Gene
| Gene Model ID | habu1_s1506_g05598 |
|---|---|
| Locus | habu1_scaffold1506 : 561977 ... 579893 : - |
| To GenomeBrowser | habu1_scaffold1506:561977..579893 |
| Genes list of scaffold | habu1_scaffold1506 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| short stature homeobox protein 2 | GO:0002062 GO:0003677 GO:0006357 GO:0007507 GO:0007517 GO:0010720 GO:0022603 GO:0030326 GO:0048562 GO:0048705 GO:0051240 GO:0051960 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1506_g05598.t1 | 1 | 1 | Homeobox | 118 | 174 | 4.6e-25 | 86.9 | 2.5e-28 | 9.2e-25 | 86.0 |
| habu1_s1506_g05598.t1 | 1 | 1 | OAR | 275 | 293 | 1.6e-08 | 33.7 | 9.2e-12 | 3.4e-08 | 32.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1506_g05598.t1 | gi|558164036|ref|XP_006123520.1| | PREDICTED: short stature homeobox protein 2 isoform X2 [Pelodiscus sinensis] | 0.0 |
| habu1_s1506_g05598.t1 | gi|530586590|ref|XP_005287052.1| | PREDICTED: short stature homeobox protein 2 isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s1506_g05598.t1 | gi|558164032|ref|XP_006123519.1| | PREDICTED: short stature homeobox protein 2 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s1506_g05598.t1 | gi|564240172|ref|XP_006276924.1| | PREDICTED: short stature homeobox protein 2 [Alligator mississippiensis] | 0.0 |
| habu1_s1506_g05598.t1 | gi|602649545|ref|XP_007431175.1| | PREDICTED: short stature homeobox protein 2 [Python bivittatus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 0.3 |
| Nose | 0.1 |
| Brain-1 | 0.0 |
| Eye | 0.1 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.0 |
| Brain-2 | 0.8 |
| Spleen | 0.0 |
| Lung | 0.0 |
| Liver | 0.0 |
| Kidney | 0.0 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.0 |
| ovary | 0.5 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s1506_g05598.t1 |
|---|---|
| Definition | - |
>habu1_s1506_g05598.t1 tagtttgagctcagcgccttcctcctccagaccgccagccagaccttactaaaccatcacaacgctcatccatccacgtg cccaggcgaggagcgtagagccagaggaggcaaacgagggggagaaaaaaaagagcccaaagcagagccggcgatggaag aacttaccgcttttgtttccaagtcgtttgatcagaaagtgaaagagaagaaggagctgatcacgtaccgggaggtgctg gaaagcggacccgccaggggaactaaggagtccggaggctccaacgagtccagcgcggaggagaacagcagcccggcggc ccggggagctggaggaagcggcggcgtgggacggcgatcgccggtgcgagagctggacatgggcgccgtcgacaggaacc gggacgcggacactcctaaactcagcgaagtttcgccggagctgaaagagcgcaaagaggatgccaaagcgatggaagac gaagggcagacgaaaatcaagcagcggcggagtcgcaccaatttcaccttggagcagctgaacgagctggagcgcctttt cgacgagacccactacccggacgccttcatgcgagaggagctcagccagcggctgggactgtcggaagcccgggtgcagg tctggtttcagaacagaagagctaaatgcagaaagcaagaaaaccagctccataaaggggttctcattggagcagcaagc cagtttgaagcatgccgagttgctccctacgtgaatgttggtgctttgcggatgcctttccagcaggtgcaggcacagct gcagctggacagcgccgtggcgcacgcgcaccaccacctccacccgcacctggcggcgcacgcgccctacatgatgttcc cggccccgcccttcggcctgcccttggccaccctggcggcggagtctgcctcggccgcttcggtggtggccgcggccgcg gcggccaagaccaccagcaagaactcgagcatcgcggacctcagactcaaagccaaaaagcacgcggccgcgctgggcct gtgactcttcggccccgacgggcgcggggcgatcccacggcaggcagcgcgaggcccccggggcaggctctccggagaga cgcccccgccgccgccctcccgcgctccgccttcaacagagaccgac |
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Protein
| Protein ID | habu1_s1506_g05598.t1 |
|---|---|
| Definition | - |
>habu1_s1506_g05598.t1 MEELTAFVSKSFDQKVKEKKELITYREVLESGPARGTKESGGSNESSAEENSSPAARGAGGSGGVGRRSPVRELDMGAVD RNRDADTPKLSEVSPELKERKEDAKAMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEAR VQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAHHHLHPHLAAHAPYM MFPAPPFGLPLATLAAESASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL |
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