Gene
| Gene Model ID | habu1_s1467_g05433 |
|---|---|
| Locus | habu1_scaffold1467 : 1160220 ... 1171472 : - |
| To GenomeBrowser | habu1_scaffold1467:1160220..1171472 |
| Genes list of scaffold | habu1_scaffold1467 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna pseudouridylate synthase domain-containing protein 4-like isoform x1 | EC:5.4.99.12 GO:0001522 GO:0003723 GO:0005886 GO:0005921 GO:0009982 GO:0016021 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1467_g05433.t3 | 1 | 1 | PseudoU_synth_2 | 58 | 231 | 1.1e-35 | 122.8 | 2.4e-39 | 1.8e-35 | 122.2 |
| habu1_s1467_g05433.t3 | 1 | 1 | Innexin | 314 | 432 | 8.0e-08 | 31.7 | 2.6e-11 | 1.9e-07 | 30.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1467_g05433.t3 | gi|602649388|ref|XP_007431101.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 4-like isoform X2 [Python bivittatus] | 0.0 |
| habu1_s1467_g05433.t3 | gi|637340752|ref|XP_008116439.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 4 [Anolis carolinensis] | 0.0 |
| habu1_s1467_g05433.t3 | gi|558158911|ref|XP_006122389.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 4-like, partial [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 9.6 |
| Venom grand-1 | 3.6 |
| Pit, infrared sensing | 9.8 |
| Nose | 2.3 |
| Brain-1 | 2.1 |
| Eye | 1.9 |
| fetal fibroblast | 3.2 |
| venom gland-2 | 2.7 |
| Brain-2 | 1.1 |
| Spleen | 3.6 |
| Lung | 2.8 |
| Liver | 7.4 |
| Kidney | 9.3 |
| Pancreas | 8.5 |
| Small intestine | 3.0 |
| Large intestine | 3.3 |
| Stomach | 4.9 |
| heart | 2.8 |
| ovary | 12.7 |
| cheek muscle | 3.5 |
Transcript
| Transcript ID | habu1_s1467_g05433.t1 |
|---|---|
| Definition | - |
>habu1_s1467_g05433.t1 gaagagtttagtccaccccctttctgacgtcaggtgggcacggaagaaaatggccgtccaaaacgttccttgctcatttc tgcgagccgccgctcttcggaggagtttttcccacagtccagccgcggccgcttcggtaaccgctgagcagatggcggag aagctgcgggagcagaagaagccgaaagtggccccggaggttccaaaagaccgagtactgaggcgagtgcaagaatatgt tcagcagacccgatgcttccagcagctccatcctaacgtcctagccaaggttctcaaacagggggtcctctacacaaacg aagatattgtagtaataaacaagccttatggacttcctgtccatggtggccctcgggtgaagatatgcattacagatgtg ctgccaatactggcaaagatgttagggggcatgaaagctcaacctctgcatttatgtcaccggctggacaaagaaactac tggagtgatggtcctagcaaaagatgagatgactgcacaccgggtccaagagatgttcaaaacccgtcaggtggaaaaga aatactgggcgatttgtattggaaaaccagagccggaagaggggctggtggacattcccattctggagaaagaggtggag agccaccagtcacacttcaaaatgacacttgcgccaaattatcgtctatctttagaagacaaaaagttgcgcaaagtgcg ccggaacaaagatgctcacttggcagtgacccggtatcgtgtgctgagcaactggtccacttgttctctccttgaattgg