaattgtgaag aagagtggctggccaacaaggtatcaaggcctatgagcactgcagcgcctgcctgcctacagttaacctggccacgattc cctgctgtctgcactcttggctgtcccctttagggcagaattggaacagtgggcttttagtcccagcagaattttaattc cttcttccctgtcaatgcatccagcgccctagataccacaagctacactgttagggggtggtattcatagcagtccctta gagcctccaaaatttggtggatcagcatgaagtaccttgggaggtcacaggactgagtacttaagatgggcaggaaaaat ctggtctaagcccccttctatcattcagtttcatataaggggcatcaagaaggttccattttagcaggagagtcttagag acttgtggacaatgtcatgactcaaattggtgcagctatgatttttatgggttgaattttaagcagttcatcttgactgt cttagagctggcagagcagtaattctgctttgcctgaagaacccagaaaaccaatatggcaggagattatatggggtttt aaattttctggaatgcattattaaaatattctgcagttacctggaagggcacttgtccttttggtcatatccttaggcat gggctgttttgtcccaacctgctcttaaaggaaattgcagtcctcgtacataccccgccctcagtattttgggctttttt aaagaaataaaataaaattgtaagtttaaaaaaaaaaatctgccctccctccctatttcccccaatcctgatttttgtac aggcttgtctactaattgggagtcttagtttttgtatacagttctgagagcttcaaaccaaggagagactttgcaaactt cctttatacactcctttgaggacagcatggctgccccactccccccctcccgtgtaatttgtgtgtgctgctgttcctgc tccaccctcccctaccatatccctcccttttcaaatttgtgtaccttgtgcttgtatatttctgcactgtatgctgtgtg tatgatgctgttcttttcactgtgttctcactaaggcagccgctaccattaccagtggtagtgggggaggagttgattgt gatgggcgtccttcttgggaggcagttcagttcagagggcactgttaccaatttacagcagtgcagaaccacaggaatgg ggctgtggcatctggggaagcaatagacccacattttgcaaagggagtgtacttgtttcttctctttatggaacggtctc taggaaaccattgcccagccagacacgtccatttttatttgaagtgctggtactaaatcccagaggtagcaaatccacct acttacctttctaccttccaaagttcttccttaaagcctaggtttatcctgtgcatcttggagagagaaaaaaatgcttt aattatgtcacagaggcctcaaaattgctgtgagtgaggcatgattttccatttttgagaagagtgcaaaaataagatat tttggccacctcatggcccagactaattgtgaaggtgattgcatttagagagacaaaggctgcactgtcatggcacaata ctctttaacctaacttaggctatttcttcaagatgatttctatctgcaaagattttttttccccctttgcagcattattg tcatcagtttgcctagagctgctagttttgaccatgatttgtcttaacgctgtgagaagaatttcctttcaagtcatgct ctggaatcctagatattctctactctgatggagcccagttggatgaacctgagatatattcatggcggtttggtcacttt tgtattactgggcccaggtccttccccgtgggcaggtaattatagcagctagtagtgtaatttacaagggattgggtttt tttctgtttcgtttcctacttcaaaataagaatgtcacgttctctgctgctgtggctcagcatgtagtgatgacgtttac tcttgtcagctctctccaccttgtccctttccacttccctagggcactgtaaagcttttttttttttttgcatagtttgt gccatttatggtcatgtatggtaccaataaaacaacttttcggtttggtgctc |
|
| Transcript ID | habu1_s1341_g04762.t2 |
| Definition | - |
>habu1_s1341_g04762.t2 actaaaccggttgtaagtcgagaactacccaaccggtcgtaagtcgaggactttccctgcctgggagcgccgcgcatgcg tggttccgccccctgcgccggccgaggcgtagctggcaagcggcagagaggagcaggccgaccaccagctggcccagccc aagggagcgcccgcgggcagagatgttctgagtttccgtcctgcgtcctcccaccttttccctgccccgccacatctgca ccgctccggcagttctcctcaggctgttcctctaagtcattcaagctgtactctccaaaggagcccccaaacggcaacgc cttcaccccctttcactcaggcactatgctggatcgagatgtgggaccaactcctatgtatccaccaacatacctggagc cagggattgggagacacacaccatatggaaaccagactgactacagaatatttgaactcaataagcggctgcaaaactgg acagaggaatgtgacaatctgtggtgggatgccttcaccactgagttttttgaggatgatgccatgttaacaatcacttt ctgtctggaagatggaccaaagagatacacaatcggccgtaccctaattcctcgctacttccgcagtatctttgaggggg gcgctactgagctgtattatgttctgaagcacccaaaggaatccttccataacaactttgtttcacttgattgtgatcag tgtactatggtcactcagcatggcaagcctatgttcacccaggtgtctgtggagggccgcctctacttggaattcatgtt tgatgacatgatgaggataaagacatggcacttcagtgtccggcagcatcgggagcttattccccgtagcatccttgcta tgcatgcgcaagatccccagatgttggaccagttgtctaaaaatattactcgatgtggactttcaaactccacactcaac tacctccgactgtgtgtaatcctagaaccaatgcaggagttgatgtctcgacacaagacctacagtctcagtcctcggga ttgcctcaagacgtgcttattccagaagtggcaacgtatggtggcgccacctgctgaacctgcacgtcagcagcctagta agcgccggaaaaggaagatgtctggaggtagcaccatgagttccggcggaggcaataccaacaatagcaacagcaaaaag