Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s1518_g05671
Locus habu1_scaffold1518 : 38929 ... 45935 : -
To GenomeBrowser habu1_scaffold1518:38929..45935
Genes list of scaffold habu1_scaffold1518

Annotation by Blast2GO
Annotation GO
target of egr1 protein 1 GO:0003676 GO:0005634 GO:0046872

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s1518_g05671.t3 1 1 CAF1 10 477 0.0 230.0 0.0 0.0 229.7

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 4.5
Venom grand-1 5.0
Pit, infrared sensing 6.1
Nose 5.3
Brain-1 4.4
Eye 6.2
fetal fibroblast 4.1
venom gland-2 4.8
Brain-2 6.8
Spleen 5.5
Lung 6.0
Liver 7.6
Kidney 5.9
Pancreas 7.2
Small intestine 5.5
Large intestine 7.0
Stomach 5.0
heart 7.1
ovary 18.1
cheek muscle 12.0

Transcript
Transcript IDhabu1_s1518_g05671.t1
Definition-
>habu1_s1518_g05671.t1
actgtaggaagcacaaaaacctaggctctccaacggttactttttcttgtatcgatagatttccctctttggacgaaaat
gaaagtaaaggattttaccgtactcacgtatttttttcctacaacgggaggctatgcactttcgaacgtaattcttactc
cgtgtacaaagagttttccccaggcggtgtggtacccaggaacgcagagaagatagctctgctgaacgcaaagcctgttc
ccgtttagacattggccattgcaatatgattctttttgttagagctattatatctacactgcacaaatccggaggaccgg
tagatggcagcaaatagtttcctgtacctcggctatcttctgcaggttgtgtggattcttgcaactgagacatgtcacct
atatttttgagctttgatggaagagatggggtagatgcagaaaaagtatcagttctttaaattgactagttggcaacctt
ttgcttattttactttttcaccatggttcccccaaaacaaagttaataactggattattaaaataacatcatatgtgtct
tgttcccaacagctgtattataatggcctctttaagggtgcccgtcattgatgtccaggaagacaatttcaaggagctct
ggccatccatgctcttggctataaaaacttctagctttattgctgttgacacagaacttagtgggcttggaacaaggaag
agtttgctgaatcagtgcattgaagaacgatataaagcggtttgcaatgctgctaaaacacgctctattttgtctcttgg
agttgcttgttttaaacacattcctgacaagacagagaacacatatctctcccaaatctacaacatgaccttgctgtgta
tggatgattatataattgaaccacagtcagtccaattcctggtgcaacatggctttgacttcaacaagcagtattctcag
ggcattccatatcataggggcaatgataagggaaatgaaaatcagagccaatcaattcgtacttttttcctggaaataat
tcgagcaagaaaacctatcattctgcacaatggcctaattgatttagttttcctctaccagtgcttctatgcccacttac
ctgacaatctgggcactttcactgctgacctttctgagatgttcccagctggcatctatgacaccaaatatgcctcagaa
ttcgaggcacgttttgtagcgtcttacctagagtatgcctataagaagtgcaaacgagaaaacttcaggttgaaagactc
taagaaaccatatctcagcatagaattctgcaactatcctgccagcatagatgcctatgttgaatatcggttctgctctc
tgcctgatgtcagccaggcacaaactgacagcgctaacaaaattgtcatctgtcaaccattttcggcttatggctggtgc
ccagatgggctgaaatgtacacaatctcacaatattgatctaataattaatgaagatgagaatcagaaagaggagaagcg