aaccaatcacaggagtgaagcatcaactcagagtccacttggcttatggtttaggttgcacagtccttggggatcacaag tattctcactggagcaagctagcgccacagaaactctctccaggtacattgaagaaactgggtttggagcaagtcaaagc acgctacctccctctccacctacatgcctgcgagctcaccctgcctccaataaacagcagtgaggagcagaaaatccacc tgttttgcaagccacccgtcttcttcacgcgctccttaaaacggttaaagctagaatttccaaaactggaacaaaaagaa actaagaatgtagctgagcccttggagaagctgtctcttctgtgcgtgcacgcttggccccttcagacccgaaccatgtc gatcgcacatacggctggcaagtacatgctctctgatgcgctgcttccagacccaaacaggtccggagcaaaagggcttt acctggagctgccgtgtgatcgcatcatgaagtttgtcacagtggggctgccgctcttcttggtatctctcatgtttgca caggaattttccaccggatcccagatcagctgcttctctcctagcaacttcacagctgaacagtctcattttgttgatgc cgtgtgttgggactctttgcttcgctacgattctgaaccagcaggagacgctacatccaattccctctgggtcttcaaga tcttcccctattctttgctggtcatcgcagttgccatgtacctgccttatctgctgtggaaatacacagccgccccctca ctcaactgtgatctgttcttcatcatcgatgaactagataaatcctataaccgctccatccgcttggtgcaatacatggt gaagctccagcaatcggaagaggatccagaggacttttgggaggagcttgacctggctcgcagtgagcgatactttgagt tccctctcctggagaggtacctgacttgcaagcaacgttcccactacttgatcatcatttatgtattgaggaacctcttc ctcctctttcttctggctgtcagctgcctctacttggcatactgtcacctgcaggtcttttttcacgacaaattcagatg ttcaatcaaggcagggctcctgggagaagactctgatgttccagattggattccttgcaagctggttttcttctccgttt tccaagttaccagcatctgtcttggctctgtatacatccttctgggcccagtggtcctctaccacctgcttcagctgtgt cagtgggacaagcggcttctgtccatttatgaaatgctgccggcatttgatctcctcagcaagaaaatgctgacctgccc gttcaacgatctcaacatcatcttgctcttcctgcgagccaacatctcggaggtcaaatctttcagtagactgagtgtat tgagtactctcaaggatatttcacccaacaaagaaagcatagacacagttgtagattttatgactcttcttggaggcctg cagctagcaaagccaaagcataattccagtgccaacgagaatttgttccatcgtgagaatgaagttgaaatgaaacctgc tctgaaagccaaggaaaactgactcaggaatggattcgtgtctgcaccaaatagaaaaatttgaactggtgaacgcaaaa aaggacttttccctatgtgtatgttgggtcatctttattctttattttgttggacactgtttgtccattaatacttttgt tttctgctattacatccatggatttcacccttataataaatataaatgcaccagtcttctaa |
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| Transcript ID | habu1_s1467_g05433.t2 |
| Definition | - |
>habu1_s1467_g05433.t2 agcagaagaagccgaaagtggccccggaggtgaatctgttggtttgattgggaatcatgaggttgaggggggggttgttg gtttttcccagcatgcaccacggagaaactacacttcccagcgtgcattggtggctagaactttgaaaattaagcgaact gggtctcccagctacgcgcgatgcggcaatggaagttttgtggtgtgcagaatcctagaaggatttgttgagatgcagga ataatgacgtgtgttaccctccctgatcattgtgaaggattctgttgtgtagacaatttacagacacagcttgaccagtt ccaaaagaccgagtactgaggcgagtgcaagaatatgttcagcagacccgatgcttccagcagctccatcctaacgtcct