Gene
| Gene Model ID | habu1_s1426_g05158 |
|---|---|
| Locus | habu1_scaffold1426 : 2049506 ... 2075725 : - |
| To GenomeBrowser | habu1_scaffold1426:2049506..2075725 |
| Genes list of scaffold | habu1_scaffold1426 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| biglycan isoform 1 | GO:0005539 GO:0009986 GO:0019800 GO:0030133 GO:0031012 GO:0042383 GO:0050840 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1426_g05158.t1 | 1 | 1 | LRRNT | 72 | 97 | 7.8e-10 | 37.9 | 5.4e-13 | 8.0e-10 | 37.9 |
| habu1_s1426_g05158.t1 | 4 | 1 | LRR_8 | 103 | 159 | 7.1e-33 | 112.1 | 4.2e-14 | 6.3e-11 | 41.8 |
| habu1_s1426_g05158.t1 | 2 | 1 | LRR_4 | 104 | 138 | 3.0e-21 | 74.5 | 1.2e-06 | 0.0018 | 17.8 |
| habu1_s1426_g05158.t1 | 4 | 2 | LRR_8 | 124 | 174 | 7.1e-33 | 112.1 | 3.1e-12 | 4.5e-09 | 35.9 |
| habu1_s1426_g05158.t1 | 4 | 3 | LRR_8 | 169 | 225 | 7.1e-33 | 112.1 | 8.3e-11 | 1.2e-07 | 31.3 |
| habu1_s1426_g05158.t1 | 4 | 4 | LRR_8 | 263 | 321 | 7.1e-33 | 112.1 | 1.1e-11 | 1.6e-08 | 34.1 |
| habu1_s1426_g05158.t1 | 2 | 2 | LRR_4 | 288 | 322 | 3.0e-21 | 74.5 | 4.0e-08 | 5.9e-05 | 22.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1426_g05158.t1 | gi|602627200|ref|XP_007420549.1| | PREDICTED: biglycan [Python bivittatus] | 0.0 |
| habu1_s1426_g05158.t1 | gi|327264284|ref|XP_003216944.1| | PREDICTED: biglycan [Anolis carolinensis] | 0.0 |
| habu1_s1426_g05158.t1 | gi|345326261|ref|XP_003431026.1| | PREDICTED: biglycan [Ornithorhynchus anatinus] | 0.0 |
| habu1_s1426_g05158.t1 | gi|488526865|ref|XP_004455256.1| | 0.0 | |
| habu1_s1426_g05158.t1 | gi|403306817|ref|XP_003943916.1| | PREDICTED: biglycan [Saimiri boliviensis boliviensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 103.7 |
| Venom grand-1 | 28.1 |
| Pit, infrared sensing | 153.3 |
| Nose | 46.1 |
| Brain-1 | 23.3 |
| Eye | 78.3 |
| fetal fibroblast | 593.0 |
| venom gland-2 | 47.5 |
| Brain-2 | 15.4 |
| Spleen | 47.5 |
| Lung | 34.9 |
| Liver | 7.3 |
| Kidney | 31.9 |
| Pancreas | 4.4 |
| Small intestine | 9.5 |
| Large intestine | 67.4 |
| Stomach | 24.4 |
| heart | 56.6 |
| ovary | 6.6 |
| cheek muscle | 3.8 |
Transcript
| Transcript ID | habu1_s1426_g05158.t1 |
|---|---|
| Definition | - |
>habu1_s1426_g05158.t1 gcaaaaaaaaaaaaaggttcaatcaatcagtcaatttcaacttcttgcaggaaaaaaaaagatcttacaaagttggaatt gattgattgaactttttagtcccacccagtctgccgttaccaccacagccatgtccacccaatgggccacacaccccatt ggccacacccagccaatgggccacacccagccaatgggccacatgcacccggcacccgatgatgcataacctgggacctc ccactatggaacacttccttcttctgatgcccctcctgggtctggtgagcagtgaattgccatttgtacaaagaggattc tgggacttctccatggacgatccctcggttcaagaagaggaagaggcttctgggatcctccctacttcgagtggatctga ggcagaagacattcctttctacccaggcctctgtccctttggctgtcattgccacctaagggtggtccaatgctctgatc tgggtctcaagcaagtgcctaaggaaatctcgccagacaccacattactagatctgcaaaacaaccacattacggagctg cgcaaagatgactttaaagggctctttcgcctctatgctttggtattggtgaacaataagatctccaagatccatccaaa ggcttttagccctctgattaagctgcagaaactctacatctccaagaacaacttggtggagattcctcctaacctgccca actccttggtggaactccggatccatgagaacaaaatcaagaagatcccaaaagctgtcttcaatgggctccacaacatg aattgcattgaaatgggtgggaatcctctggagaacagtggatttgaacctggtgcctttgatggcctaaaactgaacta cctgaggatctcagaagcaaagctcactggtgtacccaaagacctccctgaaaccttaactgagctacatctggaccaca acaagatccaggcaattgaattagaggatttgatccgctactccaaaatctacagattgggcctcggacacaacaatatt cgcatgattgagaatggcagtcttgctttcctgcctatcctacgtgagttgcacttggataacaacaagctctcaagagt ccccccaggattgcctgatctcaagtttctgcaggtggtgtacttgcattccaacaacattactcatgttggcgttaacg atttctgccctgtgggctttggggtaaagcgtgcctcgtaccatggaatcagcctttttggcaaccctgtgccttactgg gaagttcaaccagctactttccgctgtgccactgaccgcctggctatccagtttggcaactacaaaaaataaagaataaa cgagggagggagggttgggtatagagggacaagttacaccatgactctcttctttctgtaatctatcctgtctcatcatc aaaactataaatcacaagttcatttttacacaaaaaatccataatgggtttccagtcatcaataaatgtacgcatttcca tctgcatg |
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Protein
| Protein ID | habu1_s1426_g05158.t1 |
|---|---|
| Definition | - |
>habu1_s1426_g05158.t1 MMHNLGPPTMEHFLLLMPLLGLVSSELPFVQRGFWDFSMDDPSVQEEEEASGILPTSSGSEAEDIPFYPGLCPFGCHCHL RVVQCSDLGLKQVPKEISPDTTLLDLQNNHITELRKDDFKGLFRLYALVLVNNKISKIHPKAFSPLIKLQKLYISKNNLV EIPPNLPNSLVELRIHENKIKKIPKAVFNGLHNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGVPKDLPETL TELHLDHNKIQAIELEDLIRYSKIYRLGLGHNNIRMIENGSLAFLPILRELHLDNNKLSRVPPGLPDLKFLQVVYLHSNN ITHVGVNDFCPVGFGVKRASYHGISLFGNPVPYWEVQPATFRCATDRLAIQFGNYKK |
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