Gene
| Gene Model ID | habu1_s1426_g05122 |
|---|---|
| Locus | habu1_scaffold1426 : 708781 ... 717978 : - |
| To GenomeBrowser | habu1_scaffold1426:708781..717978 |
| Genes list of scaffold | habu1_scaffold1426 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-(apurinic or apyrimidinic site) lyase 2 | GO:0004518 GO:0005488 GO:0005739 GO:0090304 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1426_g05122.t2 | 1 | 1 | Exo_endo_phos | 4 | 372 | 8.3e-23 | 81.5 | 2.2e-25 | 1.1e-21 | 77.9 |
| habu1_s1426_g05122.t2 | 2 | 1 | Exo_endo_phos_2 | 138 | 195 | 1.1e-08 | 34.6 | 1.7e-07 | 0.00083 | 18.9 |
| habu1_s1426_g05122.t2 | 2 | 2 | Exo_endo_phos_2 | 328 | 375 | 1.1e-08 | 34.6 | 8.6e-06 | 0.042 | 13.4 |
| habu1_s1426_g05122.t2 | 1 | 1 | zf-GRF | 559 | 607 | 1.5e-10 | 40.8 | 8.1e-14 | 4.0e-10 | 39.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1426_g05122.t2 | gi|657773631|ref|XP_008317454.1| | PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Cynoglossus semilaevis] | 0.0 |
| habu1_s1426_g05122.t2 | gi|504178788|ref|XP_004598385.1| | PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Ochotona princeps] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.8 |
| Venom grand-1 | 4.5 |
| Pit, infrared sensing | 3.7 |
| Nose | 2.9 |
| Brain-1 | 1.8 |
| Eye | 3.4 |
| fetal fibroblast | 2.3 |
| venom gland-2 | 4.0 |
| Brain-2 | 1.6 |
| Spleen | 3.3 |
| Lung | 2.3 |
| Liver | 2.2 |
| Kidney | 3.6 |
| Pancreas | 1.7 |
| Small intestine | 2.8 |
| Large intestine | 2.4 |
| Stomach | 9.8 |
| heart | 3.0 |
| ovary | 38.6 |
| cheek muscle | 4.7 |
Transcript
| Transcript ID | habu1_s1426_g05122.t1 |
|---|---|
| Definition | - |
>habu1_s1426_g05122.t1 gcctgggtccgagacgccccgcttagttgggatgaggctggtgacttggaacgtgaacgggcttcgggcaggagccgggt cggcggggttgaggccgctcctggattctttgggagcggatgttatttgcttgcaggagactaagataacccgggacctg ctggaggagccattggctatagtggagggctatagctcctacttcagtttcagtcgcattcgcagtggctattcaggcgt tgcaaccttctgtaaggcaagtgctaccccagaagcagctgaggagggcttgtctgggctgtttaccaagcacagtggag cagtcggttgttatggaaacacagaggacttcacagctgatgagctcaaggccctggacagtgaaggccgggcagtgatc acccgccaccgcatatgcacttcagaacagcaggaaactctgctgactgtcatcaatgtgtattgccctcgtgctgaccc tgaaaagccagaacgtggagacttcaagctgcaattctaccgcctcttgcaagcccgggctgaagctcttctcagagctg gaggccatgtgatcatcctgggagacatcaatactgcacacaggcccatcgatcactgtgacccaggagatttggaatcc ttccaggagcatcctgggcgccactggctggacggtttcctctgggagcctggcagagattctgagaacgagaacctctt tgttgatactttccgctttctgaacccgagtcaggatgaagcctacacttgctggtgtaacgtaacaggatcccggcatc