Gene
| Gene Model ID | habu1_s1467_g05434 |
|---|---|
| Locus | habu1_scaffold1467 : 1174209 ... 1179112 : - |
| To GenomeBrowser | habu1_scaffold1467:1174209..1179112 |
| Genes list of scaffold | habu1_scaffold1467 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trna pseudouridine(38 39) synthase | EC:5.4.99.12 GO:0003723 GO:0009982 GO:0031119 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1467_g05434.t1 | 2 | 1 | PseudoU_synth_1 | 70 | 187 | 2.6e-32 | 111.3 | 1.3e-13 | 1.9e-09 | 37.8 |
| habu1_s1467_g05434.t1 | 2 | 2 | PseudoU_synth_1 | 210 | 327 | 2.6e-32 | 111.3 | 5.2e-24 | 7.7e-20 | 71.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1467_g05434.t1 | gi|602649396|ref|XP_007431105.1| | PREDICTED: tRNA pseudouridine(38/39) synthase [Python bivittatus] | 0.0 |
| habu1_s1467_g05434.t1 | gi|327282044|ref|XP_003225754.1| | PREDICTED: tRNA pseudouridine(38/39) synthase [Anolis carolinensis] | 0.0 |
| habu1_s1467_g05434.t1 | gi|591383969|ref|XP_007066443.1| | PREDICTED: tRNA pseudouridine(38/39) synthase [Chelonia mydas] | 0.0 |
| habu1_s1467_g05434.t1 | gi|557322598|ref|XP_006034387.1| | PREDICTED: tRNA pseudouridine(38/39) synthase [Alligator sinensis] | 0.0 |
| habu1_s1467_g05434.t1 | gi|564262615|ref|XP_006270184.1| | PREDICTED: tRNA pseudouridine(38/39) synthase [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.6 |
| Venom grand-1 | 13.2 |
| Pit, infrared sensing | 9.5 |
| Nose | 9.3 |
| Brain-1 | 3.2 |
| Eye | 4.9 |
| fetal fibroblast | 11.3 |
| venom gland-2 | 9.3 |
| Brain-2 | 2.4 |
| Spleen | 8.8 |
| Lung | 7.2 |
| Liver | 11.1 |
| Kidney | 8.7 |
| Pancreas | 16.9 |
| Small intestine | 8.7 |
| Large intestine | 7.9 |
| Stomach | 8.4 |
| heart | 3.9 |
| ovary | 26.4 |
| cheek muscle | 3.7 |
Transcript
| Transcript ID | habu1_s1467_g05434.t1 |
|---|---|
| Definition | - |
>habu1_s1467_g05434.t1 cgacttttgagaagattttcagggtttagaaagtcgtctttatcgccggaaaatacgcattccaccaatggccaaaggca cagaagaaacagaaaggctactgaagagaatccaggagctggaagagacggtgcaaaagctagaaggcagactcttggaa aacaggaaaagcacaggcgaggggaatggcctcccagcatcaggaaaggggaagaaacgtccacagcggccattcaattt cagtgcgtatgcccagaggcatgtggcactaaagatcgcctacctggggtggggatatcagggctttgccagccaggaga acacccacaacacaatagaagagaaactgtttgaagctctgggaaaaactcggttggtggtcaacagacagacttctaac tatcatcgctgtggacgcaccgacaagggagtcagtgcttttggacaagtgatctctttggatctccggtcaaacctttc agagaataaatctggggttgcaacagaaggtaaaagtcatatttcagaggagatccgctacacccatattttgaatcagg tgctccctcctgacataagagtattagcatgggtccctgtagatcctagcttcagtgctagattcagttgcctgaagagg acctatcgctattttttcccctgtgcggatctggatgtcgctcttatgaatactgcagctcaaagatttgtagggaacca cgattttcgtaatctctgcaaaatggatgtagccaatggtgtgaccaactttcagaggacaatcctatctgcagaagtga agcttgcagatcaagaaaggaaagtggaagaacaaaaccctttccaaatctatgcgtttcaagtaacgggacaggcattc ctctatcaccaagtccgctgcatgatggccatcctcttcctgatcggacaaaagatggagaagcctgagattattgatga attgttcgatatagaaaacaatcctaggaaaccacaatacagcatggcagtggaatttcctctagttttatatgactgtg agtttgaaaacatccagtggatctatgatcatcaagtccaggaatttaacgttacacgctttcagcagctttggacgaac cacgctattaaaactcagatgctgtacagtatgttatggggcctggattttgcaaagatacctacagagccagcttcaag caacagcacaacaatactctggagagaggtaacaccaccagtccacaaccagattagtgctttaatcgagggagtgaaag cccgcaattacaaaccgttaatggatcggcccaaatgtgaaggtctagaatctcgtatcagtcattttgtgcgccgagga cgcattgaacaaccaaatttgaaaaaaacaaagcatcctgaaagggaatttgatgagaaaatggaaattaagagcaacca gatggattctattgaattcgacaaggaaattccagaacaagctgcaaaaaggatatgtattagtatagactgaagtttat tgacgctatcttgctatctttaaacaaatgaaattaccttaaacagatatctaaaattataatggtaattacattacata tagactttcatacattccctttaaccttcaaaaaataaatattttgttatataacaggcag |
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Protein
| Protein ID | habu1_s1467_g05434.t1 |
|---|---|
| Definition | - |
>habu1_s1467_g05434.t1 MAKGTEETERLLKRIQELEETVQKLEGRLLENRKSTGEGNGLPASGKGKKRPQRPFNFSAYAQRHVALKIAYLGWGYQGF ASQENTHNTIEEKLFEALGKTRLVVNRQTSNYHRCGRTDKGVSAFGQVISLDLRSNLSENKSGVATEGKSHISEEIRYTH ILNQVLPPDIRVLAWVPVDPSFSARFSCLKRTYRYFFPCADLDVALMNTAAQRFVGNHDFRNLCKMDVANGVTNFQRTIL SAEVKLADQERKVEEQNPFQIYAFQVTGQAFLYHQVRCMMAILFLIGQKMEKPEIIDELFDIENNPRKPQYSMAVEFPLV LYDCEFENIQWIYDHQVQEFNVTRFQQLWTNHAIKTQMLYSMLWGLDFAKIPTEPASSNSTTILWREVTPPVHNQISALI EGVKARNYKPLMDRPKCEGLESRISHFVRRGRIEQPNLKKTKHPEREFDEKMEIKSNQMDSIEFDKEIPEQAAKRICISI D |
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