Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s1426_g05180
Locus habu1_scaffold1426 : 2870960 ... 2900423 : +
To GenomeBrowser habu1_scaffold1426:2870960..2900423
Genes list of scaffold habu1_scaffold1426

Annotation by Blast2GO
Annotation GO
protein bicaudal d-like partial GO:0005794 GO:0006810

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s1426_g05180.t2 2 1 BicD 108 395 0.0 654.2 0.0 0.0 283.6
habu1_s1426_g05180.t2 2 2 BicD 425 721 0.0 654.2 0.0 0.0 381.2

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 0.6
Venom grand-1 0.3
Pit, infrared sensing 0.8
Nose 0.4
Brain-1 0.4
Eye 0.4
fetal fibroblast 3.2
venom gland-2 0.3
Brain-2 0.6
Spleen 2.2
Lung 0.9
Liver 0.5
Kidney 0.6
Pancreas 0.2
Small intestine 0.3
Large intestine 0.5
Stomach 0.7
heart 0.5
ovary 36.4
cheek muscle 1.4

Transcript
Transcript IDhabu1_s1426_g05180.t1
Definition-
>habu1_s1426_g05180.t1
aaggcttgtagactttggagaagagggaagctgtggcttaaaaacactcccgagtggacagttgctttgcctgtgctgaa
aaaacagaattgagcccagatagtttttcggaaattcccttcccgctcaatgggctgttgctattggcgaaggcgaacca
cgccccttttctgaaaagcaaggtatagcatgccagaaactctcatggcccaggatcctacaaagctgcaagcagaggtg
gatcgactagcagctgagctgcaggaggcaatccaagagaatgtccaggcagcccaatatgggctggctgtgctggagga
gaatgaggagctcaagcagcgctgtggagatctagaaggtcagctagaggtcctgcgtgtagaattggcccacatgaagg
aggctttggcagaatctcatagcagtcataaacgagcagcagttgatggggagaaccgggaagagtctctactcagggaa
tcagcttccaaagaggcccatctgactcaaaccattgaggagcttcaaagtgatgtgaaattcctgaaatcccagcttga
caatacaggggcggaaaatgagcggctcagcgtagctctgcgagacttaaggaaggagtgccagaccctggagtctgaaa
aaaatcaattgcgtgaggagatgaaacaagctaagtcacgggagcttcgccagttgcaggattgtggagagcttgaggaa
gaaaatatctccttgcagaaacaggtctccatcctccggggaaatcaggtggaatttgagagtgtcaagcgtgccttaag
gtgccacgaggaagagctcatgttggctggttcccagctacaagaactgggtcgtcttcgggatttggccgaacagcaac
ttcaggaggcccttgagactgtccaagctgagcgtgagcagaagcaggaactgcggcgggagctagccgtctatgttggg
ggccgtcatgattctctgaacagcttgcaggccaacctggaggagctcagccacagccacaccacagagtgcgaggagca
agacagtggttttgccaacggtagcaacgtagggggggtgacatccacacctcacagcttccagcctgcacctggtcttg
ttgcagatctcttcagtgaacttaacttggcagagattcacaagctacagcagcaactccaacaggcagaaaaagaaaaa
gcttcactagcttcagatctgcaagatctcaagaaacagctgaccaggactaaggagatcttggctcaacagcagttgtg
caacagccgtcaagtagatcagcttccagccccagaggctaagcccagtgctaataacagtggggatagcctgtcaccca
ataatagggaatgctaccgtgaggagctggaaagggcccaactggcaatccggcaagagagagaggcagctgcccaccta
gaagctgagttgagaattgctagacggattaccagagagtatcagtcacggctggctgagactcaggaggagatccttat
tttttctgaagatatggcaactctctaccatcacatctgtgccctccacaacataaccccacaccgtgtagtattggact
attacagggagggccgtggtgtccaaagtgtgcgcagaaggcagtcctccagaaaacatatgttcacagaaatagagaca
actagcagtgcagacagatcaccagccagtagccctggctccccatgtggtttggagcctctttatgtcactaatctgac
