Gene
| Gene Model ID | habu1_s1408_g05047 |
|---|---|
| Locus | habu1_scaffold1408 : 1686298 ... 1704124 : - |
| To GenomeBrowser | habu1_scaffold1408:1686298..1704124 |
| Genes list of scaffold | habu1_scaffold1408 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| palmdelphin isoform x1 | GO:0008360 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1408_g05047.t1 | 2 | 1 | Paralemmin | 24 | 211 | 4.4e-26 | 91.9 | 8.1e-15 | 4.0e-11 | 42.9 |
| habu1_s1408_g05047.t1 | 2 | 2 | Paralemmin | 357 | 406 | 4.4e-26 | 91.9 | 6.3e-18 | 3.1e-14 | 53.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1408_g05047.t1 | gi|602630248|ref|XP_007422042.1| | PREDICTED: palmdelphin isoform X1 [Python bivittatus] | 0.0 |
| habu1_s1408_g05047.t1 | gi|602630252|ref|XP_007422044.1| | PREDICTED: palmdelphin isoform X3 [Python bivittatus] | 0.0 |
| habu1_s1408_g05047.t1 | gi|602630250|ref|XP_007422043.1| | PREDICTED: palmdelphin isoform X2 [Python bivittatus] | 0.0 |
| habu1_s1408_g05047.t1 | gi|327270723|ref|XP_003220138.1| | PREDICTED: palmdelphin [Anolis carolinensis] | 0.0 |
| habu1_s1408_g05047.t1 | gi|591375982|ref|XP_007062664.1| | PREDICTED: palmdelphin [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 10.0 |
| Venom grand-1 | 2.9 |
| Pit, infrared sensing | 8.8 |
| Nose | 9.4 |
| Brain-1 | 1.4 |
| Eye | 13.2 |
| fetal fibroblast | 3.4 |
| venom gland-2 | 0.9 |
| Brain-2 | 0.5 |
| Spleen | 1.7 |
| Lung | 9.5 |
| Liver | 17.6 |
| Kidney | 1.5 |
| Pancreas | 2.9 |
| Small intestine | 10.2 |
| Large intestine | 9.3 |
| Stomach | 12.6 |
| heart | 18.1 |
| ovary | 62.1 |
| cheek muscle | 5.8 |
Transcript
| Transcript ID | habu1_s1408_g05047.t1 |
|---|---|
| Definition | - |
>habu1_s1408_g05047.t1 aaaaaagctctgcgtgagaaatggctctgggatggattaagcacccttactccagaagaacaaaaagaaatgcaaaacca acatcgagaagatcaacaccgaattaagaaactggaacaaaatattctcaggcttgagcaagaaattgaggctcttgaga aagaagaattgacaatttcggtaaaagaaaaagccattttgaagaaactgaaatctgttgaaaggaccacggaagatatt ataaagtccgtgaaagtggaaagagtagagactacagaagagccagctgactatatatatgccaacataccagaccttcc aaaacctttcagaccttctgcacttaaaaaggcaggccctctgcaaacagacgatgaagaagaaaatcgaaaagcattgt ttgctatggaaattaaagtaaaaaaagacatgaagactggggagagtacagttttgtcaacaataccccttccttcagaa gaatttaaaggagcaggagtcaaagtgtatgacgatggcagaaagtctgtctatgcagtgtgtgccaatgggagcataaa gaatgatgatgtggatgaccttgccccaattgaagtggaggatatcttacgacaagcaactgagaaacaatccaagtctc ccactgaatatcatgagccagtatatgccaacccgttttgcagacccagaacgcctcaaaagaataaattcatccaagag gcaaatggtggaaaagataatatccagaataagatcagccaccttgacaatttttctaatgaacttgtcgataaggataa atggcatgatattaaaaaagatggtctagatacttcaaagagctgccagcaaaactctcattatccagttagtcaacagt taggaaggcccctacaggttagtcctcaaaataagctagtatcttctgtccaaagagaagctacacaagaaactgctcag ccttatcaaaagataaaggagtaccaagataagaagatcagaaactcttctccggtaacactagagagtgaggataatta taccgtggtccaagcgatgccatgttatgtggatgatacagaagaaccagttacaatgattttcatgggataccaacatg tggatgatgatgaactaaataaaaaaatctgtggatatgatgggattatccatgcggaacttgttgtcatcagtgatgac agtgaagatgaagaaagaaaaattgagacacctctttatcatccggtgggtccttatagccaggtctatcagccatccaa tcagacgtgtgcagtttcacagacaaaaactattggagacaacataaacaagccactttacaaaaattccatgtcactga aagaacaggaagaaagcttgagctgttctacctttaatggtcaaattgatggccacttagcaagtgatggaacagaagaa ccttccttaacagctctgagaatgagaatggcaaaactggggaaaaaagtgatttaaacagctgcagtgatataatactc aaagtctggcagtttaacaaaagcaaaagaagaattttctatgttttggacctgggtagcttttatttactcaacaatac atccataagaataatggcactttacaggaaaatgaatgtttgctagtcctgatatatggataccctgatccataaataag tattgttaaaacagtgtg |
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Protein
| Protein ID | habu1_s1408_g05047.t1 |
|---|---|
| Definition | - |
>habu1_s1408_g05047.t1 KKALREKWLWDGLSTLTPEEQKEMQNQHREDQHRIKKLEQNILRLEQEIEALEKEELTISVKEKAILKKLKSVERTTEDI IKSVKVERVETTEEPADYIYANIPDLPKPFRPSALKKAGPLQTDDEEENRKALFAMEIKVKKDMKTGESTVLSTIPLPSE EFKGAGVKVYDDGRKSVYAVCANGSIKNDDVDDLAPIEVEDILRQATEKQSKSPTEYHEPVYANPFCRPRTPQKNKFIQE ANGGKDNIQNKISHLDNFSNELVDKDKWHDIKKDGLDTSKSCQQNSHYPVSQQLGRPLQVSPQNKLVSSVQREATQETAQ PYQKIKEYQDKKIRNSSPVTLESEDNYTVVQAMPCYVDDTEEPVTMIFMGYQHVDDDELNKKICGYDGIIHAELVVISDD SEDEERKIETPLYHPVGPYSQVYQPSNQTCAVSQTKTIGDNINKPLYKNSMSLKEQEESLSCSTFNGQIDGHLASDGTEE PSLTALRMRMAKLGKKVI |
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