ttaactatggtacccgcattgactacatcctggctgaccgtgctctggcattgttggaactgaccgatgcccagatcatg ccagaggtgttgggctctgaccactgtcctgtccaggctgtgctgaaaagtagctgcctgtctgccccacggtgtccccc gctctgcacccggttcctgcctgagtttgctggcacccaacagaagctcaaccggtttctggtaaaagtggaacagacca aactgtctgagaagggacagaaacggagcaaagtggagagaactgccttggggaatttaaagaaaaggcggaccggactg gcacagaaagggcaaggggatttgcgtagcttcttcaaagctggaaccttggatgctgagcctgtggatgatggaagggg ccagtcagttttgaaagtggtccagagggcagcagcagaggattctgggaaatggcctattgtggagagcgctgaaagga taactgataaatgtggggtggaggaagtctcaggggtaacccagacatctattgagagtccaaaggtaccctctaagggt atgaccagcaaggcagctatgaattgtgagaaaaacacactcccctctacgcaaaatcagtctgtgttgtggaagtcact gctacctggccctgcacacccacctcgctgcaaggcccacaaggagccctgtgtgttgcgtacagtgaagaaacaagggc caaattgtggacgacgtttctttgtctgtgcccggcctctgggcaagccctcagatccccgtgcacggtgtgactacttc ctgtgggccagctagggcacttcctgagcagagcaaggggagtctgagtctgatttgtgttttgggtgctatgtacccca ttttacctgcccaggcaggccactttgacttgggatgagtaattgcaagtggctacatgaggtcaaggatgcatattttt ctgcttttttatattgcaggaacttctaaaaggtttcgggcaacttttgatctcagtcctcttttccctgttgccccatt aaaaatttaaatcttttgctgggaaatgactatcctttgtagaaaacacattttttaaaaaaacatttgataaaaataaa gatctttggtcaaaacaaagaa |
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| Transcript ID | habu1_s1426_g05122.t2 |
| Definition | - |
>habu1_s1426_g05122.t2 gcctgggtccgagacgccccgcttagttgggatgaggctggtgacttggaacgtgaacgggcttcgggcaggagccgggt cggcggggttgaggccgctcctggattctttgggagcggatgttatttgcttgcaggagactaagataacccgggacctg ctggaggagccattggctatagtggagggctatagctcctacttcagtttcagtcgcattcgcagtggctattcaggcgt tgcaaccttctgtaaggcaagtgctaccccagaagcagctgaggagggcttgtctgggctgtttaccaagcacagtggag cagtcggttgttatggaaacacagaggacttcacagctgatgagctcaaggccctggacagtgaaggccgggcagtgatc acccgccaccgcatatgcacttcagaacagcaggaaactctgctgactgtcatcaatgtgtattgccctcgtgctgaccc tgaaaagccagaacgtggagacttcaagctgcaattctaccgcctcttgcaagcccgggctgaagctcttctcagagctg gaggccatgtgatcatcctgggagacatcaatactgcacacaggcccatcgatcactgtgacccaggagatttgcccttg agactgcaacaaagctgccacaaagaagaggatatcaagctattctccaaggcgcctgaaggcaggacaagaagcaacgg gtggaaagtaatcaaggagagaagcaacctagaactaaggagaaacttcctgacagttagaacaattaaccagtggaaca acctgcctacagaagcggtgaatgctccaacactggagatttttaagaagagactggacagccatttgtccgaaatggaa tccttccaggagcatcctgggcgccactggctggacggtttcctctgggagcctggcagagattctgagaacgagaacct ctttgttgatactttccgctttctgaacccgagtcaggatgaagcctacacttgctggtgtaacgtaacaggatcccggc atcttaactatggtacccgcattgactacatcctggctgaccgtgctctggcattgttggaactgaccgatgcccagatc atgccagaggtgttgggctctgaccactgtcctgtccaggctgtgctgaaaagtagctgcctgtctgccccacggtgtcc