agagatcttgagagaacagctggggcatctgcaggtggcactgtcctttgcccatcagcagtgcccaatggggcacagag
ctgaactggaacgtgataaagaagttctggtagaagaggtgctgaaactgaagtccatgttgagcacaaagcgtgaacag
gttgctacactgcgcacagtgcttaaggccaacaagcagacagcagaggcagccctctcaaatcttaaaggacagtacga
aggtgaaaaggtgctggtgtcagagaccatgatcaagttgcgtcatgagctcaaggccttgaaggaggatgctgctactt
tctcttccctacgtgctatgtttgctagcaggtgtgatcagtacgtgagccagctagatgagatgcaacggcaactggaa
gctgcagaggatgaaaagaagactctaaactccttgttgcgcatggcgatccagcagaagctggcactcacacatcgact
ggaggctcttgaaaacccagtggaagagttgaggggcaataggagggtactcagagcaaccaagggtagtgcgagatgag
attaactggattcggttttacaggtagcttgaaacaggtgcacaactgatggatcaatgcatatgtaacaatgagatgta
ttgtcagataaagatatacctggaagcaattttgcagcttggagctaggcaagcacctggtttctcttaaatgaatgatt
tccctggtttataatctctttttaactacaatccaggaaataaaactgtagtttaaaactttgcaaaacataaggaatat
caaaacactttgtagttctaaatagacatattatttaacatgccaaaaaagattatcctttacagttgccctataattct
atcccaagatagtctgaaatcttttgcagaatcatatcacatgatctttgacatttttgtttcttttcatcatttgttaa
ttctattcttgatacatttgcattgttccaaaaacacctgcccatctatgatagtttcataatatgttttctctttctcc
cattttttactgacataatatacttaaaggggaagagtcttactgaaatgaatgggggtctatatttgctgaaatatttt
ctcttagttttttcggatcataatgaaccagaaatagtcatttcttttttgcagtatctgaatgtcagaaaatttcttaa
taatatggtcaatctctagtttcttgggcggttttctctgtgctaggaagtagatgcatataattatcccttcctccttt
ggcctggatgcaagtggttttgaaagctatttcaaggatattgtgccaggcactgggaggaaaggcagagaaagatattt
tgggctttgtttaattataatattgccagacagaacagtattgtgaagactatatggttggctggtgcccccttctggtg
aaaattgggtagcataatatacttatttaaagatcccttcttgactacataattgataacaaacattggttttattgtta
agtaatattgtgtgaaaatctccttcccctcttaattgaatgacatctgtgggaatttgataaaaggaaggggttaagaa
ataagaaaaaaaaatatcacacctttgaattaaaaaaacacgaatgttaatatataacggttcttttgggtttctcaata
gaaagaaagtccctgtagaatagtatgccctcatcaatatgcaataataaaaaatatgtatttttaaaacttaagatgta
aatattaatttgcattatctatgtttcagttactgtaaagaagacctttcattgtcccctgtatcattcaaaacattgcc
agcaggcagggaaaagttatgcttgattcagagagacagaaagtcatggctacttgtgtcaaatactgtttaatgcagaa
attttcaaactggttcatgatatcctgggaatttttgagcaaatctgggaggggtttgccaagttttttcaccatgtaca
ggaaaagctggagcctatactccttctctgtctaggtaagctggtttatccattcgttatcaggctgattgcttcgttgc
catagtggggcgggtcctgcacatctaagatcttgagcctaccataccaagtactaaaggccacacacgttatttattta
aatttattgactgcccaactccactagactctgggctgcacacaaagctagaaaagacataaaaacagttaaagatatta
aattacatttagagggtgatcatgacagtagatgtagaaaggagctgagcaagggtatttttgactgtattctatgttga
tgcccaaaaggggagtgctatgcatcaaggtagtccggggtgctcagctgctgatgtgctggtaggggaaagaaagaata
cacatggggaagaaaataaggtggcactaggcaggacagacaaatacaattggcttgctcaaataaaaccagaccatgtt
ctgacaggactccagctttgcatttgaagaactaatagtttgtataaagaattggccagcgcaaaacccccaaaacttta
cctgcgttagttgttgatatgtttctcttcttcctcattcataggggacgatatatagtatttttattctggggagtcat
gataccacaaagttcaaaaacctctggcttagtagtcagagtagtccagctgtggaaagtttaacactatccatgaggtc
