Gene
| Gene Model ID | habu1_s1344_g04811 |
|---|---|
| Locus | habu1_scaffold1344 : 716444 ... 843152 : + |
| To GenomeBrowser | habu1_scaffold1344:716444..843152 |
| Genes list of scaffold | habu1_scaffold1344 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase neurl1 isoform x2 | EC:6.3.2.19 GO:0004842 GO:0005737 GO:0005886 GO:0006417 GO:0006445 GO:0006513 GO:0007288 GO:0008270 GO:0008285 GO:0014069 GO:0030317 GO:0043065 GO:0043197 GO:0043204 GO:0045183 GO:0045741 GO:0045746 GO:0048170 GO:0051491 GO:0060999 GO:0071230 GO:0090129 GO:0097440 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1344_g04811.t2 | 2 | 1 | Neuralized | 73 | 141 | 0.0 | 160.9 | 1.9e-35 | 7.2e-32 | 109.0 |
| habu1_s1344_g04811.t2 | 2 | 2 | Neuralized | 303 | 370 | 0.0 | 160.9 | 6.3e-17 | 2.3e-13 | 49.7 |
| habu1_s1344_g04811.t2 | 1 | 1 | zf-C3HC4_3 | 528 | 575 | 2.0e-12 | 46.6 | 5.3e-16 | 2.0e-12 | 46.6 |
| habu1_s1344_g04811.t2 | 1 | 1 | zf-C3HC4_2 | 530 | 569 | 4.5e-07 | 29.7 | 5.5e-10 | 2.0e-06 | 27.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1344_g04811.t2 | gi|558152068|ref|XP_006120913.1| | PREDICTED: neuralized-like protein 1A isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s1344_g04811.t2 | gi|530632998|ref|XP_005303553.1| | PREDICTED: E3 ubiquitin-protein ligase NEURL1 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s1344_g04811.t2 | gi|591366123|ref|XP_007057922.1| | PREDICTED: E3 ubiquitin-protein ligase NEURL1 [Chelonia mydas] | 0.0 |
| habu1_s1344_g04811.t2 | gi|733897612|ref|XP_010712960.1| | PREDICTED: E3 ubiquitin-protein ligase NEURL1 isoform X1 [Meleagris gallopavo] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.7 |
| Pit, infrared sensing | 0.3 |
| Nose | 0.2 |
| Brain-1 | 3.0 |
| Eye | 2.3 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.1 |
| Brain-2 | 2.8 |
| Spleen | 0.8 |
| Lung | 0.2 |
| Liver | 0.0 |
| Kidney | 0.8 |
| Pancreas | 1.5 |
| Small intestine | 0.6 |
| Large intestine | 4.2 |
| Stomach | 0.1 |
| heart | 0.0 |
| ovary | 0.0 |
| cheek muscle | 5.9 |
Transcript
| Transcript ID | habu1_s1344_g04811.t1 |
|---|---|
| Definition | - |
>habu1_s1344_g04811.t1 atgttcatgagtatgtatttatggagagttgttcaatctctctcccttctgaggatacatggttctcggctgctgataat gactgcctgcttggagttctgcacctccgtcctgtgaaagagaaagctgcaaggtagccaagccaccttgcgcagtacga tggggggacagctaacgagaagcacaatatacgattccattggtgggccctttcctgcttcctctcatcgatgccaccac aagcaaaagcaatctctacccatctcacagtgtggcactctctctgtcagcccactgcttttccatcctcacaccaaggg gtcacagatcattatggacactactcagaaagtggtcaagcgacaggcaagtttctgcaatgccatcaccttcagcaaca ggccaatagtcatctatgagcaaatcaggcttaagatcacaaagaagcagtgttgttggagtggagctcttcgactggga