gaagtcaagaaaacagaaatggaaacggcggaagaacttggcagagtcgacaaaagaagttgaactgagcagccccatga
gtgatgtaaagttagcttggaataaggaaaaaggttccccttccaaacagtcctgccctattaacttgattgtccctatt
gtagatagtgcagatgcagaaagagcatctggtaatggggagacctcaatggatgtggaacaagaactagtttccaacag
tgcagttgatgccagtgttgatggcaatgttgccattgccttagacaatgagaatgtcatatcttcaccattcaaagact
tccagcaggaaaagccaataggaagtgaaggagcagagccaaaagcccagttacagagtgattctgcagtgacttctttg
cctgtcacagataatgtagcaccatctaactgttcacgaggaagtattcaccgggctggctttgatgccttcatgacagg
ttacataatagcatacatccagatgctcaagaatgataaacagagagactcaaatgatgggccttggttaccagactgcc
ataacaaattgtaccttagtggaaagtctgtgcctcttcagattgtgaaaagtttgttttctaaatcttccaaagcccac
aaccaaaagatgaaattggcatgggacagtagttagaagcaaacgccatatcgttcaggatcacagataatgctattatt
atcgttttcttgaagctgcagccctcaaaccagagctgctatagagacattaataagacatgatagaatatgtgcagcag
cctgaatatggatttatttttaaatgtttgtaaaattatgtattaaattttcccattggggatagaatctttatattgca
gatgaagcattttttttcaaacacttaagcaagcactttcttttataaggctagtacaccactttaaaaaatgtttccca
tttgtttatgtattcatactcacacaatgcctcttggggaatggcagtgctgtacatgtatgagaagacatatggcatta
gttttcaaagcagccttgtaaactttcccaaagaatcatctgccttaaacattcagagaaatgttttctttgtaccaagg
ggattgtggtaaaacattttttacatggatcgccttgcaccgtcctccatcctaatgttcataagatcagatagttacct
gtatccctgctctctaacttctatgtcttcagcagatgttgtgaagtcattacagctctccatgcagtctagatgcctac
tttagtagactttcagatttatagactagtacttgtttttaagcaggtgcttaaaacagcattagttccttttcagacat
cccagcttgtagagcttgaccagaataggtaagaagtgcattacctacctttttaaacacttgtgtgttcaagtgaatac
ttgagaacagttattacacagatgtcaaactcgatcgtgtcatgtgacgtatcgagactttttttgcctttgcggag
Transcript IDhabu1_s1518_g05671.t2
Definition-
>habu1_s1518_g05671.t2
actgtaggaagcacaaaaacctaggctctccaacggttactttttcttgtatcgatagatttccctctttggacgaaaat
gaaagtaaaggattttaccgtactcacgtatttttttcctacaacgggaggctatgcactttcgaacgtaattcttactc
cgtgtacaaagaggtgtgtttctaatggagagagggggcggtgttctttgcaagctgccctgcaattaatatttcaagca
gcaaatagacccgagacttagtttgtgctgttctgcagattttgcgatttggaggcgcgaagttttaactcggcggaagc
attggggaggagtagagactaactctttctccagatcttttttataaatcataccaccaggttttatttacgtgattgaa
aaactaagatcttagtagctaaagcttgttaggaaaagaattaatcctcgttaagctagcactggtcatttgatgaaaaa
caaccaaacgtgagcatgccagtttatgcttatgtatagtgtaactgcctgcttgatactattttgtaattcgcatattt
taatttttttcttaaaactttattagctactttcccgcagcgaattatgaaataaaaaagtatatcgctgatttttttaa
aaaataaatgagttgttgctaagactgcaatggaaaatctttcctcccactcggcaatttttgtaaaatattgaattgaa