ctagctagttttagtgagacctatacacaaagttaggggaggtaggaaataatcctttacttcactgggacaatgtgaca
aattgtcagactgaactctgccttggacttgatcatttttcccttaaaaatagcattaataagaatctgggaccttttgt
attaaaaatttatgaaccatgtatatgtattatctacttccaactaaaatgatttattcctaaagtatagtagcttttcc
tgagctatccacacacaaacaagggaggtatgtagacaaccgtgtggatctacacccttcctccataaagggaaactaat
aatactgtagcttaatgagtaagtatatatgttcttgccaatgcttgccaatagcaagaagctagtctctgtcattaaga
gtggcaatgtcatatcctttgcactggcaaaagtaagccagagaaagtaagtagccacatgtggagcaatatgacacaaa
tgaaggactgtataatggagctgtgtgatgcttccaaaaaaggtgcattggagtatacaacgatacaaaagtagcacttc
ctacctttaatgtttatatcacataaaagaacatgtagaatagatagaactgagtgaagatactttgctggctgaggtgg
tgtcccttccaaagtcaaggtgcagaatatatgcattaactacaataactgaaaatgggaaattccactagcatcactta
ataggaataaaaggatggggagtaaaaagtactgctcttccatgtgccctagcagagatggaactgaaatactcccatct
gacactgattctgaaaaagacagtttagaaaatcacaggaagtaaaatgatgatgctaaccctttaaaaaactgcatatt
gatcagatggagtacagttcaaggaaaggataagattaaaaattattgatgtccagcttaag
Transcript IDhabu1_s1426_g05180.t2
Definition-
>habu1_s1426_g05180.t2
cgacttacgaccggtttagtcctcgacatatgaccggtttagtcctcgacttacgaccggttggggtcgcggcattaaaa
aggcttctgtcaggagatgctgaaactagaagcaggattaggtatagcatgccagaaactctcatggcccaggatcctac
aaagctgcaagcagaggtggatcgactagcagctgagctgcaggaggcaatccaagagaatgtccaggcagcccaatatg
ggctggctgtgctggaggagaatgaggagctcaagcagcgctgtggagatctagaaggtcagctagaggtcctgcgtgta
gaattggcccacatgaaggaggctttggcagaatctcatagcagtcataaacgagcagcagttgatggggagaaccggga
agagtctctactcagggaatcagcttccaaagaggcccatctgactcaaaccattgaggagcttcaaagtgatgtgaaat
tcctgaaatcccagcttgacaatacaggggcggaaaatgagcggctcagcgtagctctgcgagacttaaggaaggagtgc
cagaccctggagtctgaaaaaaatcaattgcgtgaggagatgaaacaagctaagtcacgggagcttcgccagttgcagga
ttgtggagagcttgaggaagaaaatatctccttgcagaaacaggtctccatcctccggggaaatcaggtggaatttgaga
gtgtcaagcgtgccttaaggtgccacgaggaagagctcatgttggctggttcccagctacaagaactgggtcgtcttcgg
gatttggccgaacagcaacttcaggaggcccttgagactgtccaagctgagcgtgagcagaagcaggaactgcggcggga
gctagccgtctatgttgggggccgtcatgattctctgaacagcttgcaggccaacctggaggagctcagccacagccaca
ccacagagtgcgaggagcaagacagtggttttgccaacggtagcaacgtagggggggtgacatccacacctcacagcttc
cagcctgcacctggtcttgttgcagatctcttcagtgaacttaacttggcagagattcacaagctacagcagcaactcca
acaggcagaaaaagaaaaagcttcactagcttcagatctgcaagatctcaagaaacagctgaccaggactaaggagatct
tggctcaacagcagttgtgcaacagccgtcaagtagatcagcttccagccccagaggctaagcccagtgctaataacagt
ggggatagcctgtcacccaataatagggaatgctaccgtgaggagctggaaagggcccaactggcaatccggcaagagag
agaggcagctgcccacctagaagctgagttgagaattgctagacggattaccagagagtatcagtcacggctggctgaga
ctcaggaggagatccttattttttctgaagatatggcaactctctaccatcacatctgtgccctccacaacataacccca
caccgtgtagtattggactattacagggagggccgtggtgtccaaagtgtgcgcagaaggcagtcctccagaaaacatat
gttcacagaaatagagacaactagcagtgcagacagatcaccagccagtagccctggctccccatgtggtttggagcctc
