Gene
| Gene Model ID | habu1_s1419_g05087 |
|---|---|
| Locus | habu1_scaffold1419 : 86126 ... 109215 : - |
| To GenomeBrowser | habu1_scaffold1419:86126..109215 |
| Genes list of scaffold | habu1_scaffold1419 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: type i cytoskeletal 17 | GO:0005198 GO:0005882 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1419_g05087.t1 | 2 | 1 | Filament | 30 | 77 | 0.0 | 220.3 | 4.6e-07 | 0.00057 | 19.4 |
| habu1_s1419_g05087.t1 | 2 | 2 | Filament | 78 | 299 | 0.0 | 220.3 | 0.0 | 0.0 | 204.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1419_g05087.t1 | gi|602642666|ref|XP_007428118.1| | PREDICTED: LOW QUALITY PROTEIN: keratin, type I cytoskeletal 17 [Python bivittatus] | 0.0 |
| habu1_s1419_g05087.t1 | gi|637315003|ref|XP_008111602.1| | PREDICTED: keratin, type I cytoskeletal 17-like isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s1419_g05087.t1 | gi|637314999|ref|XP_008111601.1| | PREDICTED: keratin, type I cytoskeletal 17-like isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s1419_g05087.t1 | gi|564251133|ref|XP_006264627.1| | PREDICTED: keratin, type I cytoskeletal 14-like [Alligator mississippiensis] | 0.0 |
| habu1_s1419_g05087.t1 | gi|557319372|ref|XP_006032857.1| | PREDICTED: keratin, type I cytoskeletal 42-like [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 0.1 |
| Nose | 0.8 |
| Brain-1 | 0.2 |
| Eye | 1.3 |
| fetal fibroblast | 0.2 |
| venom gland-2 | 0.3 |
| Brain-2 | 0.2 |
| Spleen | 0.2 |
| Lung | 2.9 |
| Liver | 0.0 |
| Kidney | 1.4 |
| Pancreas | 0.4 |
| Small intestine | 0.0 |
| Large intestine | 0.4 |
| Stomach | 3.7 |
| heart | 0.1 |
| ovary | 0.1 |
| cheek muscle | 0.3 |
Transcript
| Transcript ID | habu1_s1419_g05087.t1 |
|---|---|
| Definition | - |
>habu1_s1419_g05087.t1 gggcgccggaggttttttctagaccactgccaccaggaactgaggtcactgatgcttccgcggccctctggaggctggat ctggctgccagagggccatgcaagtgtcccctggcctcacttctgggcagcagcggcctggaaaaggcctcagaagcccg aatctggtctccggaggtatgcgtaaatatcctccagtctcagatctgggcagcagcagcctggaaaaagcctccaatgc ccggttccagcctccggatcttttcaaggtgctgtcccttgagaaatctaacatgcaattggagcagaacatccaagagt tttacacaaaacaaacatcaactggtacccatgatatgagtgcctatttcaatgccatgacccaaatgaagtccgagata acagatataagactggaatctgaggtagccatgcgcctgtctttggaaggagaccttgggggattgcgaaaggccctaga agaattgaatgcaagtcgagctagcttgcaggtacaagctgacaatctccaacaggagttggcctgtctcaaaagaaacc acaaggaggaggtggcttctctccaggggcatctagggggcactgtcaatgtggaggttgactccatgcctggcactgac ttacaaaaagtcctgggtgaggtccgtgaccagtatgagggtgtcatggagaagaaccgccaggaagctgaagctttgca tcaatcccagtgtgatgcacttaatcaggaggtttctgtcagcactgaagctctacagagtgctcagatgaagatggtgg agttgaaacggctggcccaggctttggagattgagctacagtctctttggagcatgaaagaagcccttgaggggaccctg gctgaggtggaatcccattatgggttggaattatcacagttacaaaatcttgtggctgcccgggaggcagagctgctgca actgaagtcggatgcccagaaccaagctgaggattacaagcgactgatggatattaaaaacagactggaacaggagatag caacctaccagtgtcttcttgaagggtctgaatctgaaccactgactactccagaaccttctgtaagccgacgagtgaag actgtcattgaagaactggtggatggcaaggtggtgtcatcccgcatggaggaggtggagcaccagctttgaaagatgcg gccttccctgtagcagttttgtcagcacaatgatggtggtgatgatgaagaagaggggaagggaatagaagctctgtatg aggattgggttttttttttttgggcctgcaaataaatgagcctttcattttttgccta |
|
Protein
| Protein ID | habu1_s1419_g05087.t1 |
|---|---|
| Definition | - |
>habu1_s1419_g05087.t1 MRKYPPVSDLGSSSLEKASNARFQPPDLFKVLSLEKSNMQLEQNIQEFYTKQTSTGTHDMSAYFNAMTQMKSEITDIRLE SEVAMRLSLEGDLGGLRKALEELNASRASLQVQADNLQQELACLKRNHKEEVASLQGHLGGTVNVEVDSMPGTDLQKVLG EVRDQYEGVMEKNRQEAEALHQSQCDALNQEVSVSTEALQSAQMKMVELKRLAQALEIELQSLWSMKEALEGTLAEVESH YGLELSQLQNLVAAREAELLQLKSDAQNQAEDYKRLMDIKNRLEQEIATYQCLLEGSESEPLTTPEPSVSRRVKTVIEEL VDGKVVSSRMEEVEHQL |
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