aactcttgcccgctgccaagtccgaatatgatattttaaaaaatgtttttatatgcatacttgcatctattctcggcttg
tggggatctgctttcaaagtaggctggatgcagcgtttaccttaatatgccgcaaaatgaaaattttgatgacctcagaa
gttgggtttaattttttttaaaaaatatgcagaaaaacccacagttgctaaacatattaccccatcgcttttagtttttg
atagcatgccaaaaacttttaaagcgtctaggttaggaaagctggaatactacattcatttttctgcgaattatattaat
ttgaacgggactcctgtttagataatcttacataactgcgctagcatccaacgaaaggcactgaaataggcatctagatc
tgtgcgccatcagcaggggaaggacccttgagttcgtaacgcgccggaagtttatgggggtatcagcgggagacgaattc
tactaaggttttccccaggcggtgtggtacccaggaacgcagagaagatagctctgctgaacgcaaagcctgttcccgtt
tagacattggccattgcaatatgattctttttgttagagctattatatctacactgcacaaatccggaggaccggtagat
ggcagcaaatagtttcctgtacctcggctatcttctgcaggttgtgtggattcttgcaactgagacatgtcacctatatt
tttgagctttgatggaagagatggggtagatgcagaaaaagtatcagttctttaaattgactagttggcaaccttttgct
tattttactttttcaccatggttcccccaaaacaaagttaataactggattattaaaataacatcatatgtgtcttgttc
ccaacagctgtattataatggcctctttaagggtgcccgtcattgatgtccaggaagacaatttcaaggagctctggcca
tccatgctcttggctataaaaacttctagctttattgctgttgacacagaacttagtgggcttggaacaaggaagagttt
gctgaatcagtgcattgaagaacgatataaagcggtttgcaatgctgctaaaacacgctctattttgtctcttggagttg
cttgttttaaacacattcctgacaagacagagaacacatatctctcccaaatctacaacatgaccttgctgtgtatggat
gattatataattgaaccacagtcagtccaattcctggtgcaacatggctttgacttcaacaagcagtattctcagggcat
tccatatcataggggcaatgataagggaaatgaaaatcagagccaatcaattcgtacttttttcctggaaataattcgag
caagaaaacctatcattctgcacaatggcctaattgatttagttttcctctaccagtgcttctatgcccacttacctgac
aatctgggcactttcactgctgacctttctgagatgttcccagctggcatctatgacaccaaatatgcctcagaattcga
ggcacgttttgtagcgtcttacctagagtatgcctataagaagtgcaaacgagaaaacttcaggttgaaagactctaaga
aaccatatctcagcatagaattctgcaactatcctgccagcatagatgcctatgttgaatatcggttctgctctctgcct
gatgtcagccaggcacaaactgacagcgctaacaaaattgtcatctgtcaaccattttcggcttatggctggtgcccaga
tgggctgaaatgtacacaatctcacaatattgatctaataattaatgaagatgagaatcagaaagaggagaagcggaagt
caagaaaacagaaatggaaacggcggaagaacttggcagagtcgacaaaagaagttgaactgagcagccccatgagtgat
gtaaagttagcttggaataaggaaaaaggttccccttccaaacagtcctgccctattaacttgattgtccctattgtaga
tagtgcagatgcagaaagagcatctggtaatggggagacctcaatggatgtggaacaagaactagtttccaacagtgcag
ttgatgccagtgttgatggcaatgttgccattgccttagacaatgagaatgtcatatcttcaccattcaaagacttccag
caggaaaagccaataggaagtgaaggagcagagccaaaagcccagttacagagtgattctgcagtgacttctttgcctgt
cacagataatgtagcaccatctaactgttcacgaggaagtattcaccgggctggctttgatgccttcatgacaggttaca
