Gene
| Gene Model ID | habu1_s1408_g05040 |
|---|---|
| Locus | habu1_scaffold1408 : 1286619 ... 1331204 : + |
| To GenomeBrowser | habu1_scaffold1408:1286619..1331204 |
| Genes list of scaffold | habu1_scaffold1408 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna polymerase ii subunit b1 ctd phosphatase rpap2 isoform x1 | GO:0005634 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1408_g05040.t2 | 1 | 1 | RPAP2_Rtr1 | 71 | 144 | 3.1e-26 | 91.2 | 5.7e-30 | 8.5e-26 | 89.8 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.8 |
| Venom grand-1 | 12.8 |
| Pit, infrared sensing | 9.7 |
| Nose | 11.8 |
| Brain-1 | 9.6 |
| Eye | 9.0 |
| fetal fibroblast | 7.6 |
| venom gland-2 | 13.1 |
| Brain-2 | 7.4 |
| Spleen | 8.0 |
| Lung | 9.2 |
| Liver | 11.3 |
| Kidney | 10.5 |
| Pancreas | 12.7 |
| Small intestine | 8.2 |
| Large intestine | 9.5 |
| Stomach | 8.4 |
| heart | 8.5 |
| ovary | 21.0 |
| cheek muscle | 10.4 |
Transcript
| Transcript ID | habu1_s1408_g05040.t1 |
|---|---|
| Definition | - |
>habu1_s1408_g05040.t1 tcctttcaagctccgcctccccaagctactcccaccgggggtgagaggtcaacgccgaaaaggccccggatgatggcgga agaaacgctgagaagtgccttggatggacgcggatgcttaggaaacaaaccacctttaaaaaatgaagatgctgctgaaa ggaaagcagcacttgaagctgccattaggaaaaaaattgagtatgagcggaaagcactgcaagttgttgaacacctgttg gaagaggacattaccaaagaattctttgtggattgtgggaggcttataacaccttctcactatcaagatgtggtggaaga aagatttatcgtcaagttatgtggctacccactctgtcaaaataagctacagaatgtgccaaaacaaaagtataaaattt ccacaaaaacaaacaaagtatatgatattactgaaagaaagcgtttttgcagcaatttttgttacaaagcatcaaaatac ttcgaaggccaaatatcccaaaccccagtatggcttcgagaagaagaaaggccaccgacgattgagctgctaaagaaaga gtcaagtggctactctgggaaggaaatacaattagtcagtgaaagaattaaagccttagacattgaaaatcctactcctg cagaaatccttcataactctgactcagccggtgaaagcaacagtgatgctgagcaggagtttgtttcttctgttctacaa gagaatctttcaaatacagagaaattggctgggaagcccctcaagggcatccttaaaaaaagccctaccaagagagcaga gcctaagctcttcaccacacttgacaagacttcagcccagccaaacaaaggcacatcagacgttctacaagaagagcacg tttttcctgataatattcaggggggaaaaccttgcctttcccagaacgttcttgaaaaggtacaggtctctgaaaatctt ggaaacaactgtagctgctcccaagtagtgtttctgggcgtgagtcaaaaagggtcagaccaatttaaaaagttacttgc taaatcaaaactctctgtcagaagtccagcagaatccatggcggccaaagatagcttgttaaagagcctctggcagacat ttactgactggagaagtgaggagacactaaagcttctccagggctctcacagaaccaccagtcatctcctgcagcgcacc caggcaaatgaccctgagaaggaagagcttgatgaagatgatttggaaagtgctaatagcagtgaagctgcatcccaaaa gcacacttttaacagcctagatcagtctttgccttcccaggatgccaggacagctgccaaaccgttacctagctttgaaa aaataaaaaaagagagatcacagttggagttaaaggtgagggaattttacaaaggaaagttcactgtcactgaagaggag