cccgctctgcacccggttcctgcctgagtttgctggcacccaacagaagctcaaccggtttctggtaaaagtggaacaga ccaaactgtctgagaagggacagaaacggagcaaagtggagagaactgccttggggaatttaaagaaaaggcggaccgga ctggcacagaaagggcaaggggatttgcgtagcttcttcaaagctggaaccttggatgctgagcctgtggatgatggaag gggccagtcagttttgaaagtggtccagagggcagcagcagaggattctgggaaatggcctattgtggagagcgctgaaa ggataactgataaatgtggggtggaggaagtctcaggggtaacccagacatctattgagagtccaaaggtaccctctaag ggtatgaccagcaaggcagctatgaattgtgagaaaaacacactcccctctacgcaaaatcagtctgtgttgtggaagtc actgctacctggccctgcacacccacctcgctgcaaggcccacaaggagccctgtgtgttgcgtacagtgaagaaacaag ggccaaattgtggacgacgtttctttgtctgtgcccggcctctgggcaagccctcagatccccgtgcacggtgtgactac ttcctgtgggccagctagggcacttcctgagcagagcaaggggagtctgagtctgatttgtgttttgggtgctatgtacc ccattttacctgcccaggcaggccactttgacttgggatgagtaattgcaagtggctacatgaggtcaaggatgcatatt tttctgcttttttatattgcaggaacttctaaaaggtttcgggcaacttttgatctcagtcctcttttccctgttgcccc attaaaaatttaaatcttttgctgggaaatgactatcctttgtagaaaacacattttttaaaaaaacatttgataaaaat aaagatctttggtcaaaacaaagaa |
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Protein
| Protein ID | habu1_s1426_g05122.t1 |
|---|---|
| Definition | - |
>habu1_s1426_g05122.t1 MRLVTWNVNGLRAGAGSAGLRPLLDSLGADVICLQETKITRDLLEEPLAIVEGYSSYFSFSRIRSGYSGVATFCKASATP EAAEEGLSGLFTKHSGAVGCYGNTEDFTADELKALDSEGRAVITRHRICTSEQQETLLTVINVYCPRADPEKPERGDFKL QFYRLLQARAEALLRAGGHVIILGDINTAHRPIDHCDPGDLESFQEHPGRHWLDGFLWEPGRDSENENLFVDTFRFLNPS QDEAYTCWCNVTGSRHLNYGTRIDYILADRALALLELTDAQIMPEVLGSDHCPVQAVLKSSCLSAPRCPPLCTRFLPEFA GTQQKLNRFLVKVEQTKLSEKGQKRSKVERTALGNLKKRRTGLAQKGQGDLRSFFKAGTLDAEPVDDGRGQSVLKVVQRA AAEDSGKWPIVESAERITDKCGVEEVSGVTQTSIESPKVPSKGMTSKAAMNCEKNTLPSTQNQSVLWKSLLPGPAHPPRC KAHKEPCVLRTVKKQGPNCGRRFFVCARPLGKPSDPRARCDYFLWAS |
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| Protein ID | habu1_s1426_g05122.t2 |
| Definition | - |
>habu1_s1426_g05122.t2 MRLVTWNVNGLRAGAGSAGLRPLLDSLGADVICLQETKITRDLLEEPLAIVEGYSSYFSFSRIRSGYSGVATFCKASATP EAAEEGLSGLFTKHSGAVGCYGNTEDFTADELKALDSEGRAVITRHRICTSEQQETLLTVINVYCPRADPEKPERGDFKL QFYRLLQARAEALLRAGGHVIILGDINTAHRPIDHCDPGDLPLRLQQSCHKEEDIKLFSKAPEGRTRSNGWKVIKERSNL ELRRNFLTVRTINQWNNLPTEAVNAPTLEIFKKRLDSHLSEMESFQEHPGRHWLDGFLWEPGRDSENENLFVDTFRFLNP SQDEAYTCWCNVTGSRHLNYGTRIDYILADRALALLELTDAQIMPEVLGSDHCPVQAVLKSSCLSAPRCPPLCTRFLPEF AGTQQKLNRFLVKVEQTKLSEKGQKRSKVERTALGNLKKRRTGLAQKGQGDLRSFFKAGTLDAEPVDDGRGQSVLKVVQR AAAEDSGKWPIVESAERITDKCGVEEVSGVTQTSIESPKVPSKGMTSKAAMNCEKNTLPSTQNQSVLWKSLLPGPAHPPR CKAHKEPCVLRTVKKQGPNCGRRFFVCARPLGKPSDPRARCDYFLWAS |
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