Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s1506_g05593
Locus habu1_scaffold1506 : 189552 ... 296155 : -
To GenomeBrowser habu1_scaffold1506:189552..296155
Genes list of scaffold habu1_scaffold1506

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s1506_g05593.t2 1 1 PH 656 751 4.9e-12 45.9 5.2e-15 1.5e-11 44.3
habu1_s1506_g05593.t2 1 1 PH_11 656 752 1.9e-07 31.3 2.3e-10 6.8e-07 29.5

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 0.2
Venom grand-1 0.0
Pit, infrared sensing 0.1
Nose 0.1
Brain-1 0.0
Eye 0.6
fetal fibroblast 0.5
venom gland-2 0.0
Brain-2 0.1
Spleen 0.0
Lung 2.1
Liver 0.5
Kidney 20.1
Pancreas 0.0
Small intestine 0.0
Large intestine 0.0
Stomach 0.0
heart 0.0
ovary 2.7
cheek muscle 0.0

Transcript
Transcript IDhabu1_s1506_g05593.t1
Definition-
>habu1_s1506_g05593.t1
caaaacaaacctcttgtagctacaaaaaaaccaaaaacatcttcatgtgaacgctgtggagtcataatcagctcacggcc
caaacggtctggagatttgaagaagcatttatagaaaaggaatacctggcgcattatggatttatatgtcaactaacttt
aactgaaagaagtgccacctacctgatttaatctcattggcagaatcaactatgcatcatctcctaagacttgttttgga
tcagaaagacctttcacgtgctggggaactcttttctctggacgattgtgaaatagaaggctgcctatccgaagctcttg
agcaaatcaaactaattagttcatctcctgactaccagacgaatgacaacgaccaagcagttgtggagatttgtatcact
cgaattacttcagccatcagggagactgaatccatcgagaagcatggaaaagctcttattgatctctgggagtcgtgttt
agagcacaatctgaaacctttttgtaaagatgaagacactccacatgcaaagattgcctccgatattatgagctgcattt
tgcagaattataatcgccctcccatcatagctttggctgtcccagttgcagtgaagtttctccagagaggtaacaaagaa
ttgtgcaggaatttatccagttatctctcccttgctgcaattagcaaagcagagttgcttgctgaacatacagaaattat
tgtaaaaagcatcctgcaagggaattccacgttgctccgtgtattgccttctttgtatgaaaagcaacaagaacctttaa
gcaaccacctgagagaattggtaggactgatgcctcatctggaaccatctgaacagcaacatcttctacagcttttgcta
actgttgcaaagaaaaaacagcctaaggttctcaaacaatgtatttcttctctaattgatcacctaagagatcctcttta
taatgatatcatcctagacatattcatagaaatatcagattatgaaccggaattgttggccaatttactgcccatactga
aagaaactggagagagttttcctaatttgatagggcaaatggcaaagatttttggagctgttggacaagttgatgaggaa
cgagctcggatttgcctgatctatttgcttaatcagctggccaacatggaacattctttccatcatatcattttgttgga
gatcaaatacatcactgacaccttctccaacatcttgggtatacaaagcagagatatttatcgtatgagtaacagtttca
ctgctgtagctaaacatctcatccaacagctgaaaaataacacaaggtcggaatgcaggtctcaaagtttagtagtgcat
gctggtcatatgaagaatatccatgcagacagcaaaggagaaggggagaatggagatgttacagccagcatctctttcac
tgatctgtatttgagccaagaaaccgacaaattgccttccagtgcaggctctgaagagtcccagctggaacaatcctcat
