Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s1426_g05099
Locus habu1_scaffold1426 : 26546 ... 36275 : +
To GenomeBrowser habu1_scaffold1426:26546..36275
Genes list of scaffold habu1_scaffold1426

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s1426_g05099.t1 1 1 Solute_trans_a 66 296 2.7e-32 112.1 2.4e-36 3.5e-32 111.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s1426_g05099.t1 gi|602644647|ref|XP_007428774.1| PREDICTED: organic solute transporter subunit alpha-like [Python bivittatus] 0.0
habu1_s1426_g05099.t1 gi|637341562|ref|XP_008116574.1| PREDICTED: organic solute transporter subunit alpha-like, partial [Anolis carolinensis] 0.0
habu1_s1426_g05099.t1 gi|742116700|ref|XP_010873936.1| PREDICTED: organic solute transporter subunit alpha-like [Esox lucius] 0.0
habu1_s1426_g05099.t1 gi|657566818|ref|XP_008286767.1| PREDICTED: organic solute transporter subunit alpha-like [Stegastes partitus] 0.0
habu1_s1426_g05099.t1 gi|734635632|ref|XP_010746414.1| PREDICTED: organic solute transporter subunit alpha-like [Larimichthys crocea] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 0.0
Venom grand-1 0.0
Pit, infrared sensing 0.0
Nose 0.0
Brain-1 0.1
Eye 0.0
fetal fibroblast 0.1
venom gland-2 0.0
Brain-2 0.1
Spleen 0.1
Lung 0.0
Liver 0.0
Kidney 0.4
Pancreas 0.3
Small intestine 3.4
Large intestine 0.1
Stomach 0.0
heart 0.1
ovary 0.0
cheek muscle 0.0

Transcript
Transcript IDhabu1_s1426_g05099.t1
Definition-
>habu1_s1426_g05099.t1
gaaggcttgaagaaatgtcattatttaaatcttgagttagtcttggtggtgaagaagtattttaagtatttgaaggggat
ccatggtgaagaaaaggttgagaaccgctgctctagaggaaactccaagcttgatataagtgtattctactacagattca
tactgctaaaagattaggactgtaaccgttttttaatctatcggatgcattcaggaattcatggcaggtgaagaaagctg
gacttggccctgttgccaagacgcccatcttaccctgtgtcaatgattaattcagtgactaatgatgagaaaggaggaag
tcattggctggggagtggtacctgtcccggtgaaatgaaaatggcgcgtgacccaaactgctcccttatcagcgatcagt
tgcctctgtcatccgagatcttccaagttatcaaggctcagatctggattttcttaatcccagtattcctgggtcttctg
caagttggtctatttctggaacaaacaggcttcttcttacgacatggcaagagttcccatcgcaccagtgtcttactttg
gatcctgggagtttatccggtattcagcctcacctccctcatctgtttgtacatccctcgagcttcctttgtctgtaact
ttgtggcttccatataccactccatcaccctctggaagttccttgcattgatccgggacttctttgggggctcagaacgg
atggtccagcaactggcagggcagcacgtttctccgaacccttttccatgctgctgctgctgttgccttcctgagattgc
tgccaatcgagcaaacttgcgatgtatgactgtggccgtgtatcagctctccctcatccggaccatcctcttcttcatca
cccttatcctctggactgatgacgaatatgactacggcgctgtgggctacaccaatcccaattcctacatcaatatcatc
atagccatctccaccttcctctccttctatggctatttgctcttttacaaggccaccaagccggccctcgagggctacaa
cctgcgctacaagtttgtctgcatcattttggtccttgtcctttgcgggctgcagagtggaatcgtggaaacgatgggag
ccttaggtgccattccttgcagcccttctctctcaactgttacccgctcccaaatgatctactactatgctttggccatt
gagatgttccttattggcatatttgctcattattctttccgaagagttgaaccctccatggaagctcagcaggtcatcca
ccatcaagcctcccagacccaggagggcccatctggtcgtggtagtcctgctgatggtgtatctgtggagggaacaaacc
ctggctacctctgtgatgaggctttctgtacaattgaacattctcccctggaccgctttgatttcattgtaaaggagcct
gcgaacagacagcagcaaaattggggacttggctgccagagaggagctctgaagacagaaggacttaggttaaacctaca
acaacctggaactgaagcatcaagtgaaatccaaattcaatcccacgttagcaaaatggaagcaaatggagcctctgccg
tatagccaccatctttagaggctggagacacagggacagctgaattcagaagtatgcataatgtcaaggcatacagacta
gtgtggagggatactgaactccaggtatgaccaggcaagcatgtgcatctgtgtggagatatgcccagaaatataatatt
gtgggagatttcagcgcttccgtattaggtggagaacctttgttctaaccatggctaaactgcctcaggggtggattgtg
aagacatgttgggaaaaaagagccattgttcttttcctctgtaacctctctatacttctccttttcctcttactctttcc
ggaagcctaacttattttcttgtgaagaatttttcaagtggcataggaaattaaaggccgttcttgttcaacattgt

Protein
Protein IDhabu1_s1426_g05099.t1
Definition-
>habu1_s1426_g05099.t1
MKMARDPNCSLISDQLPLSSEIFQVIKAQIWIFLIPVFLGLLQVGLFLEQTGFFLRHGKSSHRTSVLLWILGVYPVFSLT
SLICLYIPRASFVCNFVASIYHSITLWKFLALIRDFFGGSERMVQQLAGQHVSPNPFPCCCCCCLPEIAANRANLRCMTV
AVYQLSLIRTILFFITLILWTDDEYDYGAVGYTNPNSYINIIIAISTFLSFYGYLLFYKATKPALEGYNLRYKFVCIILV
LVLCGLQSGIVETMGALGAIPCSPSLSTVTRSQMIYYYALAIEMFLIGIFAHYSFRRVEPSMEAQQVIHHQASQTQEGPS
GRGSPADGVSVEGTNPGYLCDEAFCTIEHSPLDRFDFIVKEPANRQQQNWGLGCQRGALKTEGLRLNLQQPGTEASSEIQ
IQSHVSKMEANGASAV

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