Gene
| Gene Model ID | habu1_s1426_g05182 |
|---|---|
| Locus | habu1_scaffold1426 : 2936563 ... 2946959 : - |
| To GenomeBrowser | habu1_scaffold1426:2936563..2946959 |
| Genes list of scaffold | habu1_scaffold1426 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| emerin-like isoform x1 | GO:0005635 GO:0016020 GO:0044699 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1426_g05182.t2 | 1 | 1 | LEM | 3 | 44 | 1.1e-16 | 59.9 | 2.6e-20 | 2.0e-16 | 59.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1426_g05182.t2 | gi|284004984|ref|NP_001164843.1| | emerin [Oryctolagus cuniculus] | 2.0e-24 |
| habu1_s1426_g05182.t2 | gi|348552748|ref|XP_003462189.1| | PREDICTED: emerin isoform X1 [Cavia porcellus] | 1.0e-23 |
| habu1_s1426_g05182.t2 | gi|514445874|ref|XP_005000101.1| | PREDICTED: emerin isoform X3 [Cavia porcellus] | 2.0e-23 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 63.7 |
| Venom grand-1 | 86.8 |
| Pit, infrared sensing | 52.3 |
| Nose | 39.4 |
| Brain-1 | 6.6 |
| Eye | 24.6 |
| fetal fibroblast | 49.2 |
| venom gland-2 | 57.7 |
| Brain-2 | 3.7 |
| Spleen | 27.0 |
| Lung | 58.7 |
| Liver | 13.8 |
| Kidney | 30.1 |
| Pancreas | 31.3 |
| Small intestine | 14.1 |
| Large intestine | 21.9 |
| Stomach | 46.1 |
| heart | 30.4 |
| ovary | 18.0 |
| cheek muscle | 33.7 |
Transcript
| Transcript ID | habu1_s1426_g05182.t1 |
|---|---|
| Definition | - |
>habu1_s1426_g05182.t1 cgtcctgtcagaggatgggggtgttggggggcctggagcgcggccaagctgttttccttacaaaagggcggcaggtggtg gctgatgggatatatgggttttcgggttccttagctgaccccgaattatgttgggttttaggagaatttgaattggataa aggtccagaataacattgtacaacatgtggattctaatcagacacaatccgttgtaatacatatctagaatgcatggatt ccatttggattcctgaactgattacgttatgaagatggtagcaccatggatgagtataaaggcatgacagacaaggaact tattgcacgattgaaaaaatacagcatcccccacggaccacttgttggatctacccggaaactttatgaaaagaaaatct acgaatatgagactgagaggattcaatatccttcgcatggaggatctgtgtcccacacagagccagccaccagccaaagc tacgtaaaagagacctttgtgagtccacaaaagaaggaagactccagctacggacgagaagctcttggctccacaagaac ttacttcaaagaatatgtcccaagacaggaatactattctgagtacagagatgaagatatggatgtcaacacttccgagc cctccagaccttccattcggagttactcatctttattaagccatacaacatttccagggacagtgagcgcccgccagcca attgccgagccatattcctactcttccagtgagaaggataggccagctgagagagacagcagttcctaccagagcgtttt ccaacggaaatcacctggcttgtcttcgctgcaggtgcagccccgccgtgccatacatccagaacgccaggcccaggcag cggagacggctctggggagcagtgcagaaaccaagcgatacctccccctctggctccagttcctgttgtttgggctgttg gctgccttcctggccttcatttacttcttacagggaggggctgaggacaacccctttgtcaagtacattcctcagtgaag ccttggctcttattacctaggccagtcttacctgacctggtccccttcagattggtcggggtgtaacttccagaggtcac agcccattggctgggatgctgggatttgcagttctaacccagccagaaggcaccacgatggccaggaatggcctagaatt ttgtggggagggaatttttttgtgtgtgggtagaatgttttgttgacagtaagtgccttcttgtcagctaaaaaagaaag tagtatattgagggccagggatggaaaggtttctaccaactttccagagataaagctgctccccacacctcgggccatct ccttcctgaaaccagctaacatggggcatttttatctgctgattttatagcttgtctttatatgggtggcttcttatgag ggggtggatgggcgtagagggaagaaatgtagcctatcaattgctttgttttaaatatacaaatgtatggactatctaaa taaaccttcccattttttaaggttgt |