agccaaggttctcaaacagggggtcctctacacaaacgaagatattgtagtaataaacaagccttatggacttcctgtcc atggtggccctcgggtgaagatatgcattacagatgtgctgccaatactggcaaagatgttagggggcatgaaagctcaa cctctgcatttatgtcaccggctggacaaagaaactactggagtgatggtcctagcaaaagatgagatgactgcacaccg ggtccaagagatgttcaaaacccgtcaggtggaaaagaaatactgggcgatttgtattggaaaaccagagccggaagagg ggctggtggacattcccattctggagaaagaggtggagagccaccagtcacacttcaaaatgacacttgcgccaaattat cgtctatctttagaagacaaaaagttgcgcaaagtgcgccggaacaaagatgctcacttggcagtgacccggtatcgtgt gctgagcaactggtccacttgttctctccttgaattggaaccaatcacaggagtgaagcatcaactcagagtccacttgg cttatggtttaggttgcacagtccttggggatcacaagtattctcactggagcaagctagcgccacagaaactctctcca ggtacattgaagaaactgggtttggagcaagtcaaagcacgctacctccctctccacctacatgcctgcgagctcaccct gcctccaataaacagcagtgaggagcagaaaatccacctgttttgcaagccacccgtcttcttcacgcgctccttaaaac ggttaaagctagaatttccaaaactggaacaaaaagaaactaagaatgtagctgagcccttggagaagctgtctcttctg tgcgtgcacgcttggccccttcagacccgaaccatgtcgatcgcacatacggctggcaagtacatgctctctgatgcgct gcttccagacccaaacaggtccggagcaaaagggctttacctggagctgccgtgtgatcgcatcatgaagtttgtcacag tggggctgccgctcttcttggtatctctcatgtttgcacaggaattttccaccggatcccagatcagctgcttctctcct agcaacttcacagctgaacagtctcattttgttgatgccgtgtgttgggactctttgcttcgctacgattctgaaccagc aggagacgctacatccaattccctctgggtcttcaagatcttcccctattctttgctggtcatcgcagttgccatgtacc tgccttatctgctgtggaaatacacagccgccccctcactcaactgtgatctgttcttcatcatcgatgaactagataaa tcctataaccgctccatccgcttggtgcaatacatggtgaagctccagcaatcggaagaggatccagaggacttttggga ggagcttgacctggctcgcagtgagcgatactttgagttccctctcctggagaggtacctgacttgcaagcaacgttccc actacttgatcatcatttatgtattgaggaacctcttcctcctctttcttctggctgtcagctgcctctacttggcatac tgtcacctgcaggtcttttttcacgacaaattcagatgttcaatcaaggcagggctcctgggagaagactctgatgttcc agattggattccttgcaagctggttttcttctccgttttccaagttaccagcatctgtcttggctctgtatacatccttc tgggcccagtggtcctctaccacctgcttcagctgtgtcagtgggacaagcggcttctgtccatttatgaaatgctgccg gcatttgatctcctcagcaagaaaatgctgacctgcccgttcaacgatctcaacatcatcttgctcttcctgcgagccaa catctcggaggtcaaatctttcagtagactgagtgtattgagtactctcaaggatatttcacccaacaaagaaagcatag acacagttgtagattttatgactcttcttggaggcctgcagctagcaaagccaaagcataattccagtgccaacgagaat ttgttccatcgtgagaatgaagttgaaatgaaacctgctctgaaagccaaggaaaactgactcaggaatggattcgtgtc tgcaccaaatagaaaaatttgaactggtgaacgcaaaaaaggacttttccctatgtgtatgttgggtcatctttattctt tattttgttggacactgtttgtccattaatacttttgttttctgctattacatccatggatttcacccttataataaata taaatgcaccagtcttctaa |
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| Transcript ID | habu1_s1467_g05433.t3 |
| Definition | - |