tttcacgcccaagtatcaaatgttcagaaccagagaaactgccagaacctgttaaagaaaactgccacgaagagaaccca
aagaccataaagaatcccatggagtatcaagataagctttactttcacttaaaagaaaatctctctaaagtgaaagcata
tgtcatggagatggggaagaaaattccattcccagacgagtgtcttatagaagatacagttaaaagttgtgtagcaaagt
tgtccttcagctgtcccctgaaaggtcactactgcctgtacagtaaatccggttttgctctcatcagtcaccagcctcaa
ctttggatccatatcatgtttctctttcagcagggcttgtttccagaaccattgtccatgcagaataattctttgcaagt
tctgaagaccttgtgggaaaaaactcagcttaaaggaacacatagttttgaaactgcaatggtgcaatctacatttccac
ataagaaggatctggaccacatacagttacatctggaagaagtgaggttctttgatttattcagttacaatgaagaagtg
agggcttggcaatgtttcatgtgtaacaatcctgaaaaggcaacagttatgaatcaagatggccagccactgattgaagg
caggttgaaagaaaagcaaattcgatggaaattcattaaacgatggaagactcgctattttacacttgctgggaatcaac
ttctctttcagaaaggaaaatctaaagatgatccagatgattgtcccattgaactgagtaaagtccagagtgtcaaagta
gtagccaagaagcgccgagatcgcagtcttcctcgggcctttgaaatcttcacggacaataaaacgtatgtcttcaaggc
ccaagatgaaaagaatgctgaggaatggctacagtgcattaatgtggcagtggtacaagctaaagaaagagaaagcagag
aagcaaccacatatttgtaagaactatagattcacttatgttttctcaaagatctttttcagttatagctagctatgtgg
agcatctcgatatctgaattggaaaagatattacgtaggcgttgtaatgtattttgcagtgagaaatgataccactgaca
ttttttccacaatattccatcttcttgctctttggatatcacatagaccagttctgggtgttcatagaactaagaccatc
acaaccagaagtgccagttcaagggctgggccttgttgaagagaaggaggatccgcacataagtatttaaataattgcag
ttattgaaaagcaacttatgtctgattagcaatttgctttcacctcatcttggctgtatttttagtacatgccacacttt
tttggggggggtctcacacatgaattgcagatataactgctgttctaatttgtcctgactgccattttttgagcatccaa
gcctgccattgtatagtacttgcattgtaccccaaatcaaggcaattggctggtcaccattggatgggacaaagtctaaa
aatatcttcccattctgatattataggtgggttttagtaggccttttaaattcagtggtttaatgctagttatgaataca
tgagcaacagaaaaaaagatatttaatttgttttagattatgaaagaaatcaaagttgactattttatactatgatgtgc
tattcatcctgccagttagcaaagattatacgaatccattcaaatctgtgtaattcatacatgacaattgaagcatatgg
tttcttgaatctgctcccatagaaataaatctgtgtgctatattctacttg
Transcript IDhabu1_s1506_g05593.t2
Definition-
>habu1_s1506_g05593.t2
caaaacaaacctcttgtagctacaaaaaaaccaaaaacatcttcatgtgaacgctgtggagtcataatcagctcacggcc
caaacggtctggagatttgaagaagcatttatagaaaaggaatacctggcgcattatggatttatatgtcaactaacttt
aactgaaagaagtgccacctacctgatttaatctcattggcagaatcaactatgcatcatctcctaagacttgttttgga
tcagaaagacctttcacgtgctggggaactcttttctctggacgattgtgaaatagaaggctgcctatccgaagctcttg
agcaaatcaaactaattagttcatctcctgactaccagacgaatgacaacgaccaagcagttgtggagatttgtatcact
cgaattacttcagccatcagggagactgaatccatcgagaagcatggaaaagctcttattgatctctgggagtcgtgttt
