Gene
| Gene Model ID | habu1_s1513_g05652 |
|---|---|
| Locus | habu1_scaffold1513 : 1 ... 12407 : + |
| To GenomeBrowser | habu1_scaffold1513:1..12407 |
| Genes list of scaffold | habu1_scaffold1513 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| translocation protein sec62 isoform x1 | GO:0004872 GO:0005789 GO:0005791 GO:0006613 GO:0006620 GO:0007165 GO:0008565 GO:0016021 GO:0016235 GO:0045111 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1513_g05652.t1 | 2 | 1 | Sec62 | 104 | 171 | 7.2e-10 | 38.6 | 3.8e-08 | 4.3e-05 | 23.0 |
| habu1_s1513_g05652.t1 | 2 | 2 | Sec62 | 168 | 191 | 7.2e-10 | 38.6 | 1.0e-07 | 0.00011 | 21.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1513_g05652.t1 | gi|327266794|ref|XP_003218189.1| | PREDICTED: translocation protein SEC62 [Anolis carolinensis] | 0.0 |
| habu1_s1513_g05652.t1 | gi|602670750|ref|XP_007440896.1| | PREDICTED: translocation protein SEC62 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s1513_g05652.t1 | gi|449510008|ref|XP_002193984.2| | 0.0 | |
| habu1_s1513_g05652.t1 | gi|641800788|ref|XP_008163191.1| | PREDICTED: translocation protein SEC62 isoform X3 [Chrysemys picta bellii] | 0.0 |
| habu1_s1513_g05652.t1 | gi|530619187|ref|XP_005299297.1| | PREDICTED: translocation protein SEC62 isoform X2 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 13.6 |
| Venom grand-1 | 16.2 |
| Pit, infrared sensing | 11.4 |
| Nose | 16.9 |
| Brain-1 | 14.9 |
| Eye | 19.2 |
| fetal fibroblast | 23.7 |
| venom gland-2 | 55.8 |
| Brain-2 | 18.3 |
| Spleen | 12.4 |
| Lung | 13.6 |
| Liver | 29.0 |
| Kidney | 18.6 |
| Pancreas | 32.7 |
| Small intestine | 12.2 |
| Large intestine | 13.9 |
| Stomach | 17.0 |
| heart | 13.0 |
| ovary | 24.7 |
| cheek muscle | 39.6 |
Transcript
| Transcript ID | habu1_s1513_g05652.t1 |
|---|---|
| Definition | - |
>habu1_s1513_g05652.t1 gctccatgtgggaaattgtaggtaaaagtcctgaaggtacacttgtgtacaagccacggcttcctcctggtctgtgtcaa aatgagctggaagtgggagaaccattcaaagaagagaaggctgttgctaaataccttcgcttcaactgtccaaccaagtc taccaacatgatggggcacagagttgattatttcattgcctccaaagctgtggactgccttttggattctaagtgggcaa aggccaagaaaggagaagaagctctgtttacaactcgagagtcaatagtggattattgtaacagacttctgaagaaacag ttttttcaccgagcactaaaagtgatgaaaatgaaacccgacaaggacacaaagaaagaaaaggaaaaagagaaagggaa gactgagagtggaaaggaagatgagaagaagagcaaaaaggatagtggaaaagaagaaaaggttaaaaaagaaaaagaaa aaaagaaggatggtgaaaaagatgagggcaagaaggtatatgtatggatctatgacccagttcattttaaaacatttgca atgggcctcatacttggtgagtcagaaggagcattaatgagtgaaatatccaaacttataaacaagctgtctgtttctta acacatctgtgtctttcccaagggccattttttaaaaagtgtttacttgtttcatcaaaactatgttgtaccacctgctt cagaatcccagatctagtaaagaaggagaggggaaaaaaaccttacacaagttggtagtaaactttctaagagtctcaat taaatactagaatatgaaatattgtt |
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Protein
| Protein ID | habu1_s1513_g05652.t1 |
|---|---|
| Definition | - |
>habu1_s1513_g05652.t1 SMWEIVGKSPEGTLVYKPRLPPGLCQNELEVGEPFKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVDCLLDSKWAK AKKGEEALFTTRESIVDYCNRLLKKQFFHRALKVMKMKPDKDTKKEKEKEKGKTESGKEDEKKSKKDSGKEEKVKKEKEK KKDGEKDEGKKVYVWIYDPVHFKTFAMGLILGESEGALMSEISKLINKLSVS |
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