>habu1_s1467_g05433.t3 gaagagtttagtccaccccctttctgacgtcaggtgggcacggaagaaaatggccgtccaaaacgttccttgctcatttc tgcgagccgccgctcttcggaggagtttttcccacagtccagccgcggccgcttcggtaaccgctgagcagatggcggag aagctgcgggagcagaagaagccgaaagtggccccggaggttccaaaagaccgagtactgaggcgagtgcaagaatatgt tcagcagacccgatgcttccagcagctccatcctaacgtcctagccaaggttctcaaacagggggtcctctacacaaacg aagatattgtagtaataaacaagccttatggacttcctgtccatggtggccctcgggtgaagatatgcattacagatgtg ctgccaatactggcaaagatgttagggggcatgaaagctcaacctctgcatttatgtcaccggctggacaaagaaactac tggagtgatggtcctagcaaaagatgagatgactgcacaccgggtccaagagatgttcaaaacccgtcaggtggaaaaga aatactgggcgatttgtattggaaaaccagagccggaagaggggctggtggacattcccattctggagaaagaggtggag agccaccagtcacacttcaaaatgacacttgcgccaaattatcgtctatctttagaagacaaaaagttgcgcaaagtgcg ccggaacaaagatgctcacttggcagtgacccggtatcgtgtgctgagcaactggtccacttgttctctccttgaattgg aaccaatcacaggagtgaagcatcaactcagagtccacttggcttatggtttaggttgcacagtccttggggatcacaag tattctcactggagcaagctagcgccacagaaactctctccagatgtagctgagcccttggagaagctgtctcttctgtg cgtgcacgcttggccccttcagacccgaaccatgtcgatcgcacatacggctggcaagtacatgctctctgatgcgctgc ttccagacccaaacaggtccggagcaaaagggctttacctggagctgccgtgtgatcgcatcatgaagtttgtcacagtg gggctgccgctcttcttggtatctctcatgtttgcacaggaattttccaccggatcccagatcagctgcttctctcctag caacttcacagctgaacagtctcattttgttgatgccgtgtgttgggactctttgcttcgctacgattctgaaccagcag gagacgctacatccaattccctctgggtcttcaagatcttcccctattctttgctggtcatcgcagttgccatgtacctg ccttatctgctgtggaaatacacagccgccccctcactcaactgtgatctgttcttcatcatcgatgaactagataaatc ctataaccgctccatccgcttggtgcaatacatggtgaagctccagcaatcggaagaggatccagaggacttttgggagg agcttgacctggctcgcagtgagcgatactttgagttccctctcctggagagatgttcaatcaaggcagggctcctggga gaagactctgatgttccagattggattccttgcaagctggttttcttctccgttttccaagttaccagcatctgtcttgg ctctgtatacatccttctgggcccagtggtcctctaccacctgcttcagctgtgtcagtgggacaagcggcttctgtcca tttatgaaatgctgccggcatttgatctcctcagcaagaaaatgctgacctgcccgttcaacgatctcaacatcatcttg ctcttcctgcgagccaacatctcggaggtcaaatctttcagtagactgagtgtattgagtactctcaaggatatttcacc caacaaagaaagcatagacacagttgtagattttatgactcttcttggaggcctgcagctagcaaagccaaagcataatt ccagtgccaacgagaatttgttccatcgtgagaatgaagttgaaatgaaacctgctctgaaagccaaggaaaactgactc aggaatggattcgtgtctgcaccaaatagaaaaatttgaactggtgaacgcaaaaaaggacttttccctatgtgtatgtt gggtcatctttattctttattttgttggacactgtttgtccattaatacttttgttttctgctattacatccatggattt cacccttataataaatataaatgcaccagtcttctaa |
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Protein
| Protein ID | habu1_s1467_g05433.t1 |
|---|---|
| Definition | - |