taatagcatacatccagatgctcaagaatgataaacagagagactcaaatgatgggccttggttaccagactgccataac
aaattgtaccttagtggaaagtctgtgcctcttcagattgtgaaaagtttgttttctaaatcttccaaagcccacaacca
aaagatgaaattggcatgggacagtagttagaagcaaacgccatatcgttcaggatcacagataatgctattattatcgt
tttcttgaagctgcagccctcaaaccagagctgctatagagacattaataagacatgatagaatatgtgcagcagcctga
atatggatttatttttaaatgtttgtaaaattatgtattaaattttcccattggggatagaatctttatattgcagatga
agcattttttttcaaacacttaagcaagcactttcttttataaggctagtacaccactttaaaaaatgtttcccatttgt
ttatgtattcatactcacacaatgcctcttggggaatggcagtgctgtacatgtatgagaagacatatggcattagtttt
caaagcagccttgtaaactttcccaaagaatcatctgccttaaacattcagagaaatgttttctttgtaccaaggggatt
gtggtaaaacattttttacatggatcgccttgcaccgtcctccatcctaatgttcataagatcagatagttacctgtatc
cctgctctctaacttctatgtcttcagcagatgttgtgaagtcattacagctctccatgcagtctagatgcctactttag
tagactttcagatttatagactagtacttgtttttaagcaggtgcttaaaacagcattagttccttttcagacatcccag
cttgtagagcttgaccagaataggtaagaagtgcattacctacctttttaaacacttgtgtgttcaagtgaatacttgag
aacagttattacacagatgtcaaactcgatcgtgtcatgtgacgtatcgagactttttttgcctttgcggag
Transcript IDhabu1_s1518_g05671.t3
Definition-
>habu1_s1518_g05671.t3
actgtaggaagcacaaaaacctaggctctccaacggttactttttcttgtatcgatagatttccctctttggacgaaaat
gaaagtaaaggattttaccgtactcacgtatttttttcctacaacgggaggctatgcactttcgaacgtaattcttactc
cgtgtacaaagaggtgtgtttctaatggagagagggggcggtgttctttgcaagctgccctgcaattaatatttcaagca
gcaaatagacccgagacttagtttgtgctgttctgcagattttgcgatttggaggcgcgaagttttaactcggcggaagc
attggggaggagtagagactaactctttctccagatcttttttataaatcataccaccaggttttatttacgtgattgaa
aaactaagatcttagtagctaaagcttgttaggaaaagaattaatcctcgttaagctagcactggtcatttgatgaaaaa
caaccaaacgtgagcatgccagtttatgcttatgtatagtgtaactgcctgcttgatactattttgtaattcgcatattt
taatttttttcttaaaactttattagctactttcccgcagcgaattatgaaataaaaaagtatatcgctgatttttttaa
aaaataaatgagttgttgctaagactgcaatggaaaatctttcctcccactcggcaatttttgtaaaatattgaattgaa
aactcttgcccgctgccaagtccgaatatgatattttaaaaaatgtttttatatgcatacttgcatctattctcggcttg
tggggatctgctttcaaagtaggctggatgcagcgtttaccttaatatgccgcaaaatgaaaattttgatgacctcagaa
gttgggtttaattttttttaaaaaatatgcagaaaaacccacagttgctaaacatattaccccatcgcttttagtttttg
atagcatgccaaaaacttttaaagcgtctaggttaggaaagctggaatactacattcatttttctgcgaattatattaat
ttgaacgggactcctgtttagataatcttacataactgcgctagcatccaacgaaaggcactgaaataggcatctagatc
tgtgcgccatcagcaggggaaggacccttgagttcgtaacgcgccggaagtttatgggggtatcagcgggagacgaattc