aagagcccagccagcacctttgccctctccagtcaggtacctgatgtgatggtggtgggcgagccaaccctgatgggtgg tgagtttggcgacgaagatgagcgccttatcactcgactggagaacacacagtttgacgctgccaatggcattgatgatg aggacagcttcaacaactctcccgcgttgggcgccaacagtccctggaacagcaagcccccttccagtcaggagagcaag tctgagaatccaacgtcgcaagcatcacaataaagccccccaaacagtgcccagccgggcctatacttgacttggctggt gtcccatggactgagtcgaaaccattctacctggacaattgtgaagaagagtggctggccaacaaggtatcaaggcctat gagcactgcagcgcctgcctgcctacagttaacctggccacgattccctgctgtctgcactcttggctgtcccctttagg gcagaattggaacagtgggcttttagtcccagcagaattttaattccttcttccctgtcaatgcatccagcgccctagat accacaagctacactgttagggggtggtattcatagcagtcccttagagcctccaaaatttggtggatcagcatgaagta ccttgggaggtcacaggactgagtacttaagatgggcaggaaaaatctggtctaagcccccttctatcattcagtttcat ataaggggcatcaagaaggttccattttagcaggagagtcttagagacttgtggacaatgtcatgactcaaattggtgca gctatgatttttatgggttgaattttaagcagttcatcttgactgtcttagagctggcagagcagtaattctgctttgcc tgaagaacccagaaaaccaatatggcaggagattatatggggttttaaattttctggaatgcattattaaaatattctgc agttacctggaagggcacttgtccttttggtcatatccttaggcatgggctgttttgtcccaacctgctcttaaaggaaa ttgcagtcctcgtacataccccgccctcagtattttgggcttttttaaagaaataaaataaaattgtaagtttaaaaaaa aaaatctgccctccctccctatttcccccaatcctgatttttgtacaggcttgtctactaattgggagtcttagtttttg tatacagttctgagagcttcaaaccaaggagagactttgcaaacttcctttatacactcctttgaggacagcatggctgc cccactccccccctcccgtgtaatttgtgtgtgctgctgttcctgctccaccctcccctaccatatccctcccttttcaa atttgtgtaccttgtgcttgtatatttctgcactgtatgctgtgtgtatgatgctgttcttttcactgtgttctcactaa ggcagccgctaccattaccagtggtagtgggggaggagttgattgtgatgggcgtccttcttgggaggcagttcagttca gagggcactgttaccaatttacagcagtgcagaaccacaggaatggggctgtggcatctggggaagcaatagacccacat tttgcaaagggagtgtacttgtttcttctctttatggaacggtctctaggaaaccattgcccagccagacacgtccattt ttatttgaagtgctggtactaaatcccagaggtagcaaatccacctacttacctttctaccttccaaagttcttccttaa agcctaggtttatcctgtgcatcttggagagagaaaaaaatgctttaattatgtcacagaggcctcaaaattgctgtgag tgaggcatgattttccatttttgagaagagtgcaaaaataagatattttggccacctcatggcccagactaattgtgaag gtgattgcatttagagagacaaaggctgcactgtcatggcacaatactctttaacctaacttaggctatttcttcaagat gatttctatctgcaaagattttttttccccctttgcagcattattgtcatcagtttgcctagagctgctagttttgacca tgatttgtcttaacgctgtgagaagaatttcctttcaagtcatgctctggaatcctagatattctctactctgatggagc ccagttggatgaacctgagatatattcatggcggtttggtcacttttgtattactgggcccaggtccttccccgtgggca ggtaattatagcagctagtagtgtaatttacaagggattgggtttttttctgtttcgtttcctacttcaaaataagaatg tcacgttctctgctgctgtggctcagcatgtagtgatgacgtttactcttgtcagctctctccaccttgtccctttccac ttccctagggcactgtaaagcttttttttttttttgcatagtttgtgccatttatggtcatgtatggtaccaataaaaca acttttcggtttggtgctc |
|
Protein
| Protein ID | habu1_s1341_g04762.t1 |
|---|---|
| Definition | - |
>habu1_s1341_g04762.t1 MSVGCACPGCSSKSFKLYSPKEPPNGNAFTPFHSGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQN WTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCD QCTMVTQHGKPMFTQVSVEGRLYLEFMFDDMMRIKTWHFSVRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTL NYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPSKRRKRKMSGGSTMSSGGGNTNNSNSK KKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQES KSENPTSQASQ |
|
| Protein ID | habu1_s1341_g04762.t2 |
| Definition | - |
>habu1_s1341_g04762.t2 MRGSAPCAGRGVAGKRQRGAGRPPAGPAQGSARGQRCSEFPSCVLPPFPCPATSAPLRQFSSGCSSKSFKLYSPKEPPNG NAFTPFHSGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTI TFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVSVEGRLYLEF MFDDMMRIKTWHFSVRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSP RDCLKTCLFQKWQRMVAPPAEPARQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLM GGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ |
|