Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s1426_g05116
Locus habu1_scaffold1426 : 546929 ... 554568 : -
To GenomeBrowser habu1_scaffold1426:546929..554568
Genes list of scaffold habu1_scaffold1426

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s1426_g05116.t1 gi|602630718|ref|XP_007422272.1| PREDICTED: proSAAS [Python bivittatus] 0.0
habu1_s1426_g05116.t1 gi|637255115|ref|XP_008120990.1| PREDICTED: proSAAS [Anolis carolinensis] 0.0
habu1_s1426_g05116.t1 gi|557016320|ref|XP_006008596.1| PREDICTED: proSAAS isoform X1 [Latimeria chalumnae] 1.0e-24
habu1_s1426_g05116.t1 gi|557016322|ref|XP_006008597.1| PREDICTED: proSAAS isoform X2 [Latimeria chalumnae] 4.0e-21
habu1_s1426_g05116.t1 gi|597763947|ref|XP_007245904.1| PREDICTED: uncharacterized protein LOC103032656 [Astyanax mexicanus] 2.0e-11

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 2.5
Venom grand-1 0.5
Pit, infrared sensing 5.9
Nose 12.3
Brain-1 85.3
Eye 37.7
fetal fibroblast 4.2
venom gland-2 0.3
Brain-2 111.6
Spleen 15.0
Lung 1.7
Liver 0.0
Kidney 1.7
Pancreas 1.7
Small intestine 1.6
Large intestine 3.5
Stomach 0.9
heart 5.3
ovary 1.5
cheek muscle 1.2

Transcript
Transcript IDhabu1_s1426_g05116.t1
Definition-
>habu1_s1426_g05116.t1
cgggcagcctctacctcccgaagggactcgggagcgatgggcccggcgctgctgcttgcgctgctttcgagcctcggagc
cgccaagcctctgcccaccacaggcagctcccatggagggatgaatcacaacctgtcagggggggtccggcgggtgcgcc
gtgagcttcagggggcaccatatgaggctgttgagaccgccttggccaatgaagtgtactacccggaactggttcagctg
gctgccctggaaagggccttgtcgactccgggtggccagctacaagaagatcactttgcccaagccttggaacgagcgtt
ggcttcttctgggaaccagctggctgatgagcgaatggcccaggcccttgaaagagcggtgtccccacctagcaaccagt
tccagccagacaagcacctggcacgtgctttgcagcgcctccttcaggatgggcatcgccgggaccaggagtctgtctac
ctggcaaatctgctgaggctgtgggatgaagccaagggggcaaccttgtaccccgagtacgatgagactggcttggcagg
tggctcctctccacccagagcactgccgaatcgttattgggcccccgaaggaggttttgaaccccaagaagagctgggcg
ccgaggaggaagctgctggagaggtggaccccgaaatgctgaggtatctgattggcaggatcctatcaggagcaagcaac
atgccttcgcagcgcctcccactgactcccagacgcctgcgtcgtgccatctttgatggaggagacctacccgaaccccc
caatcttctgcgggtcaagcgtcttggtggggagagtggggacgagctgcagcgagtgaagaggacagaaggagaagtga
tgttatattgaatgagttcagtacaacttgaacatcacggaggttttcctggagggatgcaccttctccccaattctttt
catgtcatagaggattctgacaacaaacaatttcaggaattggaagctttttggcaactaggtcttttttcttttttcaa
ctgtaatttttcatctgccagaggccttggcgagtatggcagtctggataaatctggaacattctgttctttgt

Protein
Protein IDhabu1_s1426_g05116.t1
Definition-
>habu1_s1426_g05116.t1
MGPALLLALLSSLGAAKPLPTTGSSHGGMNHNLSGGVRRVRRELQGAPYEAVETALANEVYYPELVQLAALERALSTPGG
QLQEDHFAQALERALASSGNQLADERMAQALERAVSPPSNQFQPDKHLARALQRLLQDGHRRDQESVYLANLLRLWDEAK
GATLYPEYDETGLAGGSSPPRALPNRYWAPEGGFEPQEELGAEEEAAGEVDPEMLRYLIGRILSGASNMPSQRLPLTPRR
LRRAIFDGGDLPEPPNLLRVKRLGGESGDELQRVKRTEGEVMLY

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