Gene
| Gene Model ID | habu1_s1467_g05436 |
|---|---|
| Locus | habu1_scaffold1467 : 1182563 ... 1202695 : + |
| To GenomeBrowser | habu1_scaffold1467:1182563..1202695 |
| Genes list of scaffold | habu1_scaffold1467 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent rna helicase ddx25 | GO:0003676 GO:0004004 GO:0005524 GO:0005634 GO:0006406 GO:0006417 GO:0007286 GO:0033391 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1467_g05436.t1 | 1 | 1 | DEAD | 152 | 315 | 5.1e-29 | 100.9 | 6.0e-31 | 1.8e-27 | 95.9 |
| habu1_s1467_g05436.t1 | 1 | 1 | Helicase_C | 388 | 469 | 1.1e-20 | 73.2 | 7.8e-24 | 2.3e-20 | 72.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1467_g05436.t1 | gi|637340771|ref|XP_008116443.1| | PREDICTED: ATP-dependent RNA helicase DDX25 [Anolis carolinensis] | 0.0 |
| habu1_s1467_g05436.t1 | gi|558158881|ref|XP_006122382.1| | PREDICTED: tRNA pseudouridine(38/39) synthase-like isoform X5 [Pelodiscus sinensis] | 0.0 |
| habu1_s1467_g05436.t1 | gi|602649398|ref|XP_007431106.1| | PREDICTED: ATP-dependent RNA helicase DDX25 [Python bivittatus] | 0.0 |
| habu1_s1467_g05436.t1 | gi|348573923|ref|XP_003472740.1| | PREDICTED: ATP-dependent RNA helicase DDX25 [Cavia porcellus] | 0.0 |
| habu1_s1467_g05436.t1 | gi|533126719|ref|XP_005378540.1| | PREDICTED: ATP-dependent RNA helicase DDX25 isoform X1 [Chinchilla lanigera] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.2 |
| Venom grand-1 | 0.4 |
| Pit, infrared sensing | 1.1 |
| Nose | 1.5 |
| Brain-1 | 1.7 |
| Eye | 1.5 |
| fetal fibroblast | 0.6 |
| venom gland-2 | 0.1 |
| Brain-2 | 1.6 |
| Spleen | 0.5 |
| Lung | 0.6 |
| Liver | 1.1 |
| Kidney | 2.1 |
| Pancreas | 1.0 |
| Small intestine | 0.2 |
| Large intestine | 0.3 |
| Stomach | 0.4 |
| heart | 1.6 |
| ovary | 17.0 |
| cheek muscle | 1.2 |
Transcript
| Transcript ID | habu1_s1467_g05436.t1 |
|---|---|
| Definition | - |
>habu1_s1467_g05436.t1 tagcgtgtaactgtcgcggtcggtctgggtcgccctcgggggagagggcgaaaatgtgggcgaagccgaagtacttaacg atggggcttggggggcggcccaaggcagacgccgggcacgtggagcacaacctttgcaggccaagtattgttggaaaacc tcttcaaaatcctcagcctttctcagggacaggatgcctcttcaggaggaacaacgtgagctgggagacacaagacgaga aggatgatgacagaggatgcctcttcagaaggaacaacgtgagcttggagacacaggacgagaaggatgatgacagagag agtttggcagaaatgtctctcctgaataagctgatccggaagtctcttgtggaatcgagtcatcatgtagagattctaca acgagatccccaatcaccactgttttctgtaaccacctttgaaaagctgcacttgaagccagaactgctgcagggtattt acggcatgggttttaacaggccatccaagatacaggaaaccgcactgccaattatgcttgctgatccacccgaaaatctg atagcacaaagtcagtcaggtacaggcaaaacagctgcatttgttctagctatgctgagcagaacagacccaaagaagga atttccacagtgcctctgcctctctcccacctttgagctggctgttcaaattggacgtgtggttgagaaaatggggagat actgtgtcaacataaaggttaattatgctattcgaggcaacatagttccaagggggagtccagtaagagaacaaataata attggaacaccagggaccctgctagattggtgttttaagctaaagctttttaatatgaagaagatcaaagtgtatgtgct ggatgaagcagatgttatgatcgataaacagaatttcttggatcagagtgttcgtatccagagatctttatcgtcagatt gccagctgcttctcttctcggcaacctttgaaccgccggtactcaagtttgcccagcgcatcatccctgagcccaacatc attaccctccgccgggaggagctgaccctcagcaatatcaggcagtattactttgagtgtgagaataaggaagacaaatt cagagccctgtgcaacctctacggcagcatcaccatcggccaggccatcattttctgccagactcgctacaatgctaaat ggctgtaccacgccctaaaaacagatgggcaccaagtgtccctcctgatcggggaactgacagttgaaaagcgggcagag gtgatccagcagttccgcgatgggaaatacaaagttatcatcacaaccaacctctgcgccagaggcattgacgtgatgca ggtcaccatcgtggtgaactttaccttgcctacaacagtgttccatgcgcctgactttgagacctacctccaccgcatcg gtcgagctggccggtttgggaagaacggtctggcgttcaatatggtggagaggcaaaacttacctcttctgttcgaaatc caggaccacttcaagatcttgatccaacgcctggatccagaggatatggaagccctggaaaaaatagaagactgaagcct taatgattttgtagaagacactttttgcccagatatattttgctttgtcaaattaaaatgaaaattgtcttgttcctgt |
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Protein
| Protein ID | habu1_s1467_g05436.t1 |
|---|---|
| Definition | - |
>habu1_s1467_g05436.t1 MWAKPKYLTMGLGGRPKADAGHVEHNLCRPSIVGKPLQNPQPFSGTGCLFRRNNVSWETQDEKDDDRGCLFRRNNVSLET QDEKDDDRESLAEMSLLNKLIRKSLVESSHHVEILQRDPQSPLFSVTTFEKLHLKPELLQGIYGMGFNRPSKIQETALPI MLADPPENLIAQSQSGTGKTAAFVLAMLSRTDPKKEFPQCLCLSPTFELAVQIGRVVEKMGRYCVNIKVNYAIRGNIVPR GSPVREQIIIGTPGTLLDWCFKLKLFNMKKIKVYVLDEADVMIDKQNFLDQSVRIQRSLSSDCQLLLFSATFEPPVLKFA QRIIPEPNIITLRREELTLSNIRQYYFECENKEDKFRALCNLYGSITIGQAIIFCQTRYNAKWLYHALKTDGHQVSLLIG ELTVEKRAEVIQQFRDGKYKVIITTNLCARGIDVMQVTIVVNFTLPTTVFHAPDFETYLHRIGRAGRFGKNGLAFNMVER QNLPLLFEIQDHFKILIQRLDPEDMEALEKIED |
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