tttatgtcactaatctgacagagatcttgagagaacagctggggcatctgcaggtggcactgtcctttgcccatcagcag
tgcccaatggggcacagagctgaactggaacgtgataaagaagttctggtagaagaggtgctgaaactgaagtccatgtt
gagcacaaagcgtgaacaggttgctacactgcgcacagtgcttaaggccaacaagcagacagcagaggcagccctctcaa
atcttaaaggacagtacgaaggtgaaaaggtgctggtgtcagagaccatgatcaagttgcgtcatgagctcaaggccttg
aaggaggatgctgctactttctcttccctacgtgctatgtttgctagcaggtgtgatcagtacgtgagccagctagatga
gatgcaacggcaactggaagctgcagaggatgaaaagaagactctaaactccttgttgcgcatggcgatccagcagaagc
tggcactcacacatcgactggaggctcttgaaaacccagtggaagagttgaggggcaataggagggtactcagagcaacc
aagggtagtgcgagatgagattaactggattcggttttacaggtagcttgaaacaggtgcacaactgatggatcaatgca
tatgtaacaatgagatgtattgtcagataaagatatacctggaagcaattttgcagcttggagctaggcaagcacctggt
ttctcttaaatgaatgatttccctggtttataatctctttttaactacaatccaggaaataaaactgtagtttaaaactt
tgcaaaacataaggaatatcaaaacactttgtagttctaaatagacatattatttaacatgccaaaaaagattatccttt
acagttgccctataattctatcccaagatagtctgaaatcttttgcagaatcatatcacatgatctttgacatttttgtt
tcttttcatcatttgttaattctattcttgatacatttgcattgttccaaaaacacctgcccatctatgatagtttcata
atatgttttctctttctcccattttttactgacataatatacttaaaggggaagagtcttactgaaatgaatgggggtct
atatttgctgaaatattttctcttagttttttcggatcataatgaaccagaaatagtcatttcttttttgcagtatctga
atgtcagaaaatttcttaataatatggtcaatctctagtttcttgggcggttttctctgtgctaggaagtagatgcatat
aattatcccttcctcctttggcctggatgcaagtggttttgaaagctatttcaaggatattgtgccaggcactgggagga
aaggcagagaaagatattttgggctttgtttaattataatattgccagacagaacagtattgtgaagactatatggttgg
ctggtgcccccttctggtgaaaattgggtagcataatatacttatttaaagatcccttcttgactacataattgataaca
aacattggttttattgttaagtaatattgtgtgaaaatctccttcccctcttaattgaatgacatctgtgggaatttgat
aaaaggaaggggttaagaaataagaaaaaaaaatatcacacctttgaattaaaaaaacacgaatgttaatatataacggt
tcttttgggtttctcaatagaaagaaagtccctgtagaatagtatgccctcatcaatatgcaataataaaaaatatgtat
ttttaaaacttaagatgtaaatattaatttgcattatctatgtttcagttactgtaaagaagacctttcattgtcccctg
tatcattcaaaacattgccagcaggcagggaaaagttatgcttgattcagagagacagaaagtcatggctacttgtgtca
aatactgtttaatgcagaaattttcaaactggttcatgatatcctgggaatttttgagcaaatctgggaggggtttgcca
agttttttcaccatgtacaggaaaagctggagcctatactccttctctgtctaggtaagctggtttatccattcgttatc
aggctgattgcttcgttgccatagtggggcgggtcctgcacatctaagatcttgagcctaccataccaagtactaaaggc
cacacacgttatttatttaaatttattgactgcccaactccactagactctgggctgcacacaaagctagaaaagacata
aaaacagttaaagatattaaattacatttagagggtgatcatgacagtagatgtagaaaggagctgagcaagggtatttt
tgactgtattctatgttgatgcccaaaaggggagtgctatgcatcaaggtagtccggggtgctcagctgctgatgtgctg
gtaggggaaagaaagaatacacatggggaagaaaataaggtggcactaggcaggacagacaaatacaattggcttgctca
aataaaaccagaccatgttctgacaggactccagctttgcatttgaagaactaatagtttgtataaagaattggccagcg
caaaacccccaaaactttacctgcgttagttgttgatatgtttctcttcttcctcattcataggggacgatatatagtat