gatttggcaatgcagtcggaaagggaacagcagaatgggaagtgtcaagacaatgaacagtgggctcccattttgccact tgtagattctaaagctcagcagcagatacggacacggattgtgcttgaaaagctgcaaaaagttttgcctgctgttttgg accctcttaagattcctcttggtgatgtttatagtgaactgagaaatcttgtaaaaacatttaggttgacaaatacaaat ataattcacaaaactccagtgtggaccttaattgccattgtgctgttgtctatatggcatgttgaatatgaccaatttgc caggaaaagatacagagaacattgatagtctgttcaggaagtaaataaatgaagtcagccatcaatacaatcagagggca tcaactacagtttgtcagaaaatatccctgcttttgcacattctcagcaaaataaaggatatacacagttccttgctacc ttgcttgaagaattatgtatcaaaactgaagatctggaaagtctaacaaaaatatttagaagtggctgactccctcactg aataagaagatcatccttcatttctctcttgaacagagattgaattaatgttccaccactggatttatcaaaccactaga aatgtttttgtagtttagtattttaaaaataccaacttaaaaaaacaacaacgataagagcttttattatattgttgctt gttttatttttataaatttaatttcaccatgtcaattcttcaaattgaagaatatctgtgccattttattgttgcatcaa tagaatgtcaaaggacttaatttctcaagaaaatattgtatcgtgatgggaagcccatttttatttatgttcgttatttg agtcctcaaaaaaaccagatgcgttggaatttgaatgccttttcggttttcttaataaaaagacataatttcagtcactt g |
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| Transcript ID | habu1_s1408_g05040.t2 |
| Definition | - |
>habu1_s1408_g05040.t2 tcctttcaagctccgcctccccaagctactcccaccgggggtgagaggtcaacgccgaaaaggccccggatgatggcgga agaaacgctgagaagtgccttggatggacgcggatgcttaggaaacaaaccacctttaaaaaatgaagatgctgctgaaa ggaaagcagcacttgaagctgccattaggaaaaaaattgagtatgagcggaaagcactgcaagttgttgaacacctgttg gaagaggacattaccaaagaattctttgtggattgtgggaggcttataacaccttctcactatcaagatgtggtggaaga aagatttatcgtcaagttatgtggctacccactctgtcaaaataagctacagaatgtgccaaaacaaaagtataaaattt ccacaaaaacaaacaaagtatatgatattactgaaagaaagcgtttttgcagcaatttttgttacaaagcatcaaaatac ttcgaaggccaaatatcccaaaccccagtatggcttcgagaagaagaaaggccaccgacgattgagctgctaaagaaaga gtcaagtggctactctgggaaggaaatacaattagtcagtgaaagaattaaagccttagacattgaaaatcctactcctg cagaaatccttcataactctgactcagccggtgaaagcaacagtgatgctgagcaggagtttgtttcttctgttctacaa gagaatctttcaaatacagagaaattggctgggaagcccctcaagggcatccttaaaaaaagccctaccaagagagcaga gcctaagctcttcaccacacttgacaagacttcagcccagccaaacaaaggcacatcagacgttctacaagaagagcacg tttttcctgataatattcaggggggaaaaccttgcctttcccagaacgttcttgaaaaggtacaggtctctgaaaatctt ggaaacaactgtagctgctcccaagtagtgtttctgggcgtgagtcaaaaagggtcagaccaatttaaaaagttacttgc taaatcaaaactctctgtcagaagtccagcagaatccatggcggccaaagatagcttgttaaagagcctctggcagacat ttactgactggagaagtgaggagacactaaagcttctccagggctctcacagaaccaccagtcatctcctgcagcgcacc caggcaaatgaccctgagaaggaagagcttgatgaagatgatttggaaagtgctaatagcagtgaagctgcatcccaaaa gcacacttttaacagcctagatcagtctttgccttcccaggatgccaggacagctgccaaaccgttacctagctttgaaa