>habu1_s1467_g05433.t1 MAVQNVPCSFLRAAALRRSFSHSPAAAASVTAEQMAEKLREQKKPKVAPEVPKDRVLRRVQEYVQQTRCFQQLHPNVLAK VLKQGVLYTNEDIVVINKPYGLPVHGGPRVKICITDVLPILAKMLGGMKAQPLHLCHRLDKETTGVMVLAKDEMTAHRVQ EMFKTRQVEKKYWAICIGKPEPEEGLVDIPILEKEVESHQSHFKMTLAPNYRLSLEDKKLRKVRRNKDAHLAVTRYRVLS NWSTCSLLELEPITGVKHQLRVHLAYGLGCTVLGDHKYSHWSKLAPQKLSPGTLKKLGLEQVKARYLPLHLHACELTLPP INSSEEQKIHLFCKPPVFFTRSLKRLKLEFPKLEQKETKNVAEPLEKLSLLCVHAWPLQTRTMSIAHTAGKYMLSDALLP DPNRSGAKGLYLELPCDRIMKFVTVGLPLFLVSLMFAQEFSTGSQISCFSPSNFTAEQSHFVDAVCWDSLLRYDSEPAGD ATSNSLWVFKIFPYSLLVIAVAMYLPYLLWKYTAAPSLNCDLFFIIDELDKSYNRSIRLVQYMVKLQQSEEDPEDFWEEL DLARSERYFEFPLLERYLTCKQRSHYLIIIYVLRNLFLLFLLAVSCLYLAYCHLQVFFHDKFRCSIKAGLLGEDSDVPDW IPCKLVFFSVFQVTSICLGSVYILLGPVVLYHLLQLCQWDKRLLSIYEMLPAFDLLSKKMLTCPFNDLNIILLFLRANIS EVKSFSRLSVLSTLKDISPNKESIDTVVDFMTLLGGLQLAKPKHNSSANENLFHRENEVEMKPALKAKEN |
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| Protein ID | habu1_s1467_g05433.t2 |
| Definition | - |
>habu1_s1467_g05433.t2 MLGGMKAQPLHLCHRLDKETTGVMVLAKDEMTAHRVQEMFKTRQVEKKYWAICIGKPEPEEGLVDIPILEKEVESHQSHF KMTLAPNYRLSLEDKKLRKVRRNKDAHLAVTRYRVLSNWSTCSLLELEPITGVKHQLRVHLAYGLGCTVLGDHKYSHWSK LAPQKLSPGTLKKLGLEQVKARYLPLHLHACELTLPPINSSEEQKIHLFCKPPVFFTRSLKRLKLEFPKLEQKETKNVAE PLEKLSLLCVHAWPLQTRTMSIAHTAGKYMLSDALLPDPNRSGAKGLYLELPCDRIMKFVTVGLPLFLVSLMFAQEFSTG SQISCFSPSNFTAEQSHFVDAVCWDSLLRYDSEPAGDATSNSLWVFKIFPYSLLVIAVAMYLPYLLWKYTAAPSLNCDLF FIIDELDKSYNRSIRLVQYMVKLQQSEEDPEDFWEELDLARSERYFEFPLLERYLTCKQRSHYLIIIYVLRNLFLLFLLA VSCLYLAYCHLQVFFHDKFRCSIKAGLLGEDSDVPDWIPCKLVFFSVFQVTSICLGSVYILLGPVVLYHLLQLCQWDKRL LSIYEMLPAFDLLSKKMLTCPFNDLNIILLFLRANISEVKSFSRLSVLSTLKDISPNKESIDTVVDFMTLLGGLQLAKPK HNSSANENLFHRENEVEMKPALKAKEN |
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| Protein ID | habu1_s1467_g05433.t3 |
| Definition | - |
>habu1_s1467_g05433.t3 MAEKLREQKKPKVAPEVPKDRVLRRVQEYVQQTRCFQQLHPNVLAKVLKQGVLYTNEDIVVINKPYGLPVHGGPRVKICI TDVLPILAKMLGGMKAQPLHLCHRLDKETTGVMVLAKDEMTAHRVQEMFKTRQVEKKYWAICIGKPEPEEGLVDIPILEK EVESHQSHFKMTLAPNYRLSLEDKKLRKVRRNKDAHLAVTRYRVLSNWSTCSLLELEPITGVKHQLRVHLAYGLGCTVLG DHKYSHWSKLAPQKLSPDVAEPLEKLSLLCVHAWPLQTRTMSIAHTAGKYMLSDALLPDPNRSGAKGLYLELPCDRIMKF VTVGLPLFLVSLMFAQEFSTGSQISCFSPSNFTAEQSHFVDAVCWDSLLRYDSEPAGDATSNSLWVFKIFPYSLLVIAVA MYLPYLLWKYTAAPSLNCDLFFIIDELDKSYNRSIRLVQYMVKLQQSEEDPEDFWEELDLARSERYFEFPLLERCSIKAG LLGEDSDVPDWIPCKLVFFSVFQVTSICLGSVYILLGPVVLYHLLQLCQWDKRLLSIYEMLPAFDLLSKKMLTCPFNDLN IILLFLRANISEVKSFSRLSVLSTLKDISPNKESIDTVVDFMTLLGGLQLAKPKHNSSANENLFHRENEVEMKPALKAKE N |
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