tactaagggtaatagaaaatctgaaaacttccagggattgctacagttgaatgtgagttcctggattctattcgttttga
tttttctctcctttatagttttccccaggcggtgtggtacccaggaacgcagagaagatagctctgctgaacgcaaagcc
tgttcccgtttagacattggccattgcaatatgattctttttgttagagctattatatctacactgcacaaatccggagg
accggtagatggcagcaaatagtttcctgtacctcggctatcttctgcagctgtattataatggcctctttaagggtgcc
cgtcattgatgtccaggaagacaatttcaaggagctctggccatccatgctcttggctataaaaacttctagctttattg
ctgttgacacagaacttagtgggcttggaacaaggaagagtttgctgaatcagtgcattgaagaacgatataaagcggtt
tgcaatgctgctaaaacacgctctattttgtctcttggagttgcttgttttaaacacattcctgacaagacagagaacac
atatctctcccaaatctacaacatgaccttgctgtgtatggatgattatataattgaaccacagtcagtccaattcctgg
tgcaacatggctttgacttcaacaagcagtattctcagggcattccatatcataggggcaatgataagggaaatgaaaat
cagagccaatcaattcgtacttttttcctggaaataattcgagcaagaaaacctatcattctgcacaatggcctaattga
tttagttttcctctaccagtgcttctatgcccacttacctgacaatctgggcactttcactgctgacctttctgagatgt
tcccagctggcatctatgacaccaaatatgcctcagaattcgaggcacgttttgtagcgtcttacctagagtatgcctat
aagaagtgcaaacgagaaaacttcaggttgaaagactctaagaaaccatatctcagcatagaattctgcaactatcctgc
cagcatagatgcctatgttgaatatcggttctgctctctgcctgatgtcagccaggcacaaactgacagcgctaacaaaa
ttgtcatctgtcaaccattttcggcttatggctggtgcccagatgggctgaaatgtacacaatctcacaatattgatcta
ataattaatgaagatgagaatcagaaagaggagaagcggaagtcaagaaaacagaaatggaaacggcggaagaacttggc
agagtcgacaaaagaagttgaactgagcagccccatgagtgatgtaaagttagcttggaataaggaaaaaggttcccctt
ccaaacagtcctgccctattaacttgattgtccctattgtagatagtgcagatgcagaaagagcatctggtaatggggag
acctcaatggatgtggaacaagaactagtttccaacagtgcagttgatgccagtgttgatggcaatgttgccattgcctt
agacaatgagaatgtcatatcttcaccattcaaagacttccagcaggaaaagccaataggaagtgaaggagcagagccaa
aagcccagttacagagtgattctgcagtgacttctttgcctgtcacagataatgtagcaccatctaactgttcacgagga
agtattcaccgggctggctttgatgccttcatgacaggttacataatagcatacatccagatgctcaagaatgataaaca
gagagactcaaatgatgggccttggttaccagactgccataacaaattgtaccttagtggaaagtctgtgcctcttcaga
ttgtgaaaagtttgttttctaaatcttccaaagcccacaaccaaaagatgaaattggcatgggacagtagttagaagcaa
acgccatatcgttcaggatcacagataatgctattattatcgttttcttgaagctgcagccctcaaaccagagctgctat
agagacattaataagacatgatagaatatgtgcagcagcctgaatatggatttatttttaaatgtttgtaaaattatgta
ttaaattttcccattggggatagaatctttatattgcagatgaagcattttttttcaaacacttaagcaagcactttctt
ttataaggctagtacaccactttaaaaaatgtttcccatttgtttatgtattcatactcacacaatgcctcttggggaat
ggcagtgctgtacatgtatgagaagacatatggcattagttttcaaagcagccttgtaaactttcccaaagaatcatctg
