Gene
| Gene Model ID | habu1_s1426_g05147 |
|---|---|
| Locus | habu1_scaffold1426 : 1543175 ... 1555377 : + |
| To GenomeBrowser | habu1_scaffold1426:1543175..1555377 |
| Genes list of scaffold | habu1_scaffold1426 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| isocitrate dehydrogenase | EC:1.1.1.41 GO:0000287 GO:0004449 GO:0005730 GO:0005739 GO:0006099 GO:0051287 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1426_g05147.t1 | 1 | 1 | Iso_dh | 52 | 378 | 0.0 | 246.0 | 0.0 | 0.0 | 245.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1426_g05147.t1 | gi|602627158|ref|XP_007420528.1| | PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial-like [Python bivittatus] | 0.0 |
| habu1_s1426_g05147.t1 | gi|637264602|ref|XP_003216938.2| | PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [Anolis carolinensis] | 0.0 |
| habu1_s1426_g05147.t1 | gi|344306198|ref|XP_003421775.1| | PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [Loxodonta africana] | 0.0 |
| habu1_s1426_g05147.t1 | gi|403306853|ref|XP_003943934.1| | PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [Saimiri boliviensis boliviensis] | 0.0 |
| habu1_s1426_g05147.t1 | gi|634893700|ref|XP_007955356.1| | PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [Orycteropus afer afer] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 13.6 |
| Venom grand-1 | 10.8 |
| Pit, infrared sensing | 12.4 |
| Nose | 12.2 |
| Brain-1 | 19.0 |
| Eye | 18.2 |
| fetal fibroblast | 20.6 |
| venom gland-2 | 19.6 |
| Brain-2 | 22.6 |
| Spleen | 8.9 |
| Lung | 7.9 |
| Liver | 15.5 |
| Kidney | 16.8 |
| Pancreas | 13.9 |
| Small intestine | 8.9 |
| Large intestine | 20.2 |
| Stomach | 14.4 |
| heart | 51.6 |
| ovary | 41.7 |
| cheek muscle | 38.9 |
Transcript
| Transcript ID | habu1_s1426_g05147.t1 |
|---|---|
| Definition | - |
>habu1_s1426_g05147.t1 gcgatgtctgggtcttattatccactccatgcgcgtctatccgaaggagactgaaggatggccgtttcggtgattttgag cacagctaggcagctttggaggccgactctgctggtacctcgattggtgcacactataacagatggcaatcacagaaata ttgcctcacaacagagtattcctcccccagccaagtatggtggtcgccatacagtgaccatgatcccaggggatgggatt gggccagagctcatgcttcatgtcaaagaattgttccggcatgcctgtgtacccgtggactttgaggaagttctagtgag ctcagaggcttctgaaagtgacatacaaaatgctatcatggctatccgccgtaaccgtgtggccctcaaaggaaacatcg agacaaaccataacctgccaccttcccacaagtcccggaacaacatattgcgtactactttggatctctttgccaatctg attcattgcaagagccttccaggtgtggcaaccagacaccaggacatcgacatcctcattgtccgggagaacacagaggg ggaatacagcagcctagaacatgagagtgtctctggcgtggtggagagcctcaagatcatcacaaagacaaagtcgctgc gcattgctgaatatgctttcaggttggcacatgaagctggtcgcaagaaagtgacagctgtccacaaggccaatattatg aaactgggtgacggtctgttcctgcagtgttgcaaagaggtggcagctggctacccaaacatcacctttgagagcatgat tgtcgacaacaccaccatgcagctggtttcccgtccacagcagtttgacgtcatggttatgcctaacctctacggcaata ttgtcaacaatgtctgcgccggattggttggtggtccaggcctggtcccaggagccaattatggccatgcctatgcggtt tttgaaacggccacacgcaacactggcaaaagtattgcaggcaagaacattgcaaaccccacagcaatgctcctcgccag ctgtatgatgctggatcaccttagattgcacagctacgcatctgtgatccgcaaggcagtcctaacctccatggatgatg tggaaacccacacgccagatattgggggccagggtaccacctcagtcgctgttcagtcaattatgaagcagatcaccaag cctaggtctcacctagcacagtaaatgaagctgaaggtcaaagctgtcccagctacagcagatacccattctttttcttc agtaaaagcaacggagcaagtctttatgaatggtgcagaccttttcatttcaaactatttaagtatccttctgtatatag tgtgtaaagttaatgtttctcacccagctccatgaactagaaataataaatataaacagtttagagaggttttctgggct cttatttttagtctggttggcagaaaatcataacaataaaagtgaaatggagtgacttggaa |
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Protein
| Protein ID | habu1_s1426_g05147.t1 |
|---|---|
| Definition | - |
>habu1_s1426_g05147.t1 MAVSVILSTARQLWRPTLLVPRLVHTITDGNHRNIASQQSIPPPAKYGGRHTVTMIPGDGIGPELMLHVKELFRHACVPV DFEEVLVSSEASESDIQNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTTLDLFANLIHCKSLPGVATRHQDIDIL IVRENTEGEYSSLEHESVSGVVESLKIITKTKSLRIAEYAFRLAHEAGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYP NITFESMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVPGANYGHAYAVFETATRNTGKSIAGKNIAN PTAMLLASCMMLDHLRLHSYASVIRKAVLTSMDDVETHTPDIGGQGTTSVAVQSIMKQITKPRSHLAQ |
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