tttacatccaaggatccctctaggattaatccagaaactctgcccaagtatgcatgcccagatctggtttctcaaactgg attttgggcaaaggcccttccagaagaatttgcaaatgagggaaatatcatagcattctgggtggataaaaagggacgtg tattttatcgtgttaatgattctgctgcaatgttgttcttcaatggggtaaggacaactgaaccattgtgggctttgatt gatgtctatggactcactcgtggagtgcaactattagatagtgaaattattcctcctgattgcctccgtccaagatcctt cacagctatccgccgaccctcattgcgcagagatactgaggatacccgtttatctgtgagcctttgtgatctcaacttgc aggaggacaatatccatgtcatgactgcaatgtgtcctattccacagaattccctcaactctcagcattcccacctcctc ccatctcaacttgaaagcgacctccgcttccatcaactcaggggagcccatattaaaattctggatgaccagactgtggc ccgtctggaccatgctcgagacgagagaactttggtttttaccagcagaccgcttagaatcaatgagacaatatttgtca aaatcaataaatccaacacttcgcgtactgggacactgtcatatggggtaaccacttgtgatcctagcaccctgagaccc agtgaccttccttataacccagagtctttagttgatcgaaaagagttttgggcagtctgtagagtgcttgtgcctctcca gagtggagacatcttgggattcatggtgaattcagaaggagaactgcacttgagtcacaatggagcaagtgcaggcatgc aagtatgtgtggattgttcccaaccattatggatgttctttggtttacatggagcagtgatgcaaattcgtgtcctgggt tctactctcacggctgaacacctgggaccctcagcaccaagctcacccacctcatctcccaattcatcttccattctctg caatgatgtttctgatcctgtcctatgtatatctggttctggcccacttggcagctcacttagtggtacggctccaaact ctccaatcagtatgccagaatcccctctttcctcttccatctcaggaacttggaatgatgagtgtactatctgctatgag aatatggtggatactgtgatttactcctgtggacatatgtgtctgtgttatacatgtgggctcaaactcaagaagatggc taatgcctgttgtcctatctgtagacgttccatcaaggacataatcaaaacctatcgcagcaattaaagttgcatggcag gaaggaatctgaaataattcctgtgattcaatgtcattgacaagaagattttaatttttaaatgctttatttatttattt gtatgtttatgttttcaagacagatataaaagtttgttctattcagtgtgacaattgcatagctgtgaataaagttgatt taggtaatctgtgga |
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| Transcript ID | habu1_s1344_g04811.t2 |
| Definition | - |
>habu1_s1344_g04811.t2 aacgctggaagatttggtgcctccgcaccacgcccgctgccggatggatggccagccgctagctgcctttgatgccatgg ggaacagtttctccagtatcccagcaatgcctaggggcaaccccaaccgcttccacagggtccatcatcaacatctcaaa gattccattggtgggccctttcctgcttcctctcatcgatgccaccacaagcaaaagcaatctctacccatctcacagtg tggcactctctctgtcagcccactgcttttccatcctcacaccaaggggtcacagatcattatggacactactcagaaag tggtcaagcgacaggcaagtttctgcaatgccatcaccttcagcaacaggccaatagtcatctatgagcaaatcaggctt aagatcacaaagaagcagtgttgttggagtggagctcttcgactgggatttacatccaaggatccctctaggattaatcc agaaactctgcccaagtatgcatgcccagatctggtttctcaaactggattttgggcaaaggcccttccagaagaatttg caaatgagggaaatatcatagcattctgggtggataaaaagggacgtgtattttatcgtgttaatgattctgctgcaatg ttgttcttcaatggggtaaggacaactgaaccattgtgggctttgattgatgtctatggactcactcgtggagtgcaact attagatagtgaaattattcctcctgattgcctccgtccaagatccttcacagctatccgccgaccctcattgcgcagag atactgaggatacccgtttatctgtgagcctttgtgatctcaacttgcaggaggacaatatccatgtcatgactgcaatg