ccttaaacattcagagaaatgttttctttgtaccaaggggattgtggtaaaacattttttacatggatcgccttgcaccg
tcctccatcctaatgttcataagatcagatagttacctgtatccctgctctctaacttctatgtcttcagcagatgttgt
gaagtcattacagctctccatgcagtctagatgcctactttagtagactttcagatttatagactagtacttgtttttaa
gcaggtgcttaaaacagcattagttccttttcagacatcccagcttgtagagcttgaccagaataggtaagaagtgcatt
acctacctttttaaacacttgtgtgttcaagtgaatacttgagaacagttattacacagatgtcaaactcgatcgtgtca
tgtgacgtatcgagactttttttgcctttgcggag

Protein
Protein IDhabu1_s1518_g05671.t1
Definition-
>habu1_s1518_g05671.t1
MLLAIKTSSFIAVDTELSGLGTRKSLLNQCIEERYKAVCNAAKTRSILSLGVACFKHIPDKTENTYLSQIYNMTLLCMDD
YIIEPQSVQFLVQHGFDFNKQYSQGIPYHRGNDKGNENQSQSIRTFFLEIIRARKPIILHNGLIDLVFLYQCFYAHLPDN
LGTFTADLSEMFPAGIYDTKYASEFEARFVASYLEYAYKKCKRENFRLKDSKKPYLSIEFCNYPASIDAYVEYRFCSLPD
VSQAQTDSANKIVICQPFSAYGWCPDGLKCTQSHNIDLIINEDENQKEEKRKSRKQKWKRRKNLAESTKEVELSSPMSDV
KLAWNKEKGSPSKQSCPINLIVPIVDSADAERASGNGETSMDVEQELVSNSAVDASVDGNVAIALDNENVISSPFKDFQQ
EKPIGSEGAEPKAQLQSDSAVTSLPVTDNVAPSNCSRGSIHRAGFDAFMTGYIIAYIQMLKNDKQRDSNDGPWLPDCHNK
LYLSGKSVPLQIVKSLFSKSSKAHNQKMKLAWDSS
Protein IDhabu1_s1518_g05671.t2
Definition-
>habu1_s1518_g05671.t2
MLLAIKTSSFIAVDTELSGLGTRKSLLNQCIEERYKAVCNAAKTRSILSLGVACFKHIPDKTENTYLSQIYNMTLLCMDD
YIIEPQSVQFLVQHGFDFNKQYSQGIPYHRGNDKGNENQSQSIRTFFLEIIRARKPIILHNGLIDLVFLYQCFYAHLPDN
LGTFTADLSEMFPAGIYDTKYASEFEARFVASYLEYAYKKCKRENFRLKDSKKPYLSIEFCNYPASIDAYVEYRFCSLPD
VSQAQTDSANKIVICQPFSAYGWCPDGLKCTQSHNIDLIINEDENQKEEKRKSRKQKWKRRKNLAESTKEVELSSPMSDV
KLAWNKEKGSPSKQSCPINLIVPIVDSADAERASGNGETSMDVEQELVSNSAVDASVDGNVAIALDNENVISSPFKDFQQ
EKPIGSEGAEPKAQLQSDSAVTSLPVTDNVAPSNCSRGSIHRAGFDAFMTGYIIAYIQMLKNDKQRDSNDGPWLPDCHNK
LYLSGKSVPLQIVKSLFSKSSKAHNQKMKLAWDSS
Protein IDhabu1_s1518_g05671.t3
Definition-
>habu1_s1518_g05671.t3
MASLRVPVIDVQEDNFKELWPSMLLAIKTSSFIAVDTELSGLGTRKSLLNQCIEERYKAVCNAAKTRSILSLGVACFKHI
PDKTENTYLSQIYNMTLLCMDDYIIEPQSVQFLVQHGFDFNKQYSQGIPYHRGNDKGNENQSQSIRTFFLEIIRARKPII
LHNGLIDLVFLYQCFYAHLPDNLGTFTADLSEMFPAGIYDTKYASEFEARFVASYLEYAYKKCKRENFRLKDSKKPYLSI
EFCNYPASIDAYVEYRFCSLPDVSQAQTDSANKIVICQPFSAYGWCPDGLKCTQSHNIDLIINEDENQKEEKRKSRKQKW
KRRKNLAESTKEVELSSPMSDVKLAWNKEKGSPSKQSCPINLIVPIVDSADAERASGNGETSMDVEQELVSNSAVDASVD
GNVAIALDNENVISSPFKDFQQEKPIGSEGAEPKAQLQSDSAVTSLPVTDNVAPSNCSRGSIHRAGFDAFMTGYIIAYIQ
MLKNDKQRDSNDGPWLPDCHNKLYLSGKSVPLQIVKSLFSKSSKAHNQKMKLAWDSS

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Chromosome
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495