ttttattctggggagtcatgataccacaaagttcaaaaacctctggcttagtagtcagagtagtccagctgtggaaagtt
taacactatccatgaggtcctagctagttttagtgagacctatacacaaagttaggggaggtaggaaataatcctttact
tcactgggacaatgtgacaaattgtcagactgaactctgccttggacttgatcatttttcccttaaaaatagcattaata
agaatctgggaccttttgtattaaaaatttatgaaccatgtatatgtattatctacttccaactaaaatgatttattcct
aaagtatagtagcttttcctgagctatccacacacaaacaagggaggtatgtagacaaccgtgtggatctacacccttcc
tccataaagggaaactaataatactgtagcttaatgagtaagtatatatgttcttgccaatgcttgccaatagcaagaag
ctagtctctgtcattaagagtggcaatgtcatatcctttgcactggcaaaagtaagccagagaaagtaagtagccacatg
tggagcaatatgacacaaatgaaggactgtataatggagctgtgtgatgcttccaaaaaaggtgcattggagtatacaac
gatacaaaagtagcacttcctacctttaatgtttatatcacataaaagaacatgtagaatagatagaactgagtgaagat
actttgctggctgaggtggtgtcccttccaaagtcaaggtgcagaatatatgcattaactacaataactgaaaatgggaa
attccactagcatcacttaataggaataaaaggatggggagtaaaaagtactgctcttccatgtgccctagcagagatgg
aactgaaatactcccatctgacactgattctgaaaaagacagtttagaaaatcacaggaagtaaaatgatgatgctaacc
ctttaaaaaactgcatattgatcagatggagtacagttcaaggaaaggataagattaaaaattattgatgtccagcttaa
g

Protein
Protein IDhabu1_s1426_g05180.t1
Definition-
>habu1_s1426_g05180.t1
MPETLMAQDPTKLQAEVDRLAAELQEAIQENVQAAQYGLAVLEENEELKQRCGDLEGQLEVLRVELAHMKEALAESHSSH
KRAAVDGENREESLLRESASKEAHLTQTIEELQSDVKFLKSQLDNTGAENERLSVALRDLRKECQTLESEKNQLREEMKQ
AKSRELRQLQDCGELEEENISLQKQVSILRGNQVEFESVKRALRCHEEELMLAGSQLQELGRLRDLAEQQLQEALETVQA
EREQKQELRRELAVYVGGRHDSLNSLQANLEELSHSHTTECEEQDSGFANGSNVGGVTSTPHSFQPAPGLVADLFSELNL
AEIHKLQQQLQQAEKEKASLASDLQDLKKQLTRTKEILAQQQLCNSRQVDQLPAPEAKPSANNSGDSLSPNNRECYREEL
ERAQLAIRQEREAAAHLEAELRIARRITREYQSRLAETQEEILIFSEDMATLYHHICALHNITPHRVVLDYYREGRGVQS
VRRRQSSRKHMFTEIETTSSADRSPASSPGSPCGLEPLYVTNLTEILREQLGHLQVALSFAHQQCPMGHRAELERDKEVL
VEEVLKLKSMLSTKREQVATLRTVLKANKQTAEAALSNLKGQYEGEKVLVSETMIKLRHELKALKEDAATFSSLRAMFAS
RCDQYVSQLDEMQRQLEAAEDEKKTLNSLLRMAIQQKLALTHRLEALENPVEELRGNRRVLRATKGSAR
Protein IDhabu1_s1426_g05180.t2
Definition-
>habu1_s1426_g05180.t2
MTGLVLDLRPVGVAALKRLLSGDAETRSRIRYSMPETLMAQDPTKLQAEVDRLAAELQEAIQENVQAAQYGLAVLEENEE
LKQRCGDLEGQLEVLRVELAHMKEALAESHSSHKRAAVDGENREESLLRESASKEAHLTQTIEELQSDVKFLKSQLDNTG
AENERLSVALRDLRKECQTLESEKNQLREEMKQAKSRELRQLQDCGELEEENISLQKQVSILRGNQVEFESVKRALRCHE
EELMLAGSQLQELGRLRDLAEQQLQEALETVQAEREQKQELRRELAVYVGGRHDSLNSLQANLEELSHSHTTECEEQDSG
FANGSNVGGVTSTPHSFQPAPGLVADLFSELNLAEIHKLQQQLQQAEKEKASLASDLQDLKKQLTRTKEILAQQQLCNSR
QVDQLPAPEAKPSANNSGDSLSPNNRECYREELERAQLAIRQEREAAAHLEAELRIARRITREYQSRLAETQEEILIFSE
DMATLYHHICALHNITPHRVVLDYYREGRGVQSVRRRQSSRKHMFTEIETTSSADRSPASSPGSPCGLEPLYVTNLTEIL
REQLGHLQVALSFAHQQCPMGHRAELERDKEVLVEEVLKLKSMLSTKREQVATLRTVLKANKQTAEAALSNLKGQYEGEK
VLVSETMIKLRHELKALKEDAATFSSLRAMFASRCDQYVSQLDEMQRQLEAAEDEKKTLNSLLRMAIQQKLALTHRLEAL
ENPVEELRGNRRVLRATKGSAR

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