tgtcctattccacagaattccctcaactctcagcattcccacctcctcccatctcaacttgaaagcgacctccgcttcca tcaactcaggggagcccatattaaaattctggatgaccagactgtggcccgtctggaccatgctcgagacgagagaactt tggtttttaccagcagaccgcttagaatcaatgagacaatatttgtcaaaatcaataaatccaacacttcgcgtactggg acactgtcatatggggtaaccacttgtgatcctagcaccctgagacccagtgaccttccttataacccagagtctttagt tgatcgaaaagagttttgggcagtctgtagagtgcttgtgcctctccagagtggagacatcttgggattcatggtgaatt cagaaggagaactgcacttgagtcacaatggagcaagtgcaggcatgcaagtatgtgtggattgttcccaaccattatgg atgttctttggtttacatggagcagtgatgcaaattcgtgtcctgggttctactctcacggctgaacacctgggaccctc agcaccaagctcacccacctcatctcccaattcatcttccattctctgcaatgatgtttctgatcctgtcctatgtatat ctggttctggcccacttggcagctcacttagtggtacggctccaaactctccaatcagtatgccagaatcccctctttcc tcttccatctcaggaacttggaatgatgagtgtactatctgctatgagaatatggtggatactgtgatttactcctgtgg acatatgtgtctgtgttatacatgtgggctcaaactcaagaagatggctaatgcctgttgtcctatctgtagacgttcca tcaaggacataatcaaaacctatcgcagcaattaaagttgcatggcaggaaggaatctgaaataattcctgtgattcaat gtcattgacaagaagattttaatttttaaatgctttatttatttatttgtatgtttatgttttcaagacagatataaaag tttgttctattcagtgtgacaattgcatagctgtgaataaagttgatttaggtaatctgtgga |
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Protein
| Protein ID | habu1_s1344_g04811.t1 |
|---|---|
| Definition | - |
>habu1_s1344_g04811.t1 MGGQLTRSTIYDSIGGPFPASSHRCHHKQKQSLPISQCGTLSVSPLLFHPHTKGSQIIMDTTQKVVKRQASFCNAITFSN RPIVIYEQIRLKITKKQCCWSGALRLGFTSKDPSRINPETLPKYACPDLVSQTGFWAKALPEEFANEGNIIAFWVDKKGR VFYRVNDSAAMLFFNGVRTTEPLWALIDVYGLTRGVQLLDSEIIPPDCLRPRSFTAIRRPSLRRDTEDTRLSVSLCDLNL QEDNIHVMTAMCPIPQNSLNSQHSHLLPSQLESDLRFHQLRGAHIKILDDQTVARLDHARDERTLVFTSRPLRINETIFV KINKSNTSRTGTLSYGVTTCDPSTLRPSDLPYNPESLVDRKEFWAVCRVLVPLQSGDILGFMVNSEGELHLSHNGASAGM QVCVDCSQPLWMFFGLHGAVMQIRVLGSTLTAEHLGPSAPSSPTSSPNSSSILCNDVSDPVLCISGSGPLGSSLSGTAPN SPISMPESPLSSSISGTWNDECTICYENMVDTVIYSCGHMCLCYTCGLKLKKMANACCPICRRSIKDIIKTYRSN |
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| Protein ID | habu1_s1344_g04811.t2 |
| Definition | - |
>habu1_s1344_g04811.t2 MDGQPLAAFDAMGNSFSSIPAMPRGNPNRFHRVHHQHLKDSIGGPFPASSHRCHHKQKQSLPISQCGTLSVSPLLFHPHT KGSQIIMDTTQKVVKRQASFCNAITFSNRPIVIYEQIRLKITKKQCCWSGALRLGFTSKDPSRINPETLPKYACPDLVSQ TGFWAKALPEEFANEGNIIAFWVDKKGRVFYRVNDSAAMLFFNGVRTTEPLWALIDVYGLTRGVQLLDSEIIPPDCLRPR SFTAIRRPSLRRDTEDTRLSVSLCDLNLQEDNIHVMTAMCPIPQNSLNSQHSHLLPSQLESDLRFHQLRGAHIKILDDQT VARLDHARDERTLVFTSRPLRINETIFVKINKSNTSRTGTLSYGVTTCDPSTLRPSDLPYNPESLVDRKEFWAVCRVLVP LQSGDILGFMVNSEGELHLSHNGASAGMQVCVDCSQPLWMFFGLHGAVMQIRVLGSTLTAEHLGPSAPSSPTSSPNSSSI LCNDVSDPVLCISGSGPLGSSLSGTAPNSPISMPESPLSSSISGTWNDECTICYENMVDTVIYSCGHMCLCYTCGLKLKK MANACCPICRRSIKDIIKTYRSN |
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