Gene
| Gene Model ID | habu1_s1344_g04805 |
|---|---|
| Locus | habu1_scaffold1344 : 553784 ... 588147 : + |
| To GenomeBrowser | habu1_scaffold1344:553784..588147 |
| Genes list of scaffold | habu1_scaffold1344 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| internexin neuronal intermediate filament alpha | GO:0005200 GO:0005615 GO:0005654 GO:0005883 GO:0021762 GO:0031965 GO:0036464 GO:0045104 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1344_g04805.t1 | 1 | 1 | Filament_head | 46 | 107 | 1.0e-08 | 35.7 | 2.3e-10 | 2.4e-07 | 31.3 |
| habu1_s1344_g04805.t1 | 1 | 1 | Filament | 108 | 419 | 0.0 | 344.5 | 0.0 | 0.0 | 344.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1344_g04805.t1 | gi|602675390|ref|XP_007443175.1| | PREDICTED: alpha-internexin-like [Python bivittatus] | 0.0 |
| habu1_s1344_g04805.t1 | gi|395502173|ref|XP_003755458.1| | PREDICTED: alpha-internexin [Sarcophilus harrisii] | 0.0 |
| habu1_s1344_g04805.t1 | gi|14249342|ref|NP_116116.1| | alpha-internexin [Homo sapiens] | 0.0 |
| habu1_s1344_g04805.t1 | gi|504134893|ref|XP_004579946.1| | PREDICTED: alpha-internexin [Ochotona princeps] | 0.0 |
| habu1_s1344_g04805.t1 | gi|593750830|ref|XP_007130614.1| | PREDICTED: alpha-internexin [Physeter catodon] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.2 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.2 |
| Nose | 12.4 |
| Brain-1 | 23.1 |
| Eye | 6.0 |
| fetal fibroblast | 0.4 |
| venom gland-2 | 0.1 |
| Brain-2 | 31.1 |
| Spleen | 0.3 |
| Lung | 0.2 |
| Liver | 0.1 |
| Kidney | 0.1 |
| Pancreas | 0.0 |
| Small intestine | 0.1 |
| Large intestine | 0.1 |
| Stomach | 0.1 |
| heart | 0.1 |
| ovary | 0.6 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s1344_g04805.t1 |
|---|---|
| Definition | - |
>habu1_s1344_g04805.t1 ggtcgtaagtcgaggactttccctgcccgggagtgccgcgcatgcgtggttccgccccctgcgccggccgaggcgtagct ggcaagcggcagagatggagcaggccgaccaccagctggcccagcccaagggagtcgaggactaaaccggtcgtaagtcg aggactaaaccggtcgaagatattcggggagccgccccgctactccgcccgtcttggcagttcggccacagccagcagtt accggtctcagtcggtatctcgctgtagcaaccgcgccgtctcgtatcggctggcgcaggcagacaccttggatctcagc caggcaacggcggtgaatgacgaatttcggctgacccgcaccaacgagaaggagcagctccagggactcaacgaccgctt cgccggctacatcgagaaagtgaggcaactggagcagcacaatcgcctcctggaggctgagctgagcgccctgcggcagc gtcacgctgagcccagcggcctggccgagctcttccagaacgagctccgcgagctgagggcccagctggacgagacggag gccgcccgggcgcagggggtgctcgaaagggagcggctggccgaggaagtgcagtgcttacgggcgcactgcgaggagga ggcgcgagccaaggcggaggccgagcaggcgttgcgcgcgcagcagagggaggtggatggcgccaccttggcacgcctgg ctctggagaagaaagtggaggcgctgctcgacgaactggccttcctgcgcaaggtccacgccgaggaggtggccgagctg agcgcctccttgcagccagccccgctggctgccatcgagccggacgccaccaaggccgatctgactgcggcgctgaagga gctgcgctcgcagtacgaagggttggccgccaagaacctgcaggcggccgaggagtggtaccgcgccaagttcgccaatc tcagcgagcaggcggcgcgcaacaacgaggccatccgagccagtcgcgaagagatcggcgagtaccgccgccagctgcaa gcccgcactttagaggtggagagcctgcgcggagccaatgaatctctggagcggcagctccatgagatggaggagcggca taacgccgatgcgctcggcttacaggatactattagccagttagaaagtgatttgagagacacaaagaatgaaatggctc ggcatctgagagaataccaagatttactgaatgtcaaaatggccttggatatagagatagcagcatacaggaagctgttg gagggtgaagagacacgtttcagtacttcaagcatgagcatctcatctctgaatcccctttccaaccctacttactcttt ccaacccaggctctttagttcatctgtagccagcagctccaaaatgtcatcctctttctattttaagaaagatgagaaag aggatgctaaattagcctcaaaaatttcatcaagccaggtaggagacccgtttgctgaaatgatagatgaaaccctaaca tctgctaaaaaaactgaacgaacaaacttggaagaaggaaatgctatcaatcaaaaaatgtaatcactgaccttaaatac agacacacccaagggataataatacagcttaagtctttaaattgcccatacttgaattaaagtacttaatagctcacatc aat |
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Protein
| Protein ID | habu1_s1344_g04805.t1 |
|---|---|
| Definition | - |
>habu1_s1344_g04805.t1 MRGSAPCAGRGVAGKRQRWSRPTTSWPSPRESRTKPVVSRGLNRSKIFGEPPRYSARLGSSATASSYRSQSVSRCSNRAV SYRLAQADTLDLSQATAVNDEFRLTRTNEKEQLQGLNDRFAGYIEKVRQLEQHNRLLEAELSALRQRHAEPSGLAELFQN ELRELRAQLDETEAARAQGVLERERLAEEVQCLRAHCEEEARAKAEAEQALRAQQREVDGATLARLALEKKVEALLDELA FLRKVHAEEVAELSASLQPAPLAAIEPDATKADLTAALKELRSQYEGLAAKNLQAAEEWYRAKFANLSEQAARNNEAIRA SREEIGEYRRQLQARTLEVESLRGANESLERQLHEMEERHNADALGLQDTISQLESDLRDTKNEMARHLREYQDLLNVKM ALDIEIAAYRKLLEGEETRFSTSSMSISSLNPLSNPTYSFQPRLFSSSVASSSKMSSSFYFKKDEKEDAKLASKISSSQV GDPFAEMIDETLTSAKKTERTNLEEGNAINQKM |
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