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| Transcript ID | habu1_s1426_g05182.t2 |
| Definition | - |
>habu1_s1426_g05182.t2 cgtcctgtcagaggatgggggtgttggggggcctggagcgcggccaagctgttttccttacaaaagggcggcaggtggtg gctgatgggatatatgggttttcgggttccttagctgaccccgaattatgttgggttttaggagaatttgaattggataa aggtccagaataacattgtacaacatgtggattctaatcagacacaatccgttgtaatacatatctagaatgcatggatt ccatttggattcctgaactgattacgttatgaagatggtagcaccatggatgagtataaaggcatgacagacaaggaact tattgcacgattgaaaaaatacagcatcccccacggaccacttgttggatctacccggaaactttatgaaaagaaaatct acgaatatgagactgagaggattcaatatccttcgcatggaggatctgtgtcccacacagagccagccaccagccaaagc tacgtaaaagagacctttgtgagtccacaaaagaaggaagactccagctacggacgagaagctcttggctccacaagaac ttacttcaaagaatatgtcccaagacaggaatactattctgagtacagagatgaagatcccagtgccaccaagtcatatc agagttataactacaatttgccccaccatgaagagcattcttcatatgtatcagaagatatggatgtcaacacttccgag ccctccagaccttccattcggagttactcatctttattaagccatacaacatttccagggacagtgagcgcccgccagcc aattgccgagccatattcctactcttccagtgagaaggataggccagctgagagagacagcagttcctaccagagcgttt tccaacggaaatcacctggcttgtcttcgctgcaggtgcagccccgccgtgccatacatccagaacgccaggcccaggca gcggagacggctctggggagcagtgcagaaaccaagcgatacctccccctctggctccagttcctgttgtttgggctgtt ggctgccttcctggccttcatttacttcttacagggaggggctgaggacaacccctttgtcaagtacattcctcagtgaa gccttggctcttattacctaggccagtcttacctgacctggtccccttcagattggtcggggtgtaacttccagaggtca cagcccattggctgggatgctgggatttgcagttctaacccagccagaaggcaccacgatggccaggaatggcctagaat tttgtggggagggaatttttttgtgtgtgggtagaatgttttgttgacagtaagtgccttcttgtcagctaaaaaagaaa gtagtatattgagggccagggatggaaaggtttctaccaactttccagagataaagctgctccccacacctcgggccatc tccttcctgaaaccagctaacatggggcatttttatctgctgattttatagcttgtctttatatgggtggcttcttatga gggggtggatgggcgtagagggaagaaatgtagcctatcaattgctttgttttaaatatacaaatgtatggactatctaa ataaaccttcccattttttaaggttgt |
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Protein
| Protein ID | habu1_s1426_g05182.t1 |
|---|---|
| Definition | - |
>habu1_s1426_g05182.t1 MDEYKGMTDKELIARLKKYSIPHGPLVGSTRKLYEKKIYEYETERIQYPSHGGSVSHTEPATSQSYVKETFVSPQKKEDS SYGREALGSTRTYFKEYVPRQEYYSEYRDEDMDVNTSEPSRPSIRSYSSLLSHTTFPGTVSARQPIAEPYSYSSSEKDRP AERDSSSYQSVFQRKSPGLSSLQVQPRRAIHPERQAQAAETALGSSAETKRYLPLWLQFLLFGLLAAFLAFIYFLQGGAE DNPFVKYIPQ |
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| Protein ID | habu1_s1426_g05182.t2 |
| Definition | - |
>habu1_s1426_g05182.t2 MDEYKGMTDKELIARLKKYSIPHGPLVGSTRKLYEKKIYEYETERIQYPSHGGSVSHTEPATSQSYVKETFVSPQKKEDS SYGREALGSTRTYFKEYVPRQEYYSEYRDEDPSATKSYQSYNYNLPHHEEHSSYVSEDMDVNTSEPSRPSIRSYSSLLSH TTFPGTVSARQPIAEPYSYSSSEKDRPAERDSSSYQSVFQRKSPGLSSLQVQPRRAIHPERQAQAAETALGSSAETKRYL PLWLQFLLFGLLAAFLAFIYFLQGGAEDNPFVKYIPQ |
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