aaataaaaaaagagagatcacagttggagttaaaggtgagggaattttacaaaggaaagttcactgtcactgaagaggag gatttggcaatgcagtcggaaagggaacagcagaatgggaagtgtcaagacaatgaacagtgggctcccattttgccact tgtagattctaaagctcagcagcagatacggacacggattgtgcttgaaaagctgcaaaaagttttgcctgctgttttgg accctcttaagattcctcttggtgatgtttatagtgaactgagaaatcttgtaaaaacatttaggttgacaaatacaaat ataattcacaaaactccagtgtggaccttaattgccattgtgctgttgtctattttgtcagaaaatatccctgcttttgc acattctcagcaaaataaaggatatacacagttccttgctaccttgcttgaagaattatgtatcaaaactgaagatctgg aaagtctaacaaaaatatttagaagtggctgactccctcactgaataagaagatcatccttcatttctctcttgaacaga gattgaattaatgttccaccactggatttatcaaaccactagaaatgtttttgtagtttagtattttaaaaataccaact taaaaaaacaacaacgataagagcttttattatattgttgcttgttttatttttataaatttaatttcaccatgtcaatt cttcaaattgaagaatatctgtgccattttattgttgcatcaatagaatgtcaaaggacttaatttctcaagaaaatatt gtatcgtgatgggaagcccatttttatttatgttcgttatttgagtcctcaaaaaaaccagatgcgttggaatttgaatg ccttttcggttttcttaataaaaagacataatttcagtcacttg |
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Protein
| Protein ID | habu1_s1408_g05040.t1 |
|---|---|
| Definition | - |
>habu1_s1408_g05040.t1 MMAEETLRSALDGRGCLGNKPPLKNEDAAERKAALEAAIRKKIEYERKALQVVEHLLEEDITKEFFVDCGRLITPSHYQD VVEERFIVKLCGYPLCQNKLQNVPKQKYKISTKTNKVYDITERKRFCSNFCYKASKYFEGQISQTPVWLREEERPPTIEL LKKESSGYSGKEIQLVSERIKALDIENPTPAEILHNSDSAGESNSDAEQEFVSSVLQENLSNTEKLAGKPLKGILKKSPT KRAEPKLFTTLDKTSAQPNKGTSDVLQEEHVFPDNIQGGKPCLSQNVLEKVQVSENLGNNCSCSQVVFLGVSQKGSDQFK KLLAKSKLSVRSPAESMAAKDSLLKSLWQTFTDWRSEETLKLLQGSHRTTSHLLQRTQANDPEKEELDEDDLESANSSEA ASQKHTFNSLDQSLPSQDARTAAKPLPSFEKIKKERSQLELKVREFYKGKFTVTEEEDLAMQSEREQQNGKCQDNEQWAP ILPLVDSKAQQQIRTRIVLEKLQKVLPAVLDPLKIPLGDVYSELRNLVKTFRLTNTNIIHKTPVWTLIAIVLLSIWHVEY DQFARKRYREH |
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| Protein ID | habu1_s1408_g05040.t2 |
| Definition | - |
>habu1_s1408_g05040.t2 MMAEETLRSALDGRGCLGNKPPLKNEDAAERKAALEAAIRKKIEYERKALQVVEHLLEEDITKEFFVDCGRLITPSHYQD VVEERFIVKLCGYPLCQNKLQNVPKQKYKISTKTNKVYDITERKRFCSNFCYKASKYFEGQISQTPVWLREEERPPTIEL LKKESSGYSGKEIQLVSERIKALDIENPTPAEILHNSDSAGESNSDAEQEFVSSVLQENLSNTEKLAGKPLKGILKKSPT KRAEPKLFTTLDKTSAQPNKGTSDVLQEEHVFPDNIQGGKPCLSQNVLEKVQVSENLGNNCSCSQVVFLGVSQKGSDQFK KLLAKSKLSVRSPAESMAAKDSLLKSLWQTFTDWRSEETLKLLQGSHRTTSHLLQRTQANDPEKEELDEDDLESANSSEA ASQKHTFNSLDQSLPSQDARTAAKPLPSFEKIKKERSQLELKVREFYKGKFTVTEEEDLAMQSEREQQNGKCQDNEQWAP ILPLVDSKAQQQIRTRIVLEKLQKVLPAVLDPLKIPLGDVYSELRNLVKTFRLTNTNIIHKTPVWTLIAIVLLSILSENI PAFAHSQQNKGYTQFLATLLEELCIKTEDLESLTKIFRSG |
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