agagcacaatctgaaacctttttgtaaagatgaagacactccacatgcaaagattgcctccgatattatgagctgcattt
tgcagaattataatcgccctcccatcatagctttggctgtcccagttgcagtgaagtttctccagagaggtaacaaagaa
ttgtgcaggaatttatccagttatctctcccttgctgcaattagcaaagcagagttgcttgctgaacatacagaaattat
tgtaaaaagcatcctgcaagggaattccacgttgctccgtgtattgccttctttgtatgaaaagcaacaagaacctttaa
gcaaccacctgagagaattggtaggactgatgcctcatctggaaccatctgaacagcaacatcttctacagcttttgcta
actgttgcaaagaaaaaacagcctaaggttctcaaacaatgtatttcttctctaattgatcacctaagagatcctcttta
taatgatatcatcctagacatattcatagaaatatcagattatgaaccggaattgttggccaatttactgcccatactga
aagaaactggagagagttttcctaatttgatagggcaaatggcaaagatttttggagctgttggacaagttgatgaggaa
cgagctcggatttgcctgatctatttgcttaatcagctggccaacatggaacattctttccatcatatcattttgttgga
gatcaaatacatcactgacaccttctccaacatcttgggtatacaaagcagagatatttatcgtatgagtaacagtttca
ctgctgtagctaaacatctcatccaacagctgaaaaataacacaaggtcggaatgcaggtctcaaagtttagtagtgcat
gctggtcatatgaagaatatccatgcagacagcaaaggagaaggggagaatggagatgttacagccagcatctctttcac
tgatctgtatttgagccaagaaaccgacaaattgccttccagtgcaggctctgaagagtcccagctggaacaatcctcat
tttcacgcccaagtatcaaatgttcagaaccagagaaactgccagaacctgttaaagaaaactgccacgaagagaaccca
aagaccataaagaatcccatggagtatcaagataagctttactttcacttaaaagaaaatctctctaaagtgaaagcata
tgtcatggagatggggaagaaaattccattcccagacgagtgtcttatagaagtattagaatggccattcactgatacag
ttaaaagttgtgtagcaaagttgtccttcagctgtcccctgaaaggtcactactgcctgtacagtaaatccggttttgct
ctcatcagtcaccagcctcaactttggatccatatcatgtttctctttcagcagggcttgtttccagaaccattgtccat
gcagaataattctttgcaagttctgaagaccttgtgggaaaaaactcagcttaaaggaacacatagttttgaaactgcaa
tggtgcaatctacatttccacataagaaggatctggaccacatacagttacatctggaagaagtgaggttctttgattta
ttcagttacaatgaagaagtgagggcttggcaatgtttcatgtgtaacaatcctgaaaaggcaacagttatgaatcaaga
tggccagccactgattgaaggcaggttgaaagaaaagcaaattcgatggaaattcattaaacgatggaagactcgctatt
ttacacttgctgggaatcaacttctctttcagaaaggaaaatctaaagatgatccagatgattgtcccattgaactgagt
aaagtccagagtgtcaaagtagtagccaagaagcgccgagatcgcagtcttcctcgggcctttgaaatcttcacggacaa
taaaacgtatgtcttcaaggcccaagatgaaaagaatgctgaggaatggctacagtgcattaatgtggcagtggtacaag
ctaaagaaagagaaagcagagaagcaaccacatatttgtaagaactatagattcacttatgttttctcaaagatcttttt
cagttatagctagctatgtggagcatctcgatatctgaattggaaaagatattacgtaggcgttgtaatgtattttgcag
tgagaaatgataccactgacattttttccacaatattccatcttcttgctctttggatatcacatagaccagttctgggt
gttcatagaactaagaccatcacaaccagaagtgccagttcaagggctgggccttgttgaagagaaggaggatccgcaca
taagtatttaaataattgcagttattgaaaagcaacttatgtctgattagcaatttgctttcacctcatcttggctgtat
