Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s1426_g05117
Locus habu1_scaffold1426 : 564779 ... 581224 : +
To GenomeBrowser habu1_scaffold1426:564779..581224
Genes list of scaffold habu1_scaffold1426

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s1426_g05117.t1 gi|602630716|ref|XP_007422271.1| PREDICTED: myoD family inhibitor domain-containing protein-like [Python bivittatus] 5.0e-39
habu1_s1426_g05117.t1 gi|637255111|ref|XP_008120982.1| PREDICTED: myoD family inhibitor-like, partial [Anolis carolinensis] 2.0e-28
habu1_s1426_g05117.t1 gi|637372366|ref|XP_008122308.1| PREDICTED: keratin-associated protein 5-1-like isoform X1 [Anolis carolinensis] 7.0e-24
habu1_s1426_g05117.t1 gi|637372370|ref|XP_008122309.1| PREDICTED: myoD family inhibitor domain-containing protein-like isoform X2 [Anolis carolinensis] 4.0e-22

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 0.0
Venom grand-1 0.0
Pit, infrared sensing 0.0
Nose 0.0
Brain-1 0.0
Eye 0.3
fetal fibroblast 0.0
venom gland-2 0.0
Brain-2 0.1
Spleen 0.0
Lung 0.0
Liver 0.0
Kidney 0.0
Pancreas 0.0
Small intestine 0.0
Large intestine 0.0
Stomach 0.0
heart 0.0
ovary 0.1
cheek muscle 0.0

Transcript
Transcript IDhabu1_s1426_g05117.t1
Definition-
>habu1_s1426_g05117.t1
ctgtgaactgcttgctttaacagtttatttcccagatgtcagccatgaattcccttgtattggataggattgatggaaca
aatacagaacccataaaggacacagtggatgccactcaagtcactcctgattcagagtttcctccttcaattgccaccag
tacggcctgcttgtcttcccagcaggggaaggttcctctccgccctgcctcctgtaacaatggctgtggggttccgcctc
aggcttctgtgaagcaacagcaaccccaggcctcaaagaagcatcgcatcagctccacttcctccgtctgcaccagcagc
agtaagaagagctgcaagtcaacagcctctcagattcaggaggtagctggggatgagctgcgtgctgccatcctcttagc
ttctttcttcttttgctgtttttctgatatcctttctgggccctactctttctgctctgcctgcttgccttcctgcctat
tactcaaggctcctgggggctgtattctgacccttccagctgttgttgctgctgcagacttgaaggatcagccctggagt
tctgctaccagactcgtgactgtctggaacttgcattagaagtgtctgaattgtgctatcattgattaacccggctacca
tggaggctttctactaactgcctttcttcagggatcattatggcagtttggactattacaataaagaacaagataatatt
catcatt

Protein
Protein IDhabu1_s1426_g05117.t1
Definition-
>habu1_s1426_g05117.t1
MNSLVLDRIDGTNTEPIKDTVDATQVTPDSEFPPSIATSTACLSSQQGKVPLRPASCNNGCGVPPQASVKQQQPQASKKH
RISSTSSVCTSSSKKSCKSTASQIQEVAGDELRAAILLASFFFCCFSDILSGPYSFCSACLPSCLLLKAPGGCILTLPAV
VAAADLKDQPWSSATRLVTVWNLH

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