ttttagtacatgccacacttttttggggggggtctcacacatgaattgcagatataactgctgttctaatttgtcctgac
tgccattttttgagcatccaagcctgccattgtatagtacttgcattgtaccccaaatcaaggcaattggctggtcacca
ttggatgggacaaagtctaaaaatatcttcccattctgatattataggtgggttttagtaggccttttaaattcagtggt
ttaatgctagttatgaatacatgagcaacagaaaaaaagatatttaatttgttttagattatgaaagaaatcaaagttga
ctattttatactatgatgtgctattcatcctgccagttagcaaagattatacgaatccattcaaatctgtgtaattcata
catgacaattgaagcatatggtttcttgaatctgctcccatagaaataaatctgtgtgctatattctacttg

Protein
Protein IDhabu1_s1506_g05593.t1
Definition-
>habu1_s1506_g05593.t1
MHHLLRLVLDQKDLSRAGELFSLDDCEIEGCLSEALEQIKLISSSPDYQTNDNDQAVVEICITRITSAIRETESIEKHGK
ALIDLWESCLEHNLKPFCKDEDTPHAKIASDIMSCILQNYNRPPIIALAVPVAVKFLQRGNKELCRNLSSYLSLAAISKA
ELLAEHTEIIVKSILQGNSTLLRVLPSLYEKQQEPLSNHLRELVGLMPHLEPSEQQHLLQLLLTVAKKKQPKVLKQCISS
LIDHLRDPLYNDIILDIFIEISDYEPELLANLLPILKETGESFPNLIGQMAKIFGAVGQVDEERARICLIYLLNQLANME
HSFHHIILLEIKYITDTFSNILGIQSRDIYRMSNSFTAVAKHLIQQLKNNTRSECRSQSLVVHAGHMKNIHADSKGEGEN
GDVTASISFTDLYLSQETDKLPSSAGSEESQLEQSSFSRPSIKCSEPEKLPEPVKENCHEENPKTIKNPMEYQDKLYFHL
KENLSKVKAYVMEMGKKIPFPDECLIEDTVKSCVAKLSFSCPLKGHYCLYSKSGFALISHQPQLWIHIMFLFQQGLFPEP
LSMQNNSLQVLKTLWEKTQLKGTHSFETAMVQSTFPHKKDLDHIQLHLEEVRFFDLFSYNEEVRAWQCFMCNNPEKATVM
NQDGQPLIEGRLKEKQIRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKVVAKKRRDRSLPRAFEIF
TDNKTYVFKAQDEKNAEEWLQCINVAVVQAKERESREATTYL
Protein IDhabu1_s1506_g05593.t2
Definition-
>habu1_s1506_g05593.t2
MHHLLRLVLDQKDLSRAGELFSLDDCEIEGCLSEALEQIKLISSSPDYQTNDNDQAVVEICITRITSAIRETESIEKHGK
ALIDLWESCLEHNLKPFCKDEDTPHAKIASDIMSCILQNYNRPPIIALAVPVAVKFLQRGNKELCRNLSSYLSLAAISKA
ELLAEHTEIIVKSILQGNSTLLRVLPSLYEKQQEPLSNHLRELVGLMPHLEPSEQQHLLQLLLTVAKKKQPKVLKQCISS
LIDHLRDPLYNDIILDIFIEISDYEPELLANLLPILKETGESFPNLIGQMAKIFGAVGQVDEERARICLIYLLNQLANME
HSFHHIILLEIKYITDTFSNILGIQSRDIYRMSNSFTAVAKHLIQQLKNNTRSECRSQSLVVHAGHMKNIHADSKGEGEN
GDVTASISFTDLYLSQETDKLPSSAGSEESQLEQSSFSRPSIKCSEPEKLPEPVKENCHEENPKTIKNPMEYQDKLYFHL
KENLSKVKAYVMEMGKKIPFPDECLIEVLEWPFTDTVKSCVAKLSFSCPLKGHYCLYSKSGFALISHQPQLWIHIMFLFQ
QGLFPEPLSMQNNSLQVLKTLWEKTQLKGTHSFETAMVQSTFPHKKDLDHIQLHLEEVRFFDLFSYNEEVRAWQCFMCNN
PEKATVMNQDGQPLIEGRLKEKQIRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKVVAKKRRDRSL
PRAFEIFTDNKTYVFKAQDEKNAEEWLQCINVAVVQAKERESREATTYL

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